Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Algorithm
LIPN	643418	hgsc.bcm.edu	37	10	90528645	90528645	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	.	NM_001102469	exon5	c.T632C	p.I211T	CGGGCATTTTTAC	.	68.0	33.0	68.0	0.0	.	Atlas-SNP
IFIT1B	439996	hgsc.bcm.edu	37	10	91143636	91143636	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	IFIT1B-90	NM_001010987	exon2	c.A566T	p.D189V	GCCTGGATAAATT	.	79.0	12.0	80.0	0.0	.	Atlas-SNP
CCDC147	159686	hgsc.bcm.edu	37	10	106159171	106159171	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	CCDC147-71	NM_001008723	exon12	c.A1728T	p.E576D	TATTGAAAAGCAA	.	89.0	15.0	101.0	0.0	.	Atlas-SNP
TCF7L2	6934	hgsc.bcm.edu	37	10	114711350	114711350	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	TCF7L2-586	NM_001146284	exon3	c.C365A	p.S122X	CGCTCTCGCCCAC	.	114.0	27.0	114.0	0.0	.	Atlas-SNP
TH	7054	hgsc.bcm.edu	37	11	2189798	2189798	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	TH-90	NM_000360	exon3	c.G410A	p.R137H	CCTCGGCGCACCT	.	95.0	12.0	22.0	0.0	.	Atlas-SNP
OR56A3	390083	hgsc.bcm.edu	37	11	5969056	5969056	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	OR56A3-68	NM_001003443	exon1	c.T480C	p.T160T	TATGACTCTGCCC	.	165.0	42.0	151.0	0.0	.	Atlas-SNP
OR4C16	219428	hgsc.bcm.edu	37	11	55339779	55339779	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	OR4C16-70	NM_001004701	exon1	c.T176A	p.F59Y	TGTTCTTCTTCCT	.	217.0	12.0	159.0	0.0	.	Atlas-SNP
OR4C6	219432	hgsc.bcm.edu	37	11	55432669	55432669	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	OR4C6-70	NM_001004704	exon1	c.A27C	p.E9D	GACTGAATTCATT	.	33.0	7.0	28.0	0.0	.	Atlas-SNP
TMEM151A	256472	hgsc.bcm.edu	37	11	66062588	66062588	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	TMEM151A-90	NM_153266	exon2	c.G871A	p.V291M	TGGCTCGTGTCGG	.	65.0	32.0	7.0	0.0	.	Atlas-SNP
PPFIA1	8500	hgsc.bcm.edu	37	11	70228237	70228237	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	PPFIA1-228	NM_003626	exon27	c.G3594A	p.R1198R	AGTCAGGACTTAC	.	215.0	19.0	76.0	0.0	.	Atlas-SNP
SHANK2	22941	hgsc.bcm.edu	37	11	70333395	70333395	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	SHANK2-94	NM_133266	exon10	c.C1239T	p.Y413Y	GGGGACGTAGACG	.	335.0	82.0	167.0	0.0	.	Atlas-SNP
WNT11	7481	hgsc.bcm.edu	37	11	75898196	75898196	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	WNT11-562	NM_004626	exon5	c.C978T	p.V326V	CCGCTCGACCACG	.	163.0	14.0	80.0	0.0	.	Atlas-SNP
FGF23	8074	hgsc.bcm.edu	37	12	4488634	4488634	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	FGF23-660	NM_020638	exon1	c.C115G	p.L39V	GGATCAGGCCACC	.	107.0	9.0	54.0	0.0	.	Atlas-SNP
SCNN1A	6337	hgsc.bcm.edu	37	12	6457898	6457898	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	SCNN1A-90	NM_001159576	exon11	c.G1801A	p.V601I	CCGTGACAGAGGG	.	175.0	24.0	178.0	0.0	.	Atlas-SNP
PTPN6	5777	hgsc.bcm.edu	37	12	7060782	7060782	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	PTPN6-703	NM_002831	exon2	c.C19T	p.R7X	TTTCACCGAGACC	.	115.0	9.0	113.0	0.0	.	Atlas-SNP
HDAC7	51564	hgsc.bcm.edu	37	12	48189737	48189737	+	Silent	SNP	T	T	G	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	HDAC7-289	NM_015401	exon9	c.A858C	p.T286T	GGACACTGTCGGC	.	122.0	20.0	80.0	0.0	.	Atlas-SNP
