Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Algorithm
DNAJC12	56521	hgsc.bcm.edu	37	10	69571291	69571291	+	Silent	SNP	T	T	G	novel		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	DNAJC12-658	NM_201262	exon3	c.A288C	p.S96S	CTTCACTGAGTCA	.	149.0	49.0	170.0	0.0	.	Atlas-SNP
TDRD1	56165	hgsc.bcm.edu	37	10	115982440	115982440	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	TDRD1-90	NM_198795	exon21	c.C2985T	p.D995D	TGGAGACGCATGC	.	47.0	6.0	71.0	0.0	.	Atlas-SNP
CTBP2	1488	hgsc.bcm.edu	37	10	126715159	126715160	+	In_Frame_Ins	INS	-	-	GCCGCAGGCTGGGGCTGCAGG	novel		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	CTBP2-90	NM_022802	exon1	c.1170_1171insCCTGCAGCCCCAGCCTGCGGC	p.A390delinsALQPQPAA	.	.	61.0	10.0	52.0	0.0	.	Pindel
GTSF1	121355	hgsc.bcm.edu	37	12	54857074	54857074	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	GTSF1-90	NM_144594	exon4	c.C125A	p.P42H	ACATCAGGATGAT	.	165.0	86.0	103.0	0.0	.	Atlas-SNP
FAM109A	144717	hgsc.bcm.edu	37	12	111800827	111800835	+	In_Frame_Del	DEL	GCCACCCCC	GCCACCCCC	-	rs139032867		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	GCCACCCCC	GCCACCCCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	FAM109A-90	NM_001177996	exon4	c.437_445del	p.146_149del	.	.	34.0	16.0	8.0	0.0	GCCACCCCC|0.650;-|0.350	Atlas-Indel
KRTAP4-5	85289	hgsc.bcm.edu	37	17	39305769	39305769	+	Missense_Mutation	SNP	G	G	C	rs151111061		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	KRTAP4-5-90	NM_033188	exon1	c.C251G	p.T84S	CAGCAGGTGGTCT	.	78.0	26.0	83.0	0.0	.	Atlas-SNP
KRTAP4-5	85289	hgsc.bcm.edu	37	17	39305774	39305774	+	Missense_Mutation	SNP	C	C	G	rs137947981		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	KRTAP4-5-90	NM_033188	exon1	c.G246C	p.Q82H	GGTGGTCTGGCAG	.	79.0	24.0	77.0	0.0	.	Atlas-SNP
KRTAP4-5	85289	hgsc.bcm.edu	37	17	39305800	39305800	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	KRTAP4-5-90	NM_033188	exon1	c.A220T	p.S74C	AGCAGCTGGATTC	.	87.0	15.0	63.0	0.0	.	Atlas-SNP
B3GNTL1	146712	hgsc.bcm.edu	37	17	81009622	81009622	+	Silent	SNP	C	C	T	rs59686903	byfrequency	TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	B3GNTL1-92	NM_001009905	exon1	c.G51A	p.Q17Q	GTGGGCCTGCATG	.	5.0	5.0	8.0	0.0	C|0.880;T|0.120	Atlas-SNP
B3GNTL1	146712	hgsc.bcm.edu	37	17	81009636	81009636	+	Missense_Mutation	SNP	T	T	G	rs57923322	byfrequency	TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	B3GNTL1-92	NM_001009905	exon1	c.A37C	p.S13R	CCTGGCTCTCCTC	.	5.0	5.0	8.0	0.0	T|0.786;G|0.214	Atlas-SNP
NWD1	284434	hgsc.bcm.edu	37	19	16861150	16861150	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	NWD1-7	NM_001007525	exon6	c.T1697A	p.L566H	ACCAACTCTGCAC	.	82.0	34.0	63.0	0.0	.	Atlas-SNP
TBCB	1155	hgsc.bcm.edu	37	19	36611666	36611666	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	TBCB-90	NM_001281	exon3	c.G313A	p.E105K	CGGGTGGAGAAGT	.	173.0	67.0	106.0	0.0	.	Atlas-SNP
NUMBL	9253	hgsc.bcm.edu	37	19	41173886	41173886	+	Silent	SNP	C	C	T	rs62640392		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	NUMBL-637	NM_004756	exon10	c.G1317A	p.Q439Q	CTGCTGCTGCTGC	.	99.0	12.0	74.0	0.0	C|0.984;T|0.016	Atlas-SNP
