Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Algorithm
FANK1	92565	hgsc.bcm.edu	37	10	127585221	127585221	+	Nonsense_Mutation	SNP	C	C	T	rs202109621		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	FANK1-91	NM_145235	exon1	c.C10T	p.Q4X	GAGCCCCAGAGTA	.	85.0	9.0	18.0	0.0	.	Atlas-SNP
GRM5	2915	hgsc.bcm.edu	37	11	88386562	88386562	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	GRM5-949	NM_000842	exon4	c.G921C	p.W307C	GTCAGCCCAGCCA	.	29.0	12.0	35.0	0.0	.	Atlas-SNP
KRT2	3849	hgsc.bcm.edu	37	12	53045632	53045633	+	In_Frame_Ins	INS	-	-	GCCTCCAAAGCCGCTGCC	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	KRT2-92	NM_000423	exon1	c.295_296insGGCAGCGGCTTTGGAGGC	p.G99delinsGSGFGGG	.	.	563.0	193.0	149.0	0.0	.	Atlas-Indel
CEP128	145508	hgsc.bcm.edu	37	14	81209499	81209499	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	CEP128-91	NM_152446	exon18	c.A2726G	p.K909R	GATTCCTTGTTTT	.	58.0	17.0	68.0	0.0	.	Atlas-SNP
TMOD2	29767	hgsc.bcm.edu	37	15	52073255	52073255	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	TMOD2-92	NM_014548	exon6	c.G508T	p.E170X	AAAGGTGAAAAAG	.	60.0	4.0	83.0	0.0	.	Atlas-SNP
KBTBD13	390594	hgsc.bcm.edu	37	15	65369395	65369395	+	Missense_Mutation	SNP	C	C	T	rs2919358	byfrequency	TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	.	NM_001101362	exon1	c.C242T	p.A81V	TGCAGGCCGTGGA	.	4.0	4.0	8.0	0.0	C|0.452;T|0.548	Atlas-SNP
ATP6V0A1	535	hgsc.bcm.edu	37	17	40666399	40666399	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	ATP6V0A1-91	NM_001130021	exon21	c.G2341A	p.A781T	TTCACTGCCTTTG	.	176.0	48.0	214.0	0.0	.	Atlas-SNP
IGF2BP1	10642	hgsc.bcm.edu	37	17	47117325	47117325	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	IGF2BP1-226	NM_006546	exon7	c.C690A	p.D230E	GATAGACGTGCAT	.	81.0	6.0	132.0	0.0	.	Atlas-SNP
PRKAR1A	5573	hgsc.bcm.edu	37	17	66511699	66511700	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	PRKAR1A-1141	NM_212471	exon2	c.159_160insT	p.Y53fs	.	.	173.0	71.0	78.0	0.0	.	Pindel
PRKCSH	5589	hgsc.bcm.edu	37	19	11558367	11558367	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	PRKCSH-90	NM_002743	exon11	c.G963A	p.E321E	GGAGGAGGAGGAA	.	104.0	10.0	129.0	0.0	.	Atlas-SNP
RFX1	5989	hgsc.bcm.edu	37	19	14088836	14088836	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	RFX1-92	NM_002918	exon8	c.G897C	p.E299D	GCCGCCCTCCACA	.	84.0	32.0	115.0	0.0	.	Atlas-SNP
SAMD4B	55095	hgsc.bcm.edu	37	19	39871263	39871263	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	SAMD4B-90	NM_018028	exon13	c.C1686G	p.G562G	AGCTGGCTCTGTG	.	72.0	4.0	115.0	0.0	.	Atlas-SNP
CEP104	9731	hgsc.bcm.edu	37	1	3732858	3732858	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	CEP104-92	NM_014704	exon21	c.C2648T	p.P883L	AGTGCCGGGGCCT	.	62.0	15.0	49.0	0.0	.	Atlas-SNP
MACF1	23499	hgsc.bcm.edu	37	1	39898819	39898820	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	MACF1-165	NM_012090	exon64	c.11371_11372insT	p.V3791fs	.	.	269.0	83.0	203.0	0.0	.	Atlas-Indel