KIF5A	3798	hgsc.bcm.edu	37	12	57976934	57976934	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	KIF5A-517	NM_004984	exon28	c.C3071G	p.P1024R	TTTTCCCTCTCCA	.	130.0	31.0	90.0	0.0	.	Atlas-SNP
SYCP3	50511	hgsc.bcm.edu	37	12	102122734	102122734	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	SYCP3-90	NM_001177948	exon9	c.C682T	p.R228W	ACTTCCGAACACT	.	90.0	20.0	71.0	0.0	.	Atlas-SNP
LHX5	64211	hgsc.bcm.edu	37	12	113906071	113906071	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	LHX5-90	NM_022363	exon3	c.A536G	p.K179R	CGCCGCTTGGTGC	.	268.0	14.0	173.0	0.0	.	Atlas-SNP
SRRM4	84530	hgsc.bcm.edu	37	12	119583269	119583269	+	Silent	SNP	C	C	T	rs201517536		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	SRRM4-2	NM_194286	exon9	c.C855T	p.Y285Y	GGAGTACGACTCA	.	103.0	40.0	102.0	0.0	C|1.000;T|0.000	Atlas-SNP
GCN1L1	10985	hgsc.bcm.edu	37	12	120589045	120589045	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	GCN1L1-94	NM_006836	exon34	c.G4213A	p.V1405M	CCTTCACCAGGCC	.	101.0	15.0	105.0	0.0	.	Atlas-SNP
CLIP1	6249	hgsc.bcm.edu	37	12	122812908	122812908	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	CLIP1-155	NM_198240	exon14	c.G2795C	p.S932T	TCAATACTTTTTT	.	71.0	14.0	50.0	0.0	.	Atlas-SNP
ALKBH1	8846	hgsc.bcm.edu	37	14	78161095	78161095	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	ALKBH1-228	NM_006020	exon3	c.C441A	p.S147R	CTCTTTGCTCTGT	.	77.0	6.0	72.0	0.0	.	Atlas-SNP
SNW1	22938	hgsc.bcm.edu	37	14	78205323	78205323	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	SNW1-187	NM_012245	exon4	c.G412T	p.E138X	TAGCTTCTTCATC	.	143.0	13.0	134.0	0.0	.	Atlas-SNP
DYNC1H1	1778	hgsc.bcm.edu	37	14	102484794	102484794	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	DYNC1H1-98	NM_001376	exon41	c.G8184A	p.L2728L	GTTCCTGCGCCAC	.	79.0	7.0	79.0	0.0	.	Atlas-SNP
HOMER2	9455	hgsc.bcm.edu	37	15	83527785	83527785	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	HOMER2-67	NM_004839	exon5	c.C490G	p.Q164E	ACCTCTGCGTCAA	.	123.0	42.0	107.0	0.0	.	Atlas-SNP
SEC11A	23478	hgsc.bcm.edu	37	15	85230912	85230912	+	Silent	SNP	A	A	G	rs71395463	alternate_allele	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	SEC11A-23	NM_001271918	exon4	c.T177C	p.F59F	TATCCTAAAAACA	.	113.0	7.0	92.0	0.0	A|0.500;T|0.500	Atlas-SNP
C16orf89	146556	hgsc.bcm.edu	37	16	5097933	5097933	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	C16orf89-92	NM_001098514	exon7	c.C901A	p.Q301K	GATATTGAATAGC	.	39.0	18.0	29.0	0.0	.	Atlas-SNP
VPS35	55737	hgsc.bcm.edu	37	16	46705646	46705646	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	VPS35-90	NM_018206	exon12	c.C1495T	p.R499C	CAGAGCGCAGCAG	.	154.0	29.0	147.0	0.0	.	Atlas-SNP
ABCC11	85320	hgsc.bcm.edu	37	16	48261750	48261750	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	ABCC11-95	NM_145186	exon4	c.C362G	p.S121X	TGGACTGACAGTG	.	111.0	20.0	151.0	0.0	.	Atlas-SNP
CDH5	1003	hgsc.bcm.edu	37	16	66420935	66420935	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	CDH5-525	NM_001795	exon3	c.A434G	p.N145S	ACGTGAACGACAA	.	345.0	18.0	272.0	0.0	.	Atlas-SNP
ASIC2	40	hgsc.bcm.edu	37	17	31618452	31618452	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	.	NM_183377	exon1	c.C682G	p.L228V	CGCAGAGCTCGCC	.	116.0	17.0	85.0	0.0	.	Atlas-SNP