NUMBL	9253	hgsc.bcm.edu	37	19	41173898	41173898	+	Silent	SNP	T	T	C	rs79747129		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	NUMBL-637	NM_004756	exon10	c.A1305G	p.Q435Q	CTGCTGTTGCTGT	.	58.0	23.0	6.0	0.0	.	Atlas-SNP
NTN5	126147	hgsc.bcm.edu	37	19	49164952	49164952	+	Silent	SNP	A	A	G	rs281392	byfrequency	TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	NTN5-136	NM_145807	exon7	c.T1452C	p.S484S	CCTGGGACTGGGT	.	12.0	10.0	9.0	0.0	A|0.464;G|0.536	Atlas-SNP
SLC4A11	83959	hgsc.bcm.edu	37	20	3210295	3210318	+	In_Frame_Del	DEL	GCTGGCGTTGAGGGCAGTGTGGAG	GCTGGCGTTGAGGGCAGTGTGGAG	-	novel		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	GCTGGCGTTGAGGGCAGTGTGGAG	GCTGGCGTTGAGGGCAGTGTGGAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	SLC4A11-91	NM_001174089	exon14	c.1595_1618del	p.532_540del	.	.	148.0	45.0	74.0	0.0	.	Atlas-Indel
SON	6651	hgsc.bcm.edu	37	21	34948684	34948684	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	SON-97	NM_138927	exon12	c.G7235A	p.G2412E	GAAATGGAGCCCT	.	67.0	7.0	33.0	0.0	.	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	37	3	41266136	41266136	+	Missense_Mutation	SNP	T	T	C	rs121913407	bycluster	TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	CTNNB1,NS,carcinoma,0	CTNNB1-24361	NM_001098210	exon3	c.T133C	p.S45P	GCTCCTTCTCTGA	.	137.0	45.0	160.0	0.0	.	Atlas-SNP
FBXW12	285231	hgsc.bcm.edu	37	3	48420011	48420011	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	FBXW12-226	NM_207102	exon6	c.C610T	p.L204L	CCATTCCTGATGG	.	83.0	29.0	97.0	0.0	.	Atlas-SNP
CRIPAK	285464	hgsc.bcm.edu	37	4	1388726	1388726	+	Missense_Mutation	SNP	T	T	C	rs199689156	byfrequency	TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	CRIPAK-90	NM_175918	exon1	c.T427C	p.C143R	TGCCCATGCGGAG	.	116.0	7.0	20.0	0.0	T|0.980;C|0.020	Atlas-SNP
PCDHA9	9752	hgsc.bcm.edu	37	5	140230462	140230462	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	PCDHA9-138	NM_014005	exon1	c.T2382G	p.D794E	CTCAGATTCAACT	.	333.0	153.0	182.0	0.0	.	Atlas-SNP
TAAR5	9038	hgsc.bcm.edu	37	6	132910157	132910157	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	TAAR5-91	NM_003967	exon1	c.T669C	p.F223F	AACCACAAAGATC	.	75.0	27.0	99.0	0.0	.	Atlas-SNP
ADGB	79747	hgsc.bcm.edu	37	6	147054299	147054299	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	.	NM_024694	exon21	c.T2564C	p.I855T	TTCAAATAACAAA	.	35.0	12.0	52.0	0.0	.	Atlas-SNP
CPNE3	8895	hgsc.bcm.edu	37	8	87560662	87560662	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	CPNE3-117	NM_003909	exon12	c.C1013T	p.A338V	ATGATGCGTGAGT	.	117.0	28.0	119.0	0.0	.	Atlas-SNP
ESRP1	54845	hgsc.bcm.edu	37	8	95690599	95690599	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	ESRP1-94	NM_001122827	exon13	c.G1808T	p.S603I	ATCCCAGGTAAGG	.	62.0	4.0	57.0	0.0	.	Atlas-SNP
PBX3	5090	hgsc.bcm.edu	37	9	128724400	128724400	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	PBX3-91	NM_006195	exon7	c.C1029T	p.N343N	TTTTAACCTCCCA	.	63.0	11.0	62.0	0.0	.	Atlas-SNP
