Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Algorithm
RBM20	282996	hgsc.bcm.edu	37	10	112559623	112559623	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	.	NM_001134363	exon7	c.G1747A	p.G583S	ATCAATGGTGAGA	.	159.0	49.0	186.0	0.0	.	Atlas-SNP
NUP160	23279	hgsc.bcm.edu	37	11	47869867	47869867	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	NUP160-209	NM_015231	exon1	c.G106A	p.A36T	CCGCCGCCATCTT	.	88.0	6.0	52.0	0.0	.	Atlas-SNP
GPR137	56834	hgsc.bcm.edu	37	11	64056752	64056777	+	Frame_Shift_Del	DEL	CCCAGGATCCTGGGGGTCGTGGCTAC	CCCAGGATCCTGGGGGTCGTGGCTAC	-	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	CCCAGGATCCTGGGGGTCGTGGCTAC	CCCAGGATCCTGGGGGTCGTGGCTAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	GPR137-68	NM_020155	exon7	c.1168_1193del	p.390_398del	.	.	108.0	17.0	167.0	0.0	.	Atlas-Indel
NOP2	4839	hgsc.bcm.edu	37	12	6672532	6672532	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	NOP2-92	NM_006170	exon8	c.C825T	p.S275S	TCCATAGGAGTAG	.	77.0	40.0	84.0	0.0	.	Atlas-SNP
KRT6A	3853	hgsc.bcm.edu	37	12	52882329	52882329	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	KRT6A,NS,carcinoma,+2	KRT6A-27	NM_005554	exon7	c.G1207A	p.A403T	GGTTGGCGCACTG	.	296.0	160.0	302.0	0.0	.	Atlas-SNP
NID2	22795	hgsc.bcm.edu	37	14	52520649	52520649	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	NID2-158	NM_007361	exon5	c.C1077T	p.S359S	CAAGGTGGAAGAT	.	108.0	41.0	100.0	0.0	.	Atlas-SNP
TTLL5	23093	hgsc.bcm.edu	37	14	76232414	76232414	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	TTLL5-92	NM_015072	exon20	c.A1718C	p.Q573P	TTACCCAACCAGC	.	62.0	29.0	77.0	0.0	.	Atlas-SNP
SEL1L	6400	hgsc.bcm.edu	37	14	81961479	81961479	+	Silent	SNP	A	A	C	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	SEL1L-227	NM_005065	exon11	c.T1131G	p.V377V	AAGACCAACCTGA	.	110.0	21.0	168.0	0.0	.	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	37	14	105407448	105407448	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	AHNAK2-47	NM_138420	exon7	c.A14340G	p.E4780E	AGAAGATTCAAAG	.	252.0	84.0	143.0	0.0	.	Atlas-SNP
ERI2	112479	hgsc.bcm.edu	37	16	20810279	20810279	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	ERI2-153	NM_001142725	exon9	c.G843A	p.K281K	AGGCTCCTTATTA	.	62.0	8.0	47.0	0.0	.	Atlas-SNP
MYH4	4622	hgsc.bcm.edu	37	17	10358566	10358566	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	MYH4-102	NM_017533	exon20	c.G2221A	p.D741N	TGCTGTCAATGAA	.	62.0	6.0	102.0	0.0	.	Atlas-SNP
ELAC2	60528	hgsc.bcm.edu	37	17	12905890	12905890	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	ELAC2-90	NM_001165962	exon12	c.G966C	p.G322G	GTCAGGCCCAAAC	.	97.0	5.0	162.0	0.0	.	Atlas-SNP
NOTCH3	4854	hgsc.bcm.edu	37	19	15300189	15300189	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	NOTCH3-855	NM_000435	exon7	c.G1087C	p.D363H	TAGCATCCTCGTG	.	543.0	44.0	143.0	0.0	.	Atlas-SNP
MAG	4099	hgsc.bcm.edu	37	19	35800808	35800808	+	Silent	SNP	C	C	T	rs200957534		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	MAG-947	NM_001199216	exon8	c.C1188T	p.C396C	CCACTGCGCGGCA	.	218.0	160.0	70.0	0.0	.	Atlas-SNP
HDAC1	3065	hgsc.bcm.edu	37	1	32797321	32797321	+	Missense_Mutation	SNP	G	G	A	rs1140658	alternate_allele	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	HDAC1-659	NM_004964	exon11	c.G1133A	p.G378E	CACCTGGGGTCCA	.	130.0	80.0	190.0	1.0	G|1.000;|0.000	Atlas-SNP
KRTCAP2	200185	hgsc.bcm.edu	37	1	155141958	155141958	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	KRTCAP2-90	NM_173852	exon5	c.C447T	p.L149L	TGGTGTGAGGACT	.	260.0	170.0	271.0	0.0	.	Atlas-SNP