AATF	26574	hgsc.bcm.edu	37	17	35310421	35310421	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	AATF-90	NM_012138	exon3	c.G519C	p.E173D	GGAGGAGGAAGAC	.	306.0	116.0	244.0	0.0	.	Atlas-SNP
C17orf78	284099	hgsc.bcm.edu	37	17	35734873	35734873	+	Missense_Mutation	SNP	G	G	A	rs184660990		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	.	NM_173625	exon2	c.G115A	p.V39M	AAAGACGTGAGAA	.	323.0	49.0	262.0	0.0	G|0.999;A|0.001	Atlas-SNP
KLHL10	317719	hgsc.bcm.edu	37	17	39998282	39998282	+	Silent	SNP	A	A	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	KLHL10-227	NM_152467	exon2	c.A402T	p.S134S	CAAGTCAGAGCTG	.	301.0	20.0	229.0	0.0	.	Atlas-SNP
TBX21	30009	hgsc.bcm.edu	37	17	45821703	45821703	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	TBX21-90	NM_013351	exon4	c.C911G	p.A304G	TGACTGCCTACCA	.	211.0	26.0	177.0	0.0	.	Atlas-SNP
TOM1L1	10040	hgsc.bcm.edu	37	17	52993172	52993172	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	TOM1L1-91	NM_005486	exon7	c.G669C	p.L223F	CATATTGATGGAG	.	161.0	32.0	156.0	0.0	.	Atlas-SNP
PITPNC1	26207	hgsc.bcm.edu	37	17	65683182	65683182	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	PITPNC1-226	NM_181671	exon9	c.A683G	p.D228G	TTTCAGATATGAC	.	138.0	27.0	96.0	0.0	.	Atlas-SNP
RBFOX3	146713	hgsc.bcm.edu	37	17	77093792	77093792	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	.	NM_001082575	exon10	c.G604A	p.D202N	CAGGCCCGTAGAC	.	350.0	62.0	221.0	0.0	.	Atlas-SNP
CCDC178	374864	hgsc.bcm.edu	37	18	30926226	30926226	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	.	NM_198995	exon9	c.G607C	p.D203H	AAGAGTCAATTTT	.	96.0	9.0	95.0	0.0	.	Atlas-SNP
LOXHD1	125336	hgsc.bcm.edu	37	18	44118286	44118286	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	.	NM_001145472	exon8	c.A595G	p.I199V	GGGTGATCTCGTA	.	134.0	27.0	118.0	0.0	.	Atlas-SNP
ADAT3	113179	hgsc.bcm.edu	37	19	1912251	1912251	+	Missense_Mutation	SNP	A	A	G	rs150715312	byfrequency	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	ADAT3-154	NM_138422	exon2	c.A205G	p.K69E	CTGGACAAGCGCC	.	64.0	18.0	10.0	0.0	A|0.993;G|0.007	Atlas-SNP
CD209	30835	hgsc.bcm.edu	37	19	7808071	7808071	+	Missense_Mutation	SNP	C	C	T	rs200282091		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	CD209-91	NM_001144894	exon5	c.G937A	p.A313T	ATTCCGCGCAGTC	.	147.0	44.0	130.0	0.0	C|0.999;T|0.000	Atlas-SNP
HNRNPM	4670	hgsc.bcm.edu	37	19	8550870	8550870	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	HNRNPM-68	NM_005968	exon14	c.C1558T	p.P520S	ATGGGCCCTGCCA	.	140.0	23.0	27.0	0.0	.	Atlas-SNP
HNRNPM	4670	hgsc.bcm.edu	37	19	8550874	8550874	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	HNRNPM-68	NM_005968	exon14	c.C1562G	p.A521G	GCCCTGCCATCGA	.	150.0	28.0	27.0	0.0	.	Atlas-SNP
HNRNPM	4670	hgsc.bcm.edu	37	19	8550876	8550876	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	HNRNPM-68	NM_005968	exon14	c.A1564G	p.I522V	CCTGCCATCGAGC	.	153.0	24.0	28.0	0.0	.	Atlas-SNP
HNRNPM	4670	hgsc.bcm.edu	37	19	8550878	8550878	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	HNRNPM-68	NM_005968	exon14	c.C1566G	p.I522M	TGCCATCGAGCGC	.	152.0	40.0	28.0	0.0	.	Atlas-SNP
PRR19	284338	hgsc.bcm.edu	37	19	42814036	42814036	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	PRR19-68	NM_199285	exon2	c.C300T	p.P100P	CAGCCCCACACTC	.	38.0	5.0	52.0	0.0	.	Atlas-SNP