DBNDD2	55861	hgsc.bcm.edu	37	20	44035159	44035159	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	DBNDD2-536	NM_018478	exon1	c.A68G	p.D23G	CCTCCGACCGCCG	.	61.0	8.0	54.0	0.0	.	Atlas-SNP
CLDN5	7122	hgsc.bcm.edu	37	22	19511427	19511427	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	CLDN5-492	NM_001130861	exon1	c.G607C	p.A203P	TGAGGGCCACACG	.	27.0	10.0	36.0	0.0	.	Atlas-SNP
GTF3C2	2976	hgsc.bcm.edu	37	2	27560194	27560194	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	GTF3C2-92	NM_001035521	exon7	c.T1044G	p.S348S	GGGCAGGTAGGGA	.	172.0	54.0	176.0	0.0	.	Atlas-SNP
SLC6A1	6529	hgsc.bcm.edu	37	3	11072862	11072862	+	Splice_Site	SNP	G	G	T	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	SLC6A1-92	NM_003042	exon13	c.1324-1G>T	.	CTTGCAGGGGGGT	.	65.0	28.0	72.0	0.0	.	Atlas-SNP
PRICKLE2	166336	hgsc.bcm.edu	37	3	64133073	64133073	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	PRICKLE2-95	NM_198859	exon7	c.C1093T	p.L365L	CTGACAGCCGGTT	.	107.0	30.0	108.0	0.0	.	Atlas-SNP
ALPK1	80216	hgsc.bcm.edu	37	4	113352982	113352982	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	ALPK1-337	NM_001102406	exon11	c.2278delA	p.R760fs	.	.	50.0	16.0	31.0	0.0	.	Atlas-Indel
TCERG1	10915	hgsc.bcm.edu	37	5	145838656	145838656	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	TCERG1-92	NM_001040006	exon4	c.G648A	p.Q216Q	GGCCCAGGCCCAG	.	73.0	19.0	19.0	0.0	.	Atlas-SNP
TCERG1	10915	hgsc.bcm.edu	37	5	145838662	145838662	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	TCERG1-92	NM_001040006	exon4	c.G654A	p.Q218Q	GGCCCAGGCCCAG	.	76.0	14.0	22.0	0.0	.	Atlas-SNP
DOCK2	1794	hgsc.bcm.edu	37	5	169482342	169482342	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	DOCK2-97	NM_004946	exon42	c.A4247T	p.D1416V	TCTTGGATGAACA	.	125.0	9.0	131.0	0.0	.	Atlas-SNP
DST	667	hgsc.bcm.edu	37	6	56482929	56482929	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	DST-523	NM_001723	exon23	c.T5903A	p.I1968K	AAAGTTATCTGTA	.	134.0	10.0	88.0	0.0	.	Atlas-SNP
IMPG1	3617	hgsc.bcm.edu	37	6	76633419	76633419	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	IMPG1-93	NM_001563	exon16	c.C2248G	p.P750A	GATCTGGCAACCT	.	26.0	10.0	32.0	0.0	.	Atlas-SNP
ANKIB1	54467	hgsc.bcm.edu	37	7	91974336	91974336	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	ANKIB1-432	NM_019004	exon7	c.G1041A	p.V347V	CCCTGTGGATATG	.	179.0	56.0	175.0	0.0	.	Atlas-SNP
TTC26	79989	hgsc.bcm.edu	37	7	138872237	138872237	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	TTC26-91	NM_001144923	exon16	c.G1412C	p.G471A	AACGGGGTGCCTG	.	154.0	48.0	125.0	0.0	.	Atlas-SNP
MSR1	4481	hgsc.bcm.edu	37	8	15967636	15967636	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	MSR1-91	NM_138716	exon9	c.C1125G	p.A375A	TGAACAGGCTCTT	.	81.0	25.0	61.0	0.0	.	Atlas-SNP
ATRX	546	hgsc.bcm.edu	37	X	76939322	76939322	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	ATRX-248	NM_000489	exon9	c.C1426T	p.Q476X	CATTCTGATGCAT	.	62.0	18.0	56.0	0.0	.	Atlas-SNP
