Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Algorithm
KRTAP5-4	387267	hgsc.bcm.edu	37	11	1643258	1643258	+	Silent	SNP	C	C	T	rs28696103		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	.	NM_001012709	exon1	c.G66A	p.G22G	ACAGCCCCCACAG	.	245.0	25.0	66.0	0.0	.	Atlas-SNP
RSF1	51773	hgsc.bcm.edu	37	11	77412599	77412599	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	RSF1-93	NM_016578	exon6	c.A1675G	p.T559A	ACTCGGTGGAAGA	.	69.0	28.0	66.0	0.0	.	Atlas-SNP
ZNF384	171017	hgsc.bcm.edu	37	12	6777075	6777075	+	Silent	SNP	C	C	T	rs1052680	alternate_allele	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	ZNF384-1083	NM_001135734	exon11	c.G1539A	p.Q513Q	TTGCTGCTGCTGC	.	59.0	4.0	16.0	0.0	C|1.000;|0.000	Atlas-SNP
KRTAP4-8	728224	hgsc.bcm.edu	37	17	39254013	39254013	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	.	NM_031960	exon1	c.C324G	p.S108R	GCAGCAGCTGGAC	.	123.0	22.0	18.0	0.0	.	Atlas-SNP
KRTAP4-11	653240	hgsc.bcm.edu	37	17	39274238	39274238	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	.	NM_033059	exon1	c.T330C	p.C110C	GGGGCGACAGCAG	.	135.0	10.0	22.0	0.0	.	Atlas-SNP
BPTF	2186	hgsc.bcm.edu	37	17	65955758	65955758	+	Silent	SNP	T	T	C	rs202116659		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	BPTF-94	NM_182641	exon24	c.T8028C	p.A2676A	ACCAGCTCCTCCA	.	50.0	9.0	63.0	0.0	.	Atlas-SNP
FAM71E2	284418	hgsc.bcm.edu	37	19	55869899	55869899	+	Silent	SNP	T	T	G	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	.	NM_001145402	exon9	c.A2337C	p.P779P	GCCCCATGGCTGC	.	67.0	5.0	17.0	0.0	.	Atlas-SNP
FAM71E2	284418	hgsc.bcm.edu	37	19	55869902	55869902	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	.	NM_001145402	exon9	c.G2334A	p.Q778Q	CCATGGCTGCTCC	.	66.0	5.0	15.0	0.0	.	Atlas-SNP
SZT2	23334	hgsc.bcm.edu	37	1	43891735	43891735	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	SZT2-144	NM_015284	exon21	c.G2956A	p.V986I	ACCTGCGTCCATG	.	117.0	50.0	111.0	0.0	.	Atlas-SNP
L1TD1	54596	hgsc.bcm.edu	37	1	62675591	62675591	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	L1TD1-92	NM_019079	exon4	c.C1145T	p.S382F	AGTTTTCCGAGCT	.	198.0	15.0	216.0	0.0	.	Atlas-SNP
TMC2	117532	hgsc.bcm.edu	37	20	2573005	2573005	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	TMC2-93	NM_080751	exon8	c.G884A	p.R295Q	TGCCTCGGGCTGA	.	189.0	61.0	130.0	0.0	.	Atlas-SNP
FMNL2	114793	hgsc.bcm.edu	37	2	153476069	153476069	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	FMNL2-516	NM_052905	exon15	c.C1674A	p.P558P	GCCGCCCCCTCCT	.	10.0	5.0	15.0	0.0	.	Atlas-SNP
FANCD2	2177	hgsc.bcm.edu	37	3	10108898	10108898	+	Silent	SNP	A	A	G	rs77246387	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	FANCD2-229	NM_033084	exon26	c.A2391G	p.V797V	GATTGTAAATGCC	.	89.0	7.0	85.0	0.0	A|0.909;G|0.091	Atlas-SNP
FANCD2	2177	hgsc.bcm.edu	37	3	10108913	10108913	+	Missense_Mutation	SNP	G	G	T	rs80258959	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	FANCD2-229	NM_033084	exon26	c.G2406T	p.Q802H	CTGCCAGGAAACA	.	119.0	6.0	96.0	0.0	G|0.990;T|0.010	Atlas-SNP
PRSS42	339906	hgsc.bcm.edu	37	3	46875395	46875395	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	PRSS42-91	NM_182702	exon1	c.C191A	p.T64K	AAGGACGTAAACA	.	78.0	4.0	29.0	0.0	.	Atlas-SNP
UBA6	55236	hgsc.bcm.edu	37	4	68510476	68510476	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	UBA6-90	NM_018227	exon17	c.C1416A	p.G472G	TTCACAGCCTATG	.	183.0	23.0	194.0	0.0	.	Atlas-SNP
LRCH4	4034	hgsc.bcm.edu	37	7	100175783	100175783	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	LRCH4-136	NM_002319	exon7	c.A947T	p.E316V	CTTACCTCATTTC	.	124.0	12.0	111.0	0.0	.	Atlas-SNP
UBE3C	9690	hgsc.bcm.edu	37	7	157013436	157013436	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	UBE3C-704	NM_014671	exon15	c.G1968T	p.M656I	GCGGATGGGGAGG	.	66.0	4.0	66.0	0.0	.	Atlas-SNP
MYO1G	64005	hgsc.bcm.edu	37	7	45009379	45009387	+	In_Frame_Del	DEL	GCCAGCAGA	GCCAGCAGA	-	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	GCCAGCAGA	GCCAGCAGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	MYO1G-137	NM_033054	exon11	c.1421_1429del	p.474_477del	.	.	125.0	38.0	77.0	0.0	.	Atlas-Indel
EPPK1	83481	hgsc.bcm.edu	37	8	144940290	144940290	+	Missense_Mutation	SNP	C	C	G	rs201976887		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	EPPK1-25	NM_031308	exon1	c.G7132C	p.D2378H	TGGGGTCGGCCAG	.	442.0	29.0	68.0	0.0	.	Atlas-SNP
PTPDC1	138639	hgsc.bcm.edu	37	9	96846961	96846961	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	PTPDC1-227	NM_152422	exon1	c.A149T	p.K50M	CCACGAAGCTGCT	.	124.0	18.0	57.0	0.0	.	Atlas-SNP
MXRA5	25878	hgsc.bcm.edu	37	X	3240298	3240298	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	MXRA5-136	NM_015419	exon5	c.G3428C	p.S1143T	TGAGTGCTCATGG	.	119.0	55.0	139.0	0.0	.	Atlas-SNP
