Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Algorithm
PLAC9	219348	hgsc.bcm.edu	37	10	81904035	81904035	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	PLAC9-90	NM_001012973	exon3	c.G219C	p.L73L	GGGCCTGCTGGAG	.	75.0	29.0	47.0	0.0	.	Atlas-SNP
MEN1	4221	hgsc.bcm.edu	37	11	64572613	64572613	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	MEN1-3017	NM_130802	exon9	c.C1258T	p.R420X	AGAATCGCAGCAG	.	92.0	68.0	140.0	1.0	.	Atlas-SNP
KRTAP5-5	439915	hgsc.bcm.edu	37	11	1651199	1651200	+	In_Frame_Ins	INS	-	-	GGCCGTGGCTCC	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	KRTAP5-5-23	NM_001001480	exon1	c.129_130insGGCCGTGGCTCC	p.G43delinsGGRGS	.	.	55.0	18.0	29.0	0.0	.	Atlas-Indel
ZC3H13	23091	hgsc.bcm.edu	37	13	46542982	46542982	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	ZC3H13-92	NM_015070	exon14	c.A3697T	p.R1233X	TATCTCTTGAGCC	.	126.0	40.0	92.0	0.0	.	Atlas-SNP
SSTR1	6751	hgsc.bcm.edu	37	14	38679311	38679311	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	SSTR1-947	NM_001049	exon3	c.C717A	p.I239I	GGCTATCTGCCTG	.	133.0	40.0	140.0	0.0	.	Atlas-SNP
EXD1	161829	hgsc.bcm.edu	37	15	41501767	41501767	+	Missense_Mutation	SNP	G	G	T	rs113822955	alternate_allele	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	EXD1-91	NM_152596	exon5	c.C292A	p.Q98K	CATTCTGCTTCTT	.	132.0	88.0	136.0	0.0	G|0.500;A|0.500	Atlas-SNP
NTRK3	4916	hgsc.bcm.edu	37	15	88678334	88678334	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	NTRK3-3538	NM_001007156	exon10	c.C1202A	p.P401Q	TCACCTGGAAAGG	.	212.0	83.0	257.0	0.0	.	Atlas-SNP
FTO	79068	hgsc.bcm.edu	37	16	53860242	53860242	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	FTO-68	NM_001080432	exon3	c.C590T	p.A197V	GCAGAGCAGCATA	.	277.0	90.0	240.0	0.0	.	Atlas-SNP
GPR142	350383	hgsc.bcm.edu	37	17	72368576	72368576	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	GPR142,NS,carcinoma,+1	GPR142-93	NM_181790	exon4	c.C1226G	p.A409G	CGGCAGCCAACTT	.	137.0	35.0	99.0	0.0	.	Atlas-SNP
NETO1	81832	hgsc.bcm.edu	37	18	70417313	70417313	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	NETO1-94	NM_138966	exon9	c.G1525A	p.D509N	CTTTATCGTGTCT	.	46.0	17.0	48.0	0.0	.	Atlas-SNP
ZNF555	148254	hgsc.bcm.edu	37	19	2853644	2853644	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	ZNF555-91	NM_001172775	exon4	c.G1578C	p.V526V	ACATGTGAGAACG	.	156.0	40.0	110.0	0.0	.	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	37	19	9058325	9058325	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	MUC16-566	NM_024690	exon3	c.C29121A	p.S9707R	ACCCCTGCTCATA	.	301.0	67.0	207.0	0.0	.	Atlas-SNP
RASGRP4	115727	hgsc.bcm.edu	37	19	38905653	38905653	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	RASGRP4-660	NM_001146202	exon9	c.C1023G	p.L341L	GTCCTTGAGGTGC	.	287.0	16.0	139.0	0.0	.	Atlas-SNP
KCNJ14	3770	hgsc.bcm.edu	37	19	48965218	48965218	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	KCNJ14-91	NM_013348	exon2	c.C237G	p.A79A	GTTCACCACATGC	.	327.0	69.0	147.0	0.0	.	Atlas-SNP
