Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Algorithm
MUC2	4583	hgsc.bcm.edu	37	11	1093204	1093204	+	Missense_Mutation	SNP	C	C	A	rs56299570		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	MUC2-90	NM_002457	exon30	c.C5023A	p.P1675T	CCAACCCCAACAG	.	78.0	5.0	59.0	0.0	.	Atlas-SNP
LGALS12	85329	hgsc.bcm.edu	37	11	63276354	63276354	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	LGALS12-92	NM_001142536	exon3	c.A329G	p.N110S	TCTGCAACACCCT	.	133.0	36.0	112.0	0.0	.	Atlas-SNP
CCDC67	159989	hgsc.bcm.edu	37	11	93088643	93088643	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	CCDC67-91	NM_181645	exon3	c.C136T	p.R46X	GAGACACGATTAG	.	119.0	84.0	150.0	0.0	.	Atlas-SNP
AICDA	57379	hgsc.bcm.edu	37	12	8759524	8759524	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	AICDA-229	NM_020661	exon2	c.C93T	p.Y31Y	CACTACGTAGCAC	.	217.0	110.0	133.0	0.0	.	Atlas-SNP
ZNF84	7637	hgsc.bcm.edu	37	12	133634812	133634814	+	In_Frame_Del	DEL	ATC	ATC	-	novel		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	ATC	ATC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	ZNF84-90	NM_001127372	exon5	c.1510_1512del	p.504_504del	.	.	44.0	16.0	21.0	0.0	.	Atlas-Indel
GALK2	2585	hgsc.bcm.edu	37	15	49611899	49611899	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	GALK2-160	NM_002044	exon9	c.A1066G	p.M356V	GAAAACATGGTCC	.	162.0	79.0	134.0	0.0	.	Atlas-SNP
FAM63B	54629	hgsc.bcm.edu	37	15	59102553	59102553	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	FAM63B-90	NM_001040453	exon4	c.T1088C	p.I363T	TTGATATTCCTTT	.	146.0	35.0	132.0	0.0	.	Atlas-SNP
IGDCC4	57722	hgsc.bcm.edu	37	15	65688115	65688116	+	In_Frame_Ins	INS	-	-	GCC	novel		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	IGDCC4-93	NM_020962	exon7	c.1384_1385insGGC	p.F462delinsGF	.	.	47.0	10.0	8.0	0.0	.	Atlas-Indel
PRSS22	64063	hgsc.bcm.edu	37	16	2903974	2903974	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	PRSS22-90	NM_022119	exon5	c.C609T	p.I203I	CGAGTCGATGATA	.	117.0	21.0	81.0	0.0	.	Atlas-SNP
ITGAL	3683	hgsc.bcm.edu	37	16	30492905	30492905	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	ITGAL-994	NM_001114380	exon5	c.C473T	p.A158V	ATGTCGCGTGAGT	.	199.0	33.0	140.0	0.0	.	Atlas-SNP
NT5M	56953	hgsc.bcm.edu	37	17	17250223	17250223	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	NT5M-90	NM_020201	exon5	c.G649T	p.D217Y	GCGGACGACTGGA	.	41.0	4.0	18.0	0.0	.	Atlas-SNP
NEDD4L	23327	hgsc.bcm.edu	37	18	56035075	56035075	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	NEDD4L-658	NM_015277	exon21	c.G2101A	p.V701I	CTGGCCGTATTTC	.	172.0	21.0	199.0	0.0	.	Atlas-SNP
MATK	4145	hgsc.bcm.edu	37	19	3778527	3778527	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	MATK-521	NM_139354	exon12	c.C1141T	p.R381W	GAGCCCGTCCATA	.	211.0	45.0	85.0	0.0	.	Atlas-SNP
RAB8A	4218	hgsc.bcm.edu	37	19	16222725	16222725	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	RAB8A-227	NM_005370	exon1	c.A14G	p.Y5C	AGACCTACGATTA	.	105.0	40.0	84.0	0.0	.	Atlas-SNP
