Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Algorithm
C2CD5	9847	hgsc.bcm.edu	37	12	22635541	22635541	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	.	NM_014802	exon14	c.G1687A	p.G563R	TTAGTCCAAACAA	.	146.0	52.0	132.0	0.0	.	Atlas-SNP
PHGR1	644844	hgsc.bcm.edu	37	15	40648372	40648372	+	Silent	SNP	T	T	C	rs12900982	byfrequency;by1000genomes	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	.	NM_001145643	exon3	c.T117C	p.G39G	CCATGGTCCAGGG	.	18.0	5.0	7.0	0.0	T|0.839;C|0.161	Atlas-SNP
WDR72	256764	hgsc.bcm.edu	37	15	53998158	53998158	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	WDR72-92	NM_182758	exon10	c.T1068A	p.D356E	AGGAACATCAGGG	.	71.0	31.0	66.0	0.0	.	Atlas-SNP
PARP6	56965	hgsc.bcm.edu	37	15	72543246	72543246	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	PARP6-522	NM_020214	exon17	c.C1358T	p.P453L	TTGGCAGGAGGGC	.	172.0	78.0	175.0	0.0	.	Atlas-SNP
UBL7	84993	hgsc.bcm.edu	37	15	74740854	74740854	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	UBL7-91	NM_201265	exon10	c.C970T	p.H324Y	GGGCATGCTGTAG	.	225.0	101.0	225.0	0.0	.	Atlas-SNP
PCSK4	54760	hgsc.bcm.edu	37	19	1488279	1488279	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	PCSK4-90	NM_017573	exon3	c.G295T	p.V99L	ACTGCACCTGCAG	.	139.0	49.0	110.0	0.0	.	Atlas-SNP
PRPF38A	84950	hgsc.bcm.edu	37	1	52878204	52878204	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	PRPF38A-90	NM_032864	exon5	c.G517A	p.E173K	TTAGAGGAAGCTG	.	98.0	7.0	115.0	0.0	.	Atlas-SNP
CENPF	1063	hgsc.bcm.edu	37	1	214816610	214816610	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	CENPF-567	NM_016343	exon12	c.C4929G	p.L1643L	ACGACTCCAGCTA	.	140.0	71.0	145.0	0.0	.	Atlas-SNP
RYR2	6262	hgsc.bcm.edu	37	1	237811822	237811822	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	RYR2-158	NM_001035	exon49	c.7420delA	p.R2474fs	.	.	210.0	94.0	215.0	0.0	.	Atlas-Indel
GNAS	2778	hgsc.bcm.edu	37	20	57484420	57484420	+	Missense_Mutation	SNP	C	C	T	rs11554273	bycluster	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	GNAS,colon,carcinoma,0	GNAS-4767	NM_080426	exon7	c.C559T	p.R187C	CGCTGCCGTGTCC	.	133.0	64.0	143.0	0.0	C|1.000	Atlas-SNP
KRTAP10-2	386679	hgsc.bcm.edu	37	21	45970771	45970771	+	Missense_Mutation	SNP	C	C	T	rs200215960	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	KRTAP10-2-135	NM_198693	exon1	c.G571A	p.V191I	AGCAGACAGGCTT	.	178.0	16.0	146.0	0.0	C|0.956;T|0.044	Atlas-SNP
KRTAP10-2	386679	hgsc.bcm.edu	37	21	45970772	45970772	+	Silent	SNP	A	A	G	rs76021731	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	KRTAP10-2-135	NM_198693	exon1	c.T570C	p.P190P	GCAGACAGGCTTG	.	173.0	22.0	136.0	0.0	A|0.908;G|0.092	Atlas-SNP
KRTAP10-2	386679	hgsc.bcm.edu	37	21	45970774	45970774	+	Missense_Mutation	SNP	G	G	A	rs76536096	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	KRTAP10-2-135	NM_198693	exon1	c.C568T	p.P190S	AGACAGGCTTGCA	.	170.0	24.0	135.0	0.0	G|0.917;A|0.083	Atlas-SNP
TMEM247	388946	hgsc.bcm.edu	37	2	46707887	46707887	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	.	NM_001145051	exon2	c.A461C	p.E154A	AGCAAGAGGCGGC	.	181.0	16.0	82.0	0.0	.	Atlas-SNP
CHL1	10752	hgsc.bcm.edu	37	3	391155	391155	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	CHL1-583	NM_001253387	exon9	c.A914T	p.K305I	AGGACAAAGGAAA	.	134.0	59.0	83.0	0.0	.	Atlas-SNP
SHOX2	6474	hgsc.bcm.edu	37	3	157823581	157823582	+	In_Frame_Ins	INS	-	-	CACCTCCTC	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	SHOX2-90	NM_003030	exon1	c.233_234insGAGGAGGTG	p.V78delinsGGGV	.	.	40.0	12.0	19.0	0.0	.	Atlas-Indel
C5orf42	65250	hgsc.bcm.edu	37	5	37196023	37196023	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	C5orf42-94	NM_023073	exon21	c.G3748A	p.A1250T	AAAATGCGATACC	.	320.0	19.0	342.0	0.0	.	Atlas-SNP
SVEP1	79987	hgsc.bcm.edu	37	9	113196694	113196694	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	SVEP1-75	NM_153366	exon30	c.G4981C	p.G1661R	GGAAGCCTGGATC	.	161.0	59.0	216.0	0.0	.	Atlas-SNP
CACNA1F	778	hgsc.bcm.edu	37	X	49067892	49067892	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	CACNA1F-176	NM_005183	exon36	c.G4183A	p.G1395R	GATTTCCGGGAAG	.	1380.0	184.0	504.0	0.0	.	Atlas-SNP
