Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Algorithm
MEN1	4221	hgsc.bcm.edu	37	11	64573817	64573817	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	MEN1-3017	NM_130802	exon7	c.C951G	p.Y317X	CCGATAGTAGGTC	.	272.0	230.0	340.0	1.0	.	Atlas-SNP
FOXG1	2290	hgsc.bcm.edu	37	14	29237769	29237769	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	FOXG1-660	NM_005249	exon1	c.G1284A	p.S428S	GACTTCGCAGAGC	.	116.0	15.0	94.0	0.0	.	Atlas-SNP
LCTL	197021	hgsc.bcm.edu	37	15	66850065	66850065	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	LCTL-92	NM_207338	exon8	c.A917G	p.Y306C	CCAATGTAGTCCT	.	120.0	7.0	105.0	0.0	.	Atlas-SNP
G6PC	2538	hgsc.bcm.edu	37	17	41063167	41063167	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	G6PC-292	NM_000151	exon5	c.C798T	p.G266G	CCTGGGCACGCTC	.	148.0	8.0	156.0	0.0	.	Atlas-SNP
SCRN2	90507	hgsc.bcm.edu	37	17	45916995	45916995	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	SCRN2-91	NM_001145023	exon4	c.G371A	p.R124Q	CTGCTCCGTTCCA	.	123.0	111.0	142.0	1.0	.	Atlas-SNP
DSG2	1829	hgsc.bcm.edu	37	18	29102113	29102113	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	DSG2-563	NM_001943	exon6	c.C591G	p.S197S	AATTTCCTATAGA	.	83.0	69.0	148.0	0.0	.	Atlas-SNP
ELSPBP1	64100	hgsc.bcm.edu	37	19	48525476	48525476	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	ELSPBP1-90	NM_022142	exon6	c.T564C	p.Y188Y	CAACTATAAAAAC	.	305.0	22.0	166.0	0.0	.	Atlas-SNP
HRC	3270	hgsc.bcm.edu	37	19	49657751	49657751	+	Silent	SNP	A	A	G	rs142699460	byfrequency	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	HRC-91	NM_002152	exon1	c.T744C	p.D248D	ATCATCATCGTCA	.	150.0	13.0	78.0	0.0	A|0.998;G|0.002	Atlas-SNP
ZNF808	388558	hgsc.bcm.edu	37	19	53058713	53058713	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	.	NM_001039886	exon5	c.A2544G	p.K848K	TTACAAATGTGAA	.	108.0	39.0	52.0	0.0	.	Atlas-SNP
C1orf127	148345	hgsc.bcm.edu	37	1	11008485	11008485	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	C1orf127-91	NM_001170754	exon12	c.G1707T	p.G569G	CACATCCCCGCTT	.	97.0	80.0	119.0	0.0	.	Atlas-SNP
CNBD2	140894	hgsc.bcm.edu	37	20	34618419	34618419	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	.	NM_080834	exon12	c.C1568T	p.P523L	ACAACCCTAAGTC	.	200.0	21.0	255.0	0.0	.	Atlas-SNP
RFPL1	5988	hgsc.bcm.edu	37	22	29837551	29837551	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	RFPL1-90	NM_021026	exon2	c.G394C	p.D132H	GATGCCGACACAG	.	188.0	133.0	173.0	1.0	.	Atlas-SNP
ITGB6	3694	hgsc.bcm.edu	37	2	160994644	160994644	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	ITGB6-227	NM_000888	exon9	c.G1174A	p.A392T	AGATGGCTGTAAA	.	175.0	15.0	221.0	0.0	.	Atlas-SNP
DOCK10	55619	hgsc.bcm.edu	37	2	225702542	225702542	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	DOCK10-92	NM_014689	exon25	c.G2787C	p.L929L	GTCGGTCAGAACC	.	37.0	24.0	37.0	0.0	.	Atlas-SNP
ITIH1	3697	hgsc.bcm.edu	37	3	52819196	52819196	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	ITIH1-93	NM_001166434	exon10	c.T1118C	p.I373T	GGCGCATTGCTGA	.	131.0	117.0	157.0	1.0	.	Atlas-SNP
FXR1	8087	hgsc.bcm.edu	37	3	180685937	180685937	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	FXR1-153	NM_001013438	exon14	c.C1297T	p.R433X	GACAGCCGACATC	.	199.0	173.0	203.0	0.0	.	Atlas-SNP
HEXB	3074	hgsc.bcm.edu	37	5	73981246	73981246	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	HEXB-91	NM_000521	exon1	c.C161T	p.P54L	CGGGGCCGGCGCT	.	42.0	19.0	11.0	0.0	.	Atlas-SNP
BLOC1S5	63915	hgsc.bcm.edu	37	6	8041503	8041503	+	Splice_Site	SNP	T	T	A	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	.	NM_001199322	exon5	c.4-2A>T	.	TTTTCCTATTAAA	.	32.0	21.0	22.0	0.0	.	Atlas-SNP
POM121L12	285877	hgsc.bcm.edu	37	7	53103984	53103984	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	.	NM_182595	exon1	c.G620A	p.R207K	GTGGCAGGCGGAA	.	127.0	56.0	65.0	0.0	.	Atlas-SNP
MLXIPL	51085	hgsc.bcm.edu	37	7	73011760	73011760	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	MLXIPL-91	NM_032952	exon9	c.C1355A	p.P452H	GCTGCAGGAGCAG	.	27.0	6.0	12.0	0.0	.	Atlas-SNP
FLNC	2318	hgsc.bcm.edu	37	7	128496863	128496863	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	FLNC,NS,carcinoma,0	FLNC-141	NM_001458	exon45	c.C7449G	p.N2483K	GTTCAACGGTGCC	.	303.0	123.0	217.0	0.0	.	Atlas-SNP
KEL	3792	hgsc.bcm.edu	37	7	142651025	142651025	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	KEL-93	NM_000420	exon9	c.G943T	p.D315Y	ACCAGTCGATGGC	.	114.0	50.0	74.0	0.0	.	Atlas-SNP
ZBTB10	65986	hgsc.bcm.edu	37	8	81399960	81399962	+	In_Frame_Del	DEL	CCT	CCT	-	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	CCT	CCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	ZBTB10-522	NM_023929	exon1	c.914_916del	p.305_306del	.	.	67.0	33.0	38.0	0.0	.	Atlas-Indel
ZNF157	7712	hgsc.bcm.edu	37	X	47230123	47230123	+	Missense_Mutation	SNP	C	C	A	rs186352953	alternate_allele	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	ZNF157-130	NM_003446	exon1	c.C56A	p.P19H	GAGAACCTGGCAG	.	375.0	180.0	251.0	0.0	C|1.000;T|0.000	Atlas-SNP
MAGEA12	4111	hgsc.bcm.edu	37	X	151900366	151900366	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	MAGEA12-131	NM_005367	exon2	c.C435T	p.D145D	AAAGAAGTCCTGG	.	539.0	39.0	680.0	0.0	.	Atlas-SNP
