Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Algorithm
ABLIM1	3983	hgsc.bcm.edu	37	10	116225545	116225545	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	ABLIM1-153	NM_006720	exon8	c.G489A	p.T163T	CTGGCTCGTGGAC	.	137.0	55.0	176.0	0.0	.	Atlas-SNP
LDHA	3939	hgsc.bcm.edu	37	11	18428729	18428729	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	LDHA-650	NM_001135239	exon7	c.C726G	p.I242M	TGGAATCTCAGAC	.	159.0	10.0	186.0	0.0	.	Atlas-SNP
FNBP4	23360	hgsc.bcm.edu	37	11	47772525	47772525	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	FNBP4-91	NM_015308	exon6	c.G849T	p.T283T	AGAAATCGTTTTC	.	43.0	30.0	77.0	0.0	.	Atlas-SNP
CCDC88B	283234	hgsc.bcm.edu	37	11	64112617	64112617	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	CCDC88B-94	NM_032251	exon14	c.G2604T	p.E868D	GAAGGAGGCCCTC	.	33.0	4.0	13.0	0.0	.	Atlas-SNP
TAS2R50	259296	hgsc.bcm.edu	37	12	11138943	11138943	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	TAS2R50-92	NM_176890	exon1	c.C517A	p.H173N	AAAGATGTACTGT	.	135.0	15.0	99.0	0.0	.	Atlas-SNP
EEA1	8411	hgsc.bcm.edu	37	12	93251238	93251238	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	EEA1-229	NM_003566	exon4	c.A269G	p.Q90R	ACCTCTTGTCTGA	.	202.0	62.0	137.0	0.0	.	Atlas-SNP
DAAM1	23002	hgsc.bcm.edu	37	14	59835519	59835519	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	DAAM1-227	NM_001270520	exon25	c.T3149C	p.I1050T	AACGTATTACCAA	.	147.0	60.0	108.0	0.0	.	Atlas-SNP
TMEM8A	58986	hgsc.bcm.edu	37	16	426160	426160	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	TMEM8A-92	NM_021259	exon6	c.C1200T	p.L400L	GATGGTGAGGGAA	.	236.0	65.0	72.0	0.0	.	Atlas-SNP
IGSF6	10261	hgsc.bcm.edu	37	16	21652899	21652901	+	In_Frame_Del	DEL	TGT	TGT	-	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	TGT	TGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	IGSF6-68	NM_005849	exon6	c.681_683del	p.227_228del	.	.	60.0	19.0	49.0	0.0	.	Atlas-Indel
MRI1	84245	hgsc.bcm.edu	37	19	13879744	13879744	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	MRI1-91	NM_001031727	exon5	c.C831T	p.Y277Y	CTTCTACGTGGCT	.	176.0	38.0	140.0	0.0	.	Atlas-SNP
INPP5B	3633	hgsc.bcm.edu	37	1	38397696	38397696	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	INPP5B-227	NM_005540	exon7	c.T421A	p.F141I	ACAGGAATTCAGG	.	20.0	9.0	29.0	0.0	.	Atlas-SNP
NLRP3	114548	hgsc.bcm.edu	37	1	247599417	247599417	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	NLRP3-674	NM_001243133	exon6	c.C2638G	p.P880A	AAGAATCCACAGT	.	103.0	45.0	106.0	0.0	.	Atlas-SNP
SNTA1	6640	hgsc.bcm.edu	37	20	31996515	31996515	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	SNTA1-91	NM_003098	exon7	c.G1417A	p.G473S	TCTCGCCTTCAGC	.	243.0	102.0	235.0	0.0	.	Atlas-SNP
TMEM247	388946	hgsc.bcm.edu	37	2	46707808	46707808	+	Missense_Mutation	SNP	C	C	G	rs74318890		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	.	NM_001145051	exon2	c.C382G	p.Q128E	CAGCGGCAGCGGC	.	249.0	24.0	171.0	0.0	G|1.000;|0.000	Atlas-SNP
TTN	7273	hgsc.bcm.edu	37	2	179512177	179512177	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	TTN-636	NM_001267550	exon214	c.G40072T	p.E13358X	TTTTCTCAGGCAC	.	90.0	29.0	131.0	0.0	.	Atlas-SNP
KIF1A	547	hgsc.bcm.edu	37	2	241696843	241696843	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	KIF1A-91	NM_001244008	exon27	c.G2751T	p.E917D	CTCATCCTCCTCC	.	94.0	7.0	106.0	0.0	.	Atlas-SNP
LNX1	84708	hgsc.bcm.edu	37	4	54439911	54439911	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	LNX1-229	NM_001126328	exon2	c.T259A	p.C87S	TCTTGCAGTGCTG	.	236.0	90.0	243.0	0.0	.	Atlas-SNP
LNX1	84708	hgsc.bcm.edu	37	4	54440019	54440019	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	LNX1-229	NM_001126328	exon2	c.C151T	p.P51S	CCAGGGGGTCCAG	.	183.0	83.0	206.0	0.0	.	Atlas-SNP
PCDHA3	56145	hgsc.bcm.edu	37	5	140182624	140182624	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	PCDHA3-98	NM_031497	exon1	c.G1842T	p.G614G	GCCTGGGACCGGC	.	368.0	80.0	50.0	0.0	.	Atlas-SNP
ATP10B	23120	hgsc.bcm.edu	37	5	160025960	160025960	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	ATP10B-72	NM_025153	exon22	c.C3381T	p.L1127L	CCAGAAGAGCAGG	.	168.0	88.0	95.0	0.0	.	Atlas-SNP
MIER3	166968	hgsc.bcm.edu	37	5	56224609	56224609	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	MIER3-90	NM_152622	exon10	c.907delA	p.I303fs	.	.	184.0	45.0	131.0	0.0	.	Atlas-Indel
BEND3	57673	hgsc.bcm.edu	37	6	107391692	107391692	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	BEND3-71	NM_001080450	exon5	c.G703A	p.E235K	CCATCTCAGTGGG	.	206.0	16.0	162.0	0.0	.	Atlas-SNP
ECT2L	345930	hgsc.bcm.edu	37	6	139189242	139189242	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	ECT2L-22	NM_001077706	exon13	c.C1477A	p.Q493K	ACAGGGCAGTTTA	.	176.0	22.0	183.0	0.0	.	Atlas-SNP
CUX1	1523	hgsc.bcm.edu	37	7	101758537	101758537	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	CUX1-160	NM_001202545	exon7	c.G553A	p.E185K	TACGATGAAGAAA	.	153.0	24.0	120.0	0.0	.	Atlas-SNP