FAM83E	54854	hgsc.bcm.edu	37	19	49104471	49104471	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	FAM83E-91	NM_017708	exon5	c.A1332G	p.P444P	TCGGGCTGGGGAC	.	71.0	6.0	54.0	0.0	.	Atlas-SNP
NLRP4	147945	hgsc.bcm.edu	37	19	56369429	56369429	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	NLRP4-216	NM_134444	exon3	c.G670T	p.E224X	CAACCGGAGAGAC	.	102.0	14.0	111.0	0.0	.	Atlas-SNP
PEG3	5178	hgsc.bcm.edu	37	19	57327088	57327088	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	PEG3-164	NM_001146186	exon7	c.G2722T	p.V908F	CAGGAACACTTTT	.	69.0	5.0	48.0	0.0	.	Atlas-SNP
C1orf158	93190	hgsc.bcm.edu	37	1	12815709	12815709	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	C1orf158-92	NM_152290	exon2	c.C171A	p.F57L	CCCCTTCCCAGAC	.	354.0	162.0	340.0	1.0	.	Atlas-SNP
RPRD2	23248	hgsc.bcm.edu	37	1	150443166	150443166	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	RPRD2-23	NM_015203	exon11	c.G1742A	p.S581N	CCTCCAGTGCCCA	.	80.0	40.0	66.0	0.0	.	Atlas-SNP
KCNN3	3782	hgsc.bcm.edu	37	1	154842250	154842250	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	KCNN3-91	NM_002249	exon1	c.C191A	p.P64Q	AGCTGCGGAGGCT	.	60.0	11.0	14.0	0.0	.	Atlas-SNP
HAPLN2	60484	hgsc.bcm.edu	37	1	156593357	156593357	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	HAPLN2-90	NM_021817	exon3	c.A75G	p.Q25Q	AGCCCAAGGAGAC	.	53.0	6.0	67.0	0.0	.	Atlas-SNP
GPA33	10223	hgsc.bcm.edu	37	1	167042639	167042639	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	GPA33-90	NM_005814	exon2	c.C181A	p.L61I	GGAGGAGCTTATC	.	130.0	29.0	145.0	0.0	.	Atlas-SNP
TNN	63923	hgsc.bcm.edu	37	1	175046673	175046673	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	TNN-138	NM_022093	exon2	c.T119A	p.V40D	AACAGGTCACTGT	.	144.0	57.0	145.0	0.0	.	Atlas-SNP
ZNF281	23528	hgsc.bcm.edu	37	1	200378016	200378016	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	ZNF281-154	NM_012482	exon2	c.C818T	p.S273F	TGATAGGAGCTTC	.	179.0	35.0	159.0	0.0	.	Atlas-SNP
CENPF	1063	hgsc.bcm.edu	37	1	214816433	214816433	+	Silent	SNP	C	C	T	rs200241672	alternate_allele	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	CENPF-567	NM_016343	exon12	c.C4752T	p.L1584L	AGAGCTCGAGCAG	.	102.0	47.0	102.0	0.0	C|0.999;G|0.001	Atlas-SNP
PCNXL2	80003	hgsc.bcm.edu	37	1	233388165	233388165	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	PCNXL2-91	NM_014801	exon7	c.G2063C	p.G688A	TCAGGCCCACTGA	.	237.0	15.0	228.0	0.0	.	Atlas-SNP
HEATR1	55127	hgsc.bcm.edu	37	1	236722384	236722384	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	HEATR1-93	NM_018072	exon35	c.G4822A	p.V1608M	TGCCCACCAGCCC	.	59.0	23.0	27.0	0.0	.	Atlas-SNP
C20orf112	140688	hgsc.bcm.edu	37	20	31115669	31115669	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	C20orf112-514	NM_001256798	exon2	c.C369T	p.V123V	CACAGCGACCCGC	.	104.0	27.0	83.0	0.0	.	Atlas-SNP
WFDC8	90199	hgsc.bcm.edu	37	20	44184408	44184408	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	WFDC8-90	NM_130896	exon4	c.G377A	p.R126K	CAGCCCCTGTATT	.	94.0	11.0	77.0	0.0	.	Atlas-SNP
CHEK2	11200	hgsc.bcm.edu	37	22	29121006	29121006	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	CHEK2-1515	NM_145862	exon4	c.A551T	p.N184I	TTGTTATTCAAAG	.	222.0	15.0	167.0	0.0	.	Atlas-SNP