OBSCN	84033	hgsc.bcm.edu	37	1	228561682	228561682	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	OBSCN-403	NM_001271223	exon106	c.C25224T	p.F8408F	TTCCTTCCGGCTC	.	345.0	83.0	339.0	0.0	.	Atlas-SNP
KIF26B	55083	hgsc.bcm.edu	37	1	245851927	245851927	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	KIF26B-25	NM_018012	exon12	c.C5642T	p.P1881L	TCCCGCCGGCCAT	.	51.0	44.0	32.0	0.0	.	Atlas-SNP
TOR1AIP2	163590	hgsc.bcm.edu	37	1	179816744	179816745	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	TOR1AIP2-69	NM_001199260	exon6	c.581_582del	p.194_194del	.	.	91.0	15.0	94.0	0.0	.	Atlas-Indel
CENPF	1063	hgsc.bcm.edu	37	1	214814882	214814883	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	CENPF-567	NM_016343	exon12	c.3201_3202insA	p.R1067fs	.	.	222.0	78.0	245.0	0.0	.	Pindel
DDRGK1	65992	hgsc.bcm.edu	37	20	3181069	3181069	+	Silent	SNP	C	C	T	rs148502836		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	DDRGK1-90	NM_023935	exon3	c.G327A	p.A109A	AGTTTCCGCTGGC	.	173.0	42.0	120.0	0.0	C|1.000;T|0.000	Atlas-SNP
ACSL3	2181	hgsc.bcm.edu	37	2	223789243	223789243	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	ACSL3-228	NM_004457	exon11	c.C1222G	p.L408V	CGTAATCTGTTTA	.	381.0	83.0	197.0	0.0	.	Atlas-SNP
MFF	56947	hgsc.bcm.edu	37	2	228195447	228195447	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	MFF-153	NM_020194	exon4	c.G144A	p.R48R	AATGAGGGTCCCA	.	420.0	69.0	319.0	0.0	.	Atlas-SNP
CHCHD4	131474	hgsc.bcm.edu	37	3	14154643	14154644	+	Frame_Shift_Del	DEL	CC	CC	-	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	CHCHD4-90	NM_144636	exon4	c.212_213del	p.71_71del	.	.	225.0	85.0	230.0	0.0	.	Atlas-Indel
FBN2	2201	hgsc.bcm.edu	37	5	127728908	127728908	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	FBN2-146	NM_001999	exon10	c.C1385A	p.P462H	CCTCCAGGGATGG	.	84.0	44.0	105.0	0.0	.	Atlas-SNP
TTC1	7265	hgsc.bcm.edu	37	5	159491977	159491977	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	TTC1-91	NM_003314	exon8	c.T784G	p.F262V	CGACCTTTTGGGC	.	56.0	34.0	62.0	0.0	.	Atlas-SNP
LAT2	7462	hgsc.bcm.edu	37	7	73636002	73636002	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	LAT2-90	NM_032463	exon10	c.G368A	p.R123Q	GGGGGCGGTTCTC	.	72.0	13.0	68.0	0.0	.	Atlas-SNP
CACNA2D1	781	hgsc.bcm.edu	37	7	81591223	81591224	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	CACNA2D1-96	NM_000722	exon36	c.2953_2954del	p.985_985del	.	.	71.0	22.0	68.0	0.0	.	Atlas-Indel
BRF2	55290	hgsc.bcm.edu	37	8	37702542	37702542	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	BRF2-90	NM_018310	exon4	c.G726A	p.R242R	TGAAAGCCGATCT	.	703.0	51.0	137.0	0.0	.	Atlas-SNP
ENPP2	5168	hgsc.bcm.edu	37	8	120581567	120581567	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	ENPP2-292	NM_001130863	exon22	c.G2036A	p.R679Q	TCAGGCCGGACGC	.	141.0	10.0	135.0	0.0	.	Atlas-SNP
UNC13B	10497	hgsc.bcm.edu	37	9	35375173	35375173	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	UNC13B-157	NM_006377	exon13	c.G1343A	p.R448H	CTACACGCACTTC	.	187.0	82.0	222.0	0.0	.	Atlas-SNP
SPIN2B	474343	hgsc.bcm.edu	37	X	57146333	57146333	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	SPIN2B-90	NM_001006681	exon2	c.G730C	p.D244H	CATCATCAAACTT	.	1390.0	416.0	1499.0	2.0	.	Atlas-SNP
ZXDB	158586	hgsc.bcm.edu	37	X	57619015	57619015	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	ZXDB-130	NM_007157	exon1	c.G534A	p.L178L	GCTGTTGCGCTTT	.	119.0	38.0	75.0	0.0	.	Atlas-SNP
HEPH	9843	hgsc.bcm.edu	37	X	65423292	65423292	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	HEPH-135	NM_001130860	exon13	c.C2173T	p.Q725X	GGCCACCAAGCCA	.	237.0	12.0	219.0	0.0	.	Atlas-SNP
