Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Algorithm
OR5M11	219487	hgsc.bcm.edu	37	11	56310261	56310261	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	.	NM_001005245	exon1	c.A473G	p.Q158R	ATGGCCTGGAAGA	.	120.0	38.0	169.0	0.0	.	Atlas-SNP
RERG	85004	hgsc.bcm.edu	37	12	15262053	15262053	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	RERG-659	NM_032918	exon5	c.C591T	p.I197I	ACTACTGATTTTG	.	342.0	57.0	163.0	0.0	.	Atlas-SNP
NFE2	4778	hgsc.bcm.edu	37	12	54686624	54686624	+	Missense_Mutation	SNP	C	C	T	rs139796996		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	NFE2-226	NM_001136023	exon3	c.G656A	p.R219Q	TCCCCCCGTGCAG	.	164.0	45.0	161.0	0.0	C|1.000;T|0.000	Atlas-SNP
TMEM132C	92293	hgsc.bcm.edu	37	12	128900026	128900026	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	TMEM132C-68	NM_001136103	exon2	c.G835A	p.D279N	GCCCAGGACAGCG	.	652.0	144.0	242.0	0.0	.	Atlas-SNP
C12orf29	91298	hgsc.bcm.edu	37	12	88434018	88434020	+	In_Frame_Del	DEL	TGT	TGT	-	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	TGT	TGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	C12orf29-90	NM_001009894	exon2	c.183_185del	p.61_62del	.	.	475.0	78.0	256.0	0.0	.	Pindel
CDRT15L2	256223	hgsc.bcm.edu	37	17	20483953	20483953	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	.	NM_001190790	exon2	c.C757T	p.R253C	CTCAGACGCAATC	.	135.0	111.0	226.0	0.0	.	Atlas-SNP
CDC27	996	hgsc.bcm.edu	37	17	45234327	45234327	+	Missense_Mutation	SNP	C	C	T	rs7350889	bycluster	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	CDC27-291	NM_001114091	exon7	c.G794A	p.G265D	CTTCGACCAGTTT	.	28.0	5.0	45.0	0.0	C|1.000;|0.000	Atlas-SNP
TWSG1	57045	hgsc.bcm.edu	37	18	9399488	9399488	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	TWSG1-92	NM_020648	exon5	c.G635T	p.G212V	ACTATGGTAGTAA	.	51.0	4.0	85.0	0.0	.	Atlas-SNP
AP1M1	8907	hgsc.bcm.edu	37	19	16338981	16338981	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	AP1M1-156	NM_001130524	exon9	c.G886A	p.E296K	GTGATCGAGAAGC	.	137.0	27.0	86.0	0.0	.	Atlas-SNP
CYP2A13	1553	hgsc.bcm.edu	37	19	41596013	41596013	+	Silent	SNP	A	A	G	rs199984436		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	CYP2A13-93	NM_000766	exon3	c.A405G	p.L135L	CACCCTAAGGGGT	.	215.0	11.0	22.0	0.0	A|0.999;G|0.001	Atlas-SNP
NDUFS7	374291	hgsc.bcm.edu	37	19	1395488	1395490	+	Frame_Shift_Del	DEL	CGC	CGC	-	rs3065757		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	CGC	CGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	NDUFS7-90	NM_024407	exon8	c.642_685del	p.214_214del	.	.	222.0	92.0	20.0	0.0	.	Atlas-Indel
HDGFRP2	0	hgsc.bcm.edu	37	19	4499666	4499680	+	In_Frame_Del	DEL	TGGCCGGGGAGGAGG	TGGCCGGGGAGGAGG	-	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	TGGCCGGGGAGGAGG	TGGCCGGGGAGGAGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	.	NM_001001520	exon15	c.1738_1752del	p.580_584del	.	.	24.0	15.0	12.0	0.0	.	Atlas-Indel
DMAP1	55929	hgsc.bcm.edu	37	1	44684101	44684101	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	DMAP1-226	NM_001034023	exon5	c.T512G	p.F171C	TGCGTTTTGTTGT	.	243.0	220.0	238.0	2.0	.	Atlas-SNP