C22orf31	25770	hgsc.bcm.edu	37	22	29454817	29454817	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	C22orf31-90	NM_015370	exon3	c.G786C	p.Q262H	GTCCCTCTGAGCA	.	112.0	17.0	87.0	0.0	.	Atlas-SNP
CSF2RB	1439	hgsc.bcm.edu	37	22	37333549	37333549	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	CSF2RB-93	NM_000395	exon14	c.C1699G	p.P567A	CAGCCCCCCAGCC	.	65.0	7.0	47.0	0.0	.	Atlas-SNP
ENTHD1	150350	hgsc.bcm.edu	37	22	40140106	40140106	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	ENTHD1-93	NM_152512	exon7	c.C1402T	p.L468L	GATGCAGCTTGGC	.	155.0	25.0	129.0	0.0	.	Atlas-SNP
CPSF3	51692	hgsc.bcm.edu	37	2	9580674	9580674	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	CPSF3-153	NM_016207	exon8	c.C815T	p.S272L	ATGCATCATCTTT	.	142.0	45.0	145.0	0.0	.	Atlas-SNP
CCDC121	79635	hgsc.bcm.edu	37	2	27850291	27850291	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	CCDC121-68	NM_001142683	exon2	c.G862A	p.E288K	TCTCCTCCTGTAA	.	48.0	13.0	49.0	0.0	.	Atlas-SNP
FAM179A	165186	hgsc.bcm.edu	37	2	29274646	29274646	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	FAM179A-26	NM_199280	exon20	c.G2747A	p.R916Q	ACCCCCGGAAGCC	.	170.0	16.0	158.0	0.0	.	Atlas-SNP
PLEKHH2	130271	hgsc.bcm.edu	37	2	43984346	43984346	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	PLEKHH2-92	NM_172069	exon26	c.T3884A	p.V1295D	AGCAAGTCATAGA	.	108.0	6.0	102.0	0.0	.	Atlas-SNP
SRBD1	55133	hgsc.bcm.edu	37	2	45801796	45801796	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	SRBD1-90	NM_018079	exon8	c.A1139G	p.D380G	TCTTTGTCTTTAG	.	89.0	21.0	90.0	0.0	.	Atlas-SNP
KRCC1	51315	hgsc.bcm.edu	37	2	88327571	88327571	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	KRCC1-69	NM_016618	exon4	c.C512G	p.S171X	TCCTCTGATTTTT	.	52.0	20.0	71.0	0.0	.	Atlas-SNP
CNNM4	26504	hgsc.bcm.edu	37	2	97475185	97475185	+	Silent	SNP	C	C	T	rs187426899		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	CNNM4-154	NM_020184	exon7	c.C2259T	p.D753D	GGTGGACGAGACC	.	203.0	86.0	178.0	0.0	C|0.999;T|0.000	Atlas-SNP
PDCL3	79031	hgsc.bcm.edu	37	2	101192892	101192892	+	Silent	SNP	C	C	T	rs145184150	byfrequency	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	PDCL3-90	NM_024065	exon6	c.C654T	p.D218D	TGAAGACGTGTTG	.	84.0	14.0	92.0	0.0	C|0.999;T|0.001	Atlas-SNP
LY75-CD302	100526664	hgsc.bcm.edu	37	2	160676404	160676404	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	.	NM_001198760	exon29	c.C3986A	p.T1329N	AGTGGGGTCTTAT	.	54.0	19.0	58.0	0.0	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	37	2	179445121	179445121	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	TTN-636	NM_001267550	exon317	c.G66985T	p.A22329S	TTCCTGCATCATA	.	93.0	34.0	116.0	0.0	.	Atlas-SNP
SPEG	10290	hgsc.bcm.edu	37	2	220354432	220354432	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	SPEG-383	NM_005876	exon36	c.A8692G	p.T2898A	TCCTCTACTCCTG	.	65.0	39.0	55.0	0.0	.	Atlas-SNP
MLH1	4292	hgsc.bcm.edu	37	3	37055929	37055929	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	MLH1-2559	NM_000249	exon9	c.G684C	p.L228L	AGAACTGATAGAA	.	115.0	9.0	124.0	0.0	.	Atlas-SNP
CCDC39	339829	hgsc.bcm.edu	37	3	180372596	180372596	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	CCDC39-72	NM_181426	exon7	c.C884T	p.T295M	TATGCCGTTCTAC	.	95.0	20.0	74.0	0.0	.	Atlas-SNP
