Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Algorithm
RASGEF1A	221002	hgsc.bcm.edu	37	10	43698838	43698838	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	RASGEF1A-227	NM_145313	exon3	c.T229A	p.S77T	CCCGGGAGCTCAG	.	285.0	35.0	195.0	0.0	.	Atlas-SNP
ATN1	1822	hgsc.bcm.edu	37	12	7045924	7045924	+	Missense_Mutation	SNP	G	G	T	rs199988271	alternate_allele	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	ATN1-139	NM_001007026	exon5	c.G1494T	p.Q498H	GCAGCAGCAGCAG	.	182.0	12.0	99.0	0.0	G|0.999;A|0.001	Atlas-SNP
DAAM1	23002	hgsc.bcm.edu	37	14	59798591	59798591	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	DAAM1-227	NM_001270520	exon15	c.G1921T	p.D641Y	ATTCTAGATCTTG	.	100.0	16.0	82.0	0.0	.	Atlas-SNP
SERPINA10	51156	hgsc.bcm.edu	37	14	94752476	94752476	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	SERPINA10-228	NM_016186	exon4	c.C1112A	p.S371X	GTAGCTGAGAGTT	.	114.0	37.0	108.0	0.0	.	Atlas-SNP
TP53	7157	hgsc.bcm.edu	37	17	7578378	7578392	+	In_Frame_Del	DEL	ATCTGAGCAGCGCTC	ATCTGAGCAGCGCTC	-	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	ATCTGAGCAGCGCTC	ATCTGAGCAGCGCTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	TP53,NS,carcinoma,+2	TP53-70225	NM_001126117	exon1	c.143_157del	p.48_53del	.	.	132.0	93.0	142.0	0.0	.	Atlas-Indel
NF1	4763	hgsc.bcm.edu	37	17	29554308	29554317	+	In_Frame_Del	DEL	AGGTATGCCC	AGGTATGCCC	-	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	AGGTATGCCC	AGGTATGCCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	NF1-3353	NM_001042492	exon19	c.2323_2325del	p.775_775del	.	.	50.0	38.0	86.0	0.0	.	Atlas-Indel
C18orf25	147339	hgsc.bcm.edu	37	18	43796373	43796373	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	C18orf25-515	NM_001008239	exon2	c.G527A	p.S176N	ATCGGAGCCAAAA	.	168.0	154.0	161.0	1.0	.	Atlas-SNP
ZZZ3	26009	hgsc.bcm.edu	37	1	78098574	78098574	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	ZZZ3-157	NM_015534	exon5	c.G466T	p.D156Y	GAAAATCTGCATC	.	159.0	14.0	120.0	0.0	.	Atlas-SNP
PLXNA2	5362	hgsc.bcm.edu	37	1	208202216	208202216	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	PLXNA2-92	NM_025179	exon30	c.C5397G	p.L1799L	GGCATAGAGCAGC	.	171.0	152.0	136.0	0.0	.	Atlas-SNP
L3MBTL1	26013	hgsc.bcm.edu	37	20	42157986	42157986	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	L3MBTL1-227	NM_032107	exon9	c.A968G	p.Y323C	CCATGTACTTCAT	.	446.0	107.0	177.0	0.0	.	Atlas-SNP
CEBPB	1051	hgsc.bcm.edu	37	20	48807902	48807902	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	CEBPB-226	NM_005194	exon1	c.331delT	p.S111fs	.	.	53.0	18.0	15.0	0.0	.	Atlas-Indel
HSPA13	6782	hgsc.bcm.edu	37	21	15750609	15750609	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	HSPA13-226	NM_006948	exon3	c.G491A	p.G164E	GGCATTCCAAGAT	.	73.0	44.0	55.0	0.0	.	Atlas-SNP
SPECC1L	23384	hgsc.bcm.edu	37	22	24717579	24717579	+	Missense_Mutation	SNP	G	G	T	rs113473482	alternate_allele	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	SPECC1L-92	NM_001145468	exon4	c.G631T	p.A211S	ATGCGTGCCCAGC	.	57.0	14.0	56.0	0.0	G|0.500;A|0.500	Atlas-SNP