CACNA1E	777	hgsc.bcm.edu	37	1	181727162	181727162	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	CACNA1E-95	NM_001205293	exon31	c.G4409A	p.R1470H	AGTACCGCGTGTG	.	163.0	135.0	132.0	1.0	.	Atlas-SNP
NLRP3	114548	hgsc.bcm.edu	37	1	247587530	247587530	+	Missense_Mutation	SNP	G	G	A	rs180177443	alternate_allele	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	NLRP3,NS,carcinoma,+1	NLRP3-674	NM_001243133	exon3	c.G779A	p.R260Q	ACTGTCGAGAGGT	.	90.0	16.0	106.0	0.0	.	Atlas-SNP
GBP2	2634	hgsc.bcm.edu	37	1	89586906	89586912	+	Frame_Shift_Del	DEL	TCCAGAT	TCCAGAT	-	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	TCCAGAT	TCCAGAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	GBP2-91	NM_004120	exon3	c.233_239del	p.78_80del	.	.	84.0	13.0	59.0	0.0	.	Pindel
CLK1	1195	hgsc.bcm.edu	37	2	201726549	201726549	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	CLK1-784	NM_001162407	exon2	c.G163A	p.D55N	TGTCATCCCAATC	.	177.0	63.0	112.0	0.0	.	Atlas-SNP
TGFBR2	7048	hgsc.bcm.edu	37	3	30713517	30713517	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	TGFBR2-1698	NM_003242	exon4	c.A842G	p.Y281C	TTCCCTATGAGGA	.	356.0	208.0	202.0	1.0	.	Atlas-SNP
NUDT9	53343	hgsc.bcm.edu	37	4	88379078	88379078	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	NUDT9-90	NM_198038	exon8	c.C808G	p.L270V	CTGAAGCTTTATG	.	194.0	41.0	165.0	0.0	.	Atlas-SNP
IRF2	3660	hgsc.bcm.edu	37	4	185339341	185339341	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	IRF2-91	NM_002199	exon5	c.G391A	p.D131N	CTTTGTCTTCTTT	.	120.0	32.0	135.0	0.0	.	Atlas-SNP
LRRC14B	389257	hgsc.bcm.edu	37	5	194841	194841	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	LRRC14B-69	NM_001080478	exon2	c.G918A	p.L306L	CCCGCTGCGAGTA	.	411.0	120.0	180.0	0.0	.	Atlas-SNP
SLC17A5	26503	hgsc.bcm.edu	37	6	74345205	74345205	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	SLC17A5-190	NM_012434	exon6	c.G719A	p.W240X	AGAAACCAAAATA	.	9.0	9.0	12.0	0.0	.	Atlas-SNP
HEBP2	23593	hgsc.bcm.edu	37	6	138726347	138726347	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	HEBP2-90	NM_014320	exon2	c.G168A	p.M56I	GTCTATGGACTGG	.	81.0	29.0	105.0	0.0	.	Atlas-SNP
TBP	6908	hgsc.bcm.edu	37	6	170871004	170871004	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	TBP-91	NM_001172085	exon2	c.G120A	p.Q40Q	GCAGCAGCAACAA	.	76.0	7.0	45.0	0.0	.	Atlas-SNP
TBP	6908	hgsc.bcm.edu	37	6	170871097	170871097	+	Silent	SNP	G	G	A	rs200496051		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	TBP-91	NM_001172085	exon2	c.G213A	p.Q71Q	GCAGCAGCAGCAG	.	132.0	9.0	92.0	0.0	.	Atlas-SNP
KCNQ3	3786	hgsc.bcm.edu	37	8	133144473	133144473	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	KCNQ3-138	NM_001204824	exon14	c.T1478A	p.I493N	TCTTCGATTTCTG	.	135.0	56.0	79.0	0.0	.	Atlas-SNP
AQP7	364	hgsc.bcm.edu	37	9	33386976	33386976	+	Missense_Mutation	SNP	G	G	A	rs143391243	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	AQP7-90	NM_001170	exon4	c.C259T	p.R87C	AGATGCGGCCTGC	.	242.0	33.0	237.0	0.0	G|0.999;A|0.001	Atlas-SNP