MCF2L2	23101	hgsc.bcm.edu	37	3	182941972	182941972	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	MCF2L2-293	NM_015078	exon19	c.G2122C	p.D708H	GAAGATCTTCTTT	.	17.0	8.0	16.0	0.0	.	Atlas-SNP
ECE2	9718	hgsc.bcm.edu	37	3	183975278	183975278	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	ECE2-94	NM_014693	exon2	c.C214G	p.L72V	AGTGCCCTGAGCT	.	98.0	9.0	93.0	0.0	.	Atlas-SNP
RTP1	132112	hgsc.bcm.edu	37	3	186917619	186917619	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	RTP1-155	NM_153708	exon2	c.C553T	p.R185W	AACCGGCGGCACC	.	215.0	26.0	54.0	0.0	.	Atlas-SNP
TMEM44	93109	hgsc.bcm.edu	37	3	194336340	194336340	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	TMEM44-90	NM_138399	exon7	c.A870G	p.Q290Q	AAGGGCTTGGGTG	.	129.0	10.0	108.0	0.0	.	Atlas-SNP
GRK4	2868	hgsc.bcm.edu	37	4	2990469	2990469	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	GRK4-507	NM_182982	exon3	c.G164C	p.S55T	ATAGCAGTCTTTG	.	113.0	9.0	80.0	0.0	.	Atlas-SNP
BLOC1S4	55330	hgsc.bcm.edu	37	4	6718286	6718286	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	.	NM_018366	exon1	c.G350A	p.G117D	GCGAGGGCGTGCC	.	85.0	36.0	32.0	0.0	.	Atlas-SNP
CORIN	10699	hgsc.bcm.edu	37	4	47788784	47788784	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	CORIN-91	NM_006587	exon3	c.A367T	p.T123S	CATCCGTAGTCCA	.	215.0	32.0	147.0	0.0	.	Atlas-SNP
TEC	7006	hgsc.bcm.edu	37	4	48172291	48172291	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	TEC-1004	NM_003215	exon5	c.G428T	p.C143F	TTTTCACATCCGG	.	194.0	42.0	185.0	0.0	.	Atlas-SNP
FRAS1	80144	hgsc.bcm.edu	37	4	79440544	79440544	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	FRAS1-68	NM_025074	exon67	c.C10449G	p.I3483M	CTACATCTATGTG	.	104.0	42.0	93.0	0.0	.	Atlas-SNP
GK2	2712	hgsc.bcm.edu	37	4	80327936	80327936	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	GK2-94	NM_033214	exon1	c.C1419T	p.S473S	TTCAAGGCTCCAA	.	262.0	27.0	170.0	0.0	.	Atlas-SNP
MMRN1	22915	hgsc.bcm.edu	37	4	90872784	90872784	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	MMRN1-94	NM_007351	exon7	c.G3147A	p.P1049P	GCATCCGTGCCAA	.	145.0	26.0	128.0	0.0	.	Atlas-SNP
C4orf21	55345	hgsc.bcm.edu	37	4	113505163	113505163	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	C4orf21-90	NM_018392	exon15	c.A4269G	p.P1423P	ATAAAGTGGTATC	.	66.0	18.0	56.0	0.0	.	Atlas-SNP
GLRB	2743	hgsc.bcm.edu	37	4	158074152	158074152	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	GLRB-92	NM_001166060	exon9	c.G1187T	p.S396I	ATATTAGCACTTT	.	81.0	13.0	118.0	0.0	.	Atlas-SNP
DDX60L	91351	hgsc.bcm.edu	37	4	169369890	169369890	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	DDX60L-69	NM_001012967	exon9	c.T1037G	p.V346G	CCAAAAACGTTTA	.	260.0	37.0	210.0	0.0	.	Atlas-SNP
ACSL1	2180	hgsc.bcm.edu	37	4	185686036	185686036	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	ACSL1-92	NM_001995	exon15	c.G1403A	p.C468Y	GTCAGGCAGCACC	.	157.0	30.0	222.0	0.0	.	Atlas-SNP
FAM173B	134145	hgsc.bcm.edu	37	5	10239180	10239180	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	FAM173B-91	NM_199133	exon2	c.T305A	p.I102N	CTCACAATGCGTC	.	38.0	17.0	46.0	0.0	.	Atlas-SNP