SEMA6C	10500	hgsc.bcm.edu	37	1	151105831	151105831	+	Missense_Mutation	SNP	T	T	C	rs146921438	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	SEMA6C-92	NM_001178061	exon20	c.A2018G	p.E673G	GGAGTCTCGATGT	.	66.0	56.0	14.0	0.0	T|0.996;C|0.004	Atlas-SNP
CD1A	909	hgsc.bcm.edu	37	1	158224992	158224992	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	CD1A-93	NM_001763	exon2	c.C177A	p.S59R	GGACAGCAATTCC	.	187.0	128.0	223.0	0.0	.	Atlas-SNP
KCNT2	343450	hgsc.bcm.edu	37	1	196227367	196227367	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	KCNT2-159	NM_198503	exon26	c.G3168A	p.V1056V	ATTTTTCACAAGT	.	47.0	17.0	46.0	0.0	.	Atlas-SNP
ZNRF3	84133	hgsc.bcm.edu	37	22	29439356	29439372	+	Frame_Shift_Del	DEL	CTGATGAACATCGTCAA	CTGATGAACATCGTCAA	-	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	CTGATGAACATCGTCAA	CTGATGAACATCGTCAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	ZNRF3-69	NM_032173	exon4	c.270_286del	p.90_96del	.	.	44.0	16.0	101.0	0.0	.	Atlas-Indel
ARGFX	503582	hgsc.bcm.edu	37	3	121289622	121289622	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	ARGFX-93	NM_001012659	exon2	c.C62T	p.S21F	ATTATTCCAACAT	.	303.0	115.0	350.0	1.0	.	Atlas-SNP
COPG1	22820	hgsc.bcm.edu	37	3	128974928	128974928	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	.	NM_016128	exon8	c.C510A	p.S170R	GTGCAGCTTTGAC	.	155.0	8.0	131.0	0.0	.	Atlas-SNP
OTOP1	133060	hgsc.bcm.edu	37	4	4228456	4228456	+	Silent	SNP	G	G	T	rs73191872	bycluster;by1000genomes	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	OTOP1-92	NM_177998	exon1	c.C136A	p.R46R	CGCCCCGCCGGGG	.	66.0	15.0	7.0	0.0	.	Atlas-SNP
IRF2	3660	hgsc.bcm.edu	37	4	185340713	185340715	+	In_Frame_Del	DEL	TCT	TCT	-	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	TCT	TCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	IRF2-91	NM_002199	exon3	c.96_98del	p.32_33del	.	.	24.0	13.0	38.0	0.0	.	Atlas-Indel
CCDC125	202243	hgsc.bcm.edu	37	5	68599726	68599726	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	CCDC125-90	NM_176816	exon6	c.G648C	p.E216D	CAAATTCTCTTTG	.	29.0	8.0	31.0	0.0	.	Atlas-SNP
HIST1H2AG	8969	hgsc.bcm.edu	37	6	27101075	27101075	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	HIST1H2AG-68	NM_021064	exon1	c.G225C	p.K75N	CAACAAGAAGACC	.	301.0	212.0	242.0	0.0	.	Atlas-SNP
ARPC1B	10095	hgsc.bcm.edu	37	7	98988567	98988567	+	Silent	SNP	G	G	A	rs199528626		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	ARPC1B-90	NM_005720	exon6	c.G552A	p.P184P	CACCCCGTGGGGC	.	91.0	25.0	70.0	0.0	G|0.999;A|0.000	Atlas-SNP
HYAL4	23553	hgsc.bcm.edu	37	7	123516971	123516971	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	HYAL4-91	NM_012269	exon5	c.C1208A	p.A403E	ACCCTGCAAGTTA	.	222.0	57.0	201.0	0.0	.	Atlas-SNP
MEGF9	1955	hgsc.bcm.edu	37	9	123476135	123476135	+	Missense_Mutation	SNP	T	T	C	rs201806643		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	.	NM_001080497	exon1	c.A502G	p.T168A	GAGTCGTGGGCGC	.	60.0	30.0	8.0	0.0	.	Atlas-SNP