DMKN	93099	hgsc.bcm.edu	37	19	36002386	36002386	+	Missense_Mutation	SNP	C	C	T	rs117522133	byfrequency	TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	DMKN-155	NM_033317	exon5	c.G845A	p.S282N	CCGCCACTGCTGC	.	92.0	19.0	34.0	0.0	C|0.945;T|0.055	Atlas-SNP
DMKN	93099	hgsc.bcm.edu	37	19	36002410	36002412	+	In_Frame_Del	DEL	CTG	CTG	-	rs111543270		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	CTG	CTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	DMKN-155	NM_001126058	exon5	c.820_822del	p.274_274del	.	.	101.0	22.0	72.0	0.0	CTG|0.500;-|0.500	Atlas-Indel
DENND4B	9909	hgsc.bcm.edu	37	1	153907297	153907297	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	DENND4B-69	NM_014856	exon18	c.G2712A	p.Q904Q	CTGCTGCTGCTGC	.	82.0	7.0	66.0	0.0	.	Atlas-SNP
KRTAP10-7	386675	hgsc.bcm.edu	37	21	46021002	46021002	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	.	NM_198689	exon2	c.T466C	p.C156R	GCCTGCTGTGTGC	.	1047.0	70.0	524.0	0.0	.	Atlas-SNP
SCN9A	6335	hgsc.bcm.edu	37	2	167055351	167055351	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	SCN9A-181	NM_002977	exon27	c.C5765A	p.A1922D	TCAAAAGCCATAT	.	68.0	4.0	105.0	0.0	.	Atlas-SNP
EFHD1	80303	hgsc.bcm.edu	37	2	233527635	233527635	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	EFHD1-90	NM_001243252	exon2	c.C138T	p.F46F	GGACTTCGATGGC	.	86.0	66.0	106.0	0.0	.	Atlas-SNP
DGKD	8527	hgsc.bcm.edu	37	2	234354288	234354288	+	Missense_Mutation	SNP	C	C	T	rs139149715		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	DGKD-676	NM_152879	exon11	c.C1214T	p.P405L	TGCTGCCGCTCGG	.	136.0	85.0	126.0	0.0	C|1.000;T|0.000	Atlas-SNP
ITPR1	3708	hgsc.bcm.edu	37	3	4715944	4715944	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	ITPR1-710	NM_001099952	exon22	c.G2515C	p.E839Q	ACCATGGAGTTTG	.	69.0	29.0	78.0	0.0	.	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	37	3	41266124	41266124	+	Missense_Mutation	SNP	A	A	G	rs121913412	bycluster	TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	CTNNB1,gallbladder,other,0	CTNNB1-24361	NM_001098210	exon3	c.A121G	p.T41A	GCCACTACCACAG	.	167.0	63.0	170.0	0.0	.	Atlas-SNP
PHLDB2	90102	hgsc.bcm.edu	37	3	111632246	111632246	+	Silent	SNP	C	C	T	rs112434778	byfrequency	TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	PHLDB2-96	NM_001134439	exon3	c.C1416T	p.T472T	GACCACCGTGGAA	.	73.0	23.0	73.0	0.0	C|0.998;T|0.002	Atlas-SNP
HTRA3	94031	hgsc.bcm.edu	37	4	8293291	8293291	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	HTRA3-91	NM_053044	exon4	c.C903T	p.N301N	CATCAACGTGAGT	.	128.0	51.0	116.0	0.0	.	Atlas-SNP
EGFLAM	133584	hgsc.bcm.edu	37	5	38435283	38435283	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	EGFLAM-187	NM_001205301	exon16	c.C2211T	p.G737G	CATTGGCGGAGTC	.	97.0	7.0	68.0	0.0	.	Atlas-SNP
SPAM1	6677	hgsc.bcm.edu	37	7	123599735	123599735	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	SPAM1-94	NM_001174044	exon5	c.G1242A	p.K414K	TGGAAAGTTCACA	.	77.0	12.0	67.0	0.0	.	Atlas-SNP
BHLHB9	80823	hgsc.bcm.edu	37	X	102003966	102003967	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	BHLHB9-132	NM_001142525	exon4	c.43_44insA	p.E15fs	.	.	340.0	75.0	354.0	0.0	.	Atlas-Indel