MAP3K1	4214	hgsc.bcm.edu	37	5	56155597	56155597	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	MAP3K1-956	NM_005921	exon3	c.C689T	p.A230V	TAGCAGCTGAGTC	.	128.0	15.0	222.0	0.0	.	Atlas-SNP
RASGRF2	5924	hgsc.bcm.edu	37	5	80409739	80409739	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	RASGRF2-725	NM_006909	exon15	c.G2470T	p.A824S	CAAAAAGGTATTA	.	42.0	14.0	55.0	0.0	.	Atlas-SNP
AFF4	27125	hgsc.bcm.edu	37	5	132232343	132232343	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	AFF4-229	NM_014423	exon11	c.C1979A	p.P660H	GAAGGAGGAAGGC	.	80.0	4.0	120.0	0.0	.	Atlas-SNP
HARS2	23438	hgsc.bcm.edu	37	5	140075331	140075331	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	HARS2-90	NM_012208	exon6	c.C534T	p.D178D	TTTTGACATTGCT	.	148.0	22.0	190.0	0.0	.	Atlas-SNP
PCDHGB7	56099	hgsc.bcm.edu	37	5	140797965	140797965	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	PCDHGB7-29	NM_032101	exon1	c.T539C	p.L180S	TCTCATTGGTGGA	.	122.0	12.0	122.0	0.0	.	Atlas-SNP
TXNDC5	81567	hgsc.bcm.edu	37	6	7904880	7904880	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	TXNDC5-90	NM_030810	exon2	c.G340A	p.V114I	CATAGACTTTGGC	.	76.0	13.0	86.0	0.0	.	Atlas-SNP
TRIM39-RPP21	202658	hgsc.bcm.edu	37	6	30297383	30297383	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	.	NM_001199119	exon1	c.G289A	p.V97I	CAGGCCGTCAAGC	.	155.0	13.0	139.0	0.0	.	Atlas-SNP
SKIV2L	6499	hgsc.bcm.edu	37	6	31927812	31927812	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	SKIV2L-290	NM_006929	exon3	c.C152T	p.A51V	CTTGTGCCCCAGA	.	75.0	11.0	81.0	0.0	.	Atlas-SNP
SKIV2L	6499	hgsc.bcm.edu	37	6	31927815	31927815	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	SKIV2L-290	NM_006929	exon3	c.C155A	p.P52Q	GTGCCCCAGATCT	.	73.0	10.0	81.0	0.0	.	Atlas-SNP
SKIV2L	6499	hgsc.bcm.edu	37	6	31928995	31928995	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	SKIV2L-290	NM_006929	exon8	c.A621G	p.G207G	TCCTGGACTACTA	.	147.0	15.0	133.0	0.0	.	Atlas-SNP
HLA-DOB	3112	hgsc.bcm.edu	37	6	32782314	32782314	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	HLA-DOB-91	NM_002120	exon3	c.C426T	p.H142H	AGAGCAGTGCAGC	.	137.0	18.0	134.0	0.0	.	Atlas-SNP
NFYA	4800	hgsc.bcm.edu	37	6	41057410	41057410	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	NFYA-226	NM_002505	exon5	c.C402G	p.I134M	CATCATCCAGCAG	.	233.0	33.0	178.0	0.0	.	Atlas-SNP
PKHD1	5314	hgsc.bcm.edu	37	6	51890570	51890570	+	Silent	SNP	G	G	A	rs147584295	byfrequency	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	PKHD1-603	NM_170724	exon32	c.C4038T	p.N1346N	GCTCACGTTGCCC	.	134.0	61.0	148.0	0.0	G|0.999;A|0.001	Atlas-SNP
LAMA2	3908	hgsc.bcm.edu	37	6	129465098	129465098	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	LAMA2-162	NM_001079823	exon5	c.A692C	p.E231A	CTCCAGAACTGCT	.	71.0	11.0	59.0	0.0	.	Atlas-SNP
MED23	9439	hgsc.bcm.edu	37	6	131914268	131914268	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	MED23-24	NM_015979	exon25	c.G3294A	p.W1098X	GAATCTCCAGTCA	.	188.0	86.0	209.0	0.0	.	Atlas-SNP
SERINC1	57515	hgsc.bcm.edu	37	6	122772896	122772925	+	Frame_Shift_Del	DEL	ATTCCTACAAAAAAAAAAAAAAAAAAATAT	ATTCCTACAAAAAAAAAAAAAAAAAAATAT	-	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	ATTCCTACAAAAAAAAAAAAAAAAAAATAT	ATTCCTACAAAAAAAAAAAAAAAAAAATAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	SERINC1-91	NM_020755	exon7	c.760_764del	p.254_255del	.	.	78.0	12.0	76.0	0.0	.	Atlas-Indel