GALNT5	11227	hgsc.bcm.edu	37	2	158115239	158115239	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	GALNT5-290	NM_014568	exon1	c.C645G	p.D215E	AAGGGACTTGAAT	.	87.0	40.0	56.0	0.0	.	Atlas-SNP
EPB41L5	57669	hgsc.bcm.edu	37	2	120834600	120834601	+	Frame_Shift_Del	DEL	TT	TT	-	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	EPB41L5-91	NM_001184939	exon8	c.558_559del	p.186_187del	.	.	58.0	56.0	77.0	0.0	.	Atlas-Indel
TOPAZ1	375337	hgsc.bcm.edu	37	3	44308516	44308516	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	.	NM_001145030	exon6	c.G3048A	p.M1016I	CTTTATGGTCGGC	.	61.0	5.0	68.0	0.0	.	Atlas-SNP
DENND6A	201627	hgsc.bcm.edu	37	3	57616477	57616477	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	.	NM_152678	exon17	c.C1482G	p.T494T	TCTAGAGGTTAGC	.	36.0	21.0	61.0	0.0	.	Atlas-SNP
CNTN3	5067	hgsc.bcm.edu	37	3	74385793	74385793	+	Missense_Mutation	SNP	C	C	T	rs187262258		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	CNTN3-137	NM_020872	exon11	c.G1381A	p.D461N	CTCCATCGTTTAA	.	78.0	69.0	81.0	0.0	C|0.999;T|0.000	Atlas-SNP
ZNF732	654254	hgsc.bcm.edu	37	4	289888	289888	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	ZNF732-22	NM_001137608	exon1	c.C57T	p.C19C	GTCCAGGCATTTC	.	110.0	6.0	95.0	0.0	.	Atlas-SNP
CRIPAK	285464	hgsc.bcm.edu	37	4	1388867	1388867	+	Missense_Mutation	SNP	A	A	C	rs76058011	byfrequency	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	CRIPAK-90	NM_175918	exon1	c.A568C	p.I190L	CGCCTGATCACAC	.	145.0	30.0	37.0	0.0	A|0.994;C|0.006	Atlas-SNP
TRIO	7204	hgsc.bcm.edu	37	5	14387852	14387852	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	TRIO-562	NM_007118	exon23	c.C3777T	p.L1259L	AAGTCTCCAGCTA	.	126.0	48.0	119.0	0.0	.	Atlas-SNP
SNCAIP	9627	hgsc.bcm.edu	37	5	121758644	121758644	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	SNCAIP-92	NM_005460	exon4	c.G212T	p.S71I	TGTACAGTAAGTT	.	259.0	118.0	255.0	0.0	.	Atlas-SNP
GNPDA1	10007	hgsc.bcm.edu	37	5	141382735	141382735	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	GNPDA1-90	NM_005471	exon6	c.C687G	p.F229L	CTGCTGGAAGGCA	.	184.0	92.0	176.0	0.0	.	Atlas-SNP
ST18	9705	hgsc.bcm.edu	37	8	53044607	53044607	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	ST18-95	NM_014682	exon22	c.G2577C	p.W859C	CAGTTTCCAGGAG	.	330.0	170.0	179.0	0.0	.	Atlas-SNP
EPPK1	83481	hgsc.bcm.edu	37	8	144940706	144940706	+	Missense_Mutation	SNP	C	C	T	rs112377501	byfrequency	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	EPPK1-25	NM_031308	exon1	c.G6716A	p.R2239H	TCCTGGCGGCCGG	.	121.0	8.0	6.0	0.0	C|0.993;T|0.007	Atlas-SNP
SVEP1	79987	hgsc.bcm.edu	37	9	113173641	113173641	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	SVEP1-75	NM_153366	exon37	c.T6350A	p.V2117E	TTCAGTACAAAGC	.	101.0	34.0	66.0	0.0	.	Atlas-SNP
ALAD	210	hgsc.bcm.edu	37	9	116154411	116154411	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	ALAD-90	NM_000031	exon3	c.C152T	p.P51L	ACTCCTGGGAGGC	.	94.0	12.0	82.0	0.0	.	Atlas-SNP