RADIL	55698	hgsc.bcm.edu	37	7	4876135	4876135	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	RADIL-994	NM_018059	exon3	c.C637T	p.R213C	CTGTGCGGCGCAA	.	49.0	7.0	8.0	0.0	.	Atlas-SNP
RFC2	5982	hgsc.bcm.edu	37	7	73649931	73649931	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	RFC2-229	NM_181471	exon10	c.C885T	p.I295I	GCCAATGATATCT	.	168.0	55.0	114.0	0.0	.	Atlas-SNP
MOSPD3	64598	hgsc.bcm.edu	37	7	100212602	100212602	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	MOSPD3-92	NM_001040098	exon5	c.T624A	p.P208P	GCTGCCTCAAGTC	.	100.0	20.0	75.0	0.0	.	Atlas-SNP
CPED1	79974	hgsc.bcm.edu	37	7	120768496	120768496	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	.	NM_024913	exon11	c.A1363T	p.M455L	TCAATTATGACTT	.	306.0	21.0	270.0	0.0	.	Atlas-SNP
MYOM2	9172	hgsc.bcm.edu	37	8	2040266	2040266	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	MYOM2-95	NM_003970	exon16	c.C1921A	p.L641M	GAGGACCTGCTGG	.	265.0	126.0	218.0	1.0	.	Atlas-SNP
COL22A1	169044	hgsc.bcm.edu	37	8	139793209	139793209	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	COL22A1-103	NM_152888	exon13	c.G1611T	p.L537L	GCCGGGCAGGCCC	.	76.0	39.0	33.0	0.0	.	Atlas-SNP
FAM83H	286077	hgsc.bcm.edu	37	8	144808866	144808866	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	FAM83H-92	NM_198488	exon5	c.G2765A	p.R922H	CTCCTGCGCTCCG	.	34.0	12.0	6.0	0.0	.	Atlas-SNP
UHRF2	115426	hgsc.bcm.edu	37	9	6460639	6460639	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	UHRF2-721	NM_152896	exon4	c.G711C	p.L237F	CATTTTGAAATGG	.	85.0	11.0	67.0	0.0	.	Atlas-SNP
UHRF2	115426	hgsc.bcm.edu	37	9	6460721	6460721	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	UHRF2-721	NM_152896	exon4	c.G793C	p.D265H	TGGTTTGATGCAG	.	110.0	12.0	87.0	0.0	.	Atlas-SNP
SPATA31A6	389730	hgsc.bcm.edu	37	9	43627272	43627272	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	.	NM_001145196	exon4	c.T1415C	p.L472P	TGGGACAGGGGCT	.	95.0	20.0	106.0	0.0	.	Atlas-SNP
GADD45G	10912	hgsc.bcm.edu	37	9	92220393	92220393	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	GADD45G-514	NM_006705	exon2	c.C100T	p.Q34X	TCGGCGCAGCGTC	.	83.0	37.0	54.0	0.0	.	Atlas-SNP
DFNB31	25861	hgsc.bcm.edu	37	9	117185706	117185706	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	DFNB31-95	NM_015404	exon7	c.C1514T	p.A505V	TGCCGCGCCTTCA	.	187.0	47.0	166.0	0.0	.	Atlas-SNP
ABL1	25	hgsc.bcm.edu	37	9	133760173	133760173	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	ABL1-3810	NM_005157	exon11	c.C2496T	p.H832H	CCCCCACAAGGAA	.	171.0	51.0	168.0	0.0	.	Atlas-SNP
MAGEB4	4115	hgsc.bcm.edu	37	X	30261199	30261199	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	MAGEB4-131	NM_002367	exon1	c.G947A	p.G316E	GAGCTGGAGCCCG	.	60.0	19.0	63.0	0.0	.	Atlas-SNP
PIN4	5303	hgsc.bcm.edu	37	X	71417263	71417263	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	PIN4-130	NM_006223	exon4	c.C358G	p.Q120E	CCATTTCAAGAAG	.	442.0	86.0	350.0	0.0	.	Atlas-SNP
MAGEE1	57692	hgsc.bcm.edu	37	X	75648451	75648451	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	MAGEE1-262	NM_020932	exon1	c.C128G	p.S43X	CAGGCTCAGACGT	.	336.0	19.0	247.0	0.0	.	Atlas-SNP
