Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Algorithm
KRTAP5-5	439915	hgsc.bcm.edu	37	11	1651229	1651229	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	KRTAP5-5-23	NM_001001480	exon1	c.G159A	p.A53A	CTGTGCGGGCTGT	.	66.0	15.0	51.0	0.0	.	Atlas-SNP
POLR2M	81488	hgsc.bcm.edu	37	15	58001174	58001174	+	Missense_Mutation	SNP	A	A	C	rs61758130	bycluster;byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	.	NM_015532	exon2	c.A376C	p.T126P	TCTCAAACCTCAC	.	136.0	7.0	168.0	0.0	A|0.119;C|0.881	Atlas-SNP
GOT2	2806	hgsc.bcm.edu	37	16	58742148	58742148	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	GOT2-91	NM_002080	exon10	c.G1220A	p.R407H	GAGATGCGGCCAT	.	94.0	28.0	107.0	0.0	.	Atlas-SNP
ZFHX3	463	hgsc.bcm.edu	37	16	72993517	72993517	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	ZFHX3-72	NM_006885	exon2	c.C528T	p.G176G	CCCCGCGCCAGGG	.	86.0	30.0	98.0	0.0	.	Atlas-SNP
THRA	7067	hgsc.bcm.edu	37	17	38240130	38240130	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	THRA-186	NM_199334	exon5	c.T265C	p.Y89H	CCCACCTATTCCT	.	85.0	24.0	145.0	0.0	.	Atlas-SNP
EMR1	2015	hgsc.bcm.edu	37	19	6937659	6937659	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	EMR1-526	NM_001974	exon20	c.G2655A	p.T885T	CAAGACGGTGAGA	.	104.0	29.0	100.0	0.0	.	Atlas-SNP
MYO9B	4650	hgsc.bcm.edu	37	19	17296757	17296757	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	MYO9B-67	NM_001130065	exon18	c.C2524T	p.L842L	GAGGCACTGGGGA	.	132.0	25.0	116.0	0.0	.	Atlas-SNP
SLC1A5	6510	hgsc.bcm.edu	37	19	47280654	47280654	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	SLC1A5-90	NM_001145145	exon5	c.C461T	p.T154M	GGCAGCGTGGCGG	.	121.0	25.0	111.0	0.0	.	Atlas-SNP
SLC8A2	6543	hgsc.bcm.edu	37	19	47935685	47935685	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	SLC8A2-94	NM_015063	exon9	c.G2128A	p.E710K	CGTCCTCCTCCTC	.	95.0	14.0	87.0	0.0	.	Atlas-SNP
NEFH	4744	hgsc.bcm.edu	37	22	29885594	29885594	+	Silent	SNP	A	A	T	rs79235463	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	NEFH-90	NM_021076	exon4	c.A1965T	p.P655P	GTCCCCAGAGAAG	.	143.0	54.0	200.0	0.0	A|0.500;T|0.500	Atlas-SNP
BMPR2	659	hgsc.bcm.edu	37	2	203379616	203379616	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	BMPR2,colon,carcinoma,-1	BMPR2-1003	NM_001204	exon5	c.C535T	p.R179C	GGAGACCGTAAAC	.	32.0	2.0	70.0	0.0	.	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	37	3	41266136	41266136	+	Missense_Mutation	SNP	T	T	C	rs121913407	bycluster	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	CTNNB1,NS,carcinoma,0	CTNNB1-24361	NM_001098210	exon3	c.T133C	p.S45P	GCTCCTTCTCTGA	.	155.0	60.0	159.0	1.0	.	Atlas-SNP
FAM208A	23272	hgsc.bcm.edu	37	3	56667845	56667845	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	.	NM_001112736	exon18	c.G2974A	p.D992N	ACACGTCATCCTC	.	66.0	22.0	112.0	0.0	.	Atlas-SNP
ACPP	55	hgsc.bcm.edu	37	3	132061444	132061444	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	ACPP-91	NM_001099	exon6	c.C604T	p.L202F	CAGGACCTTTTTG	.	40.0	10.0	35.0	0.0	.	Atlas-SNP
PCDHGA2	56113	hgsc.bcm.edu	37	5	140719726	140719726	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	PCDHGA2-71	NM_032009	exon1	c.G1188T	p.K396N	AGAAAAGTCAGTA	.	117.0	18.0	86.0	0.0	.	Atlas-SNP
RP1	6101	hgsc.bcm.edu	37	8	55541829	55541829	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	RP1,NS,carcinoma,-1	RP1-102	NM_006269	exon4	c.C5387T	p.T1796M	GCCCAACGATGGA	.	225.0	50.0	173.0	0.0	.	Atlas-SNP
TMEM245	23731	hgsc.bcm.edu	37	9	111812906	111812906	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	.	NM_032012	exon13	c.C1921A	p.L641I	TCAAGAGTGTAGT	.	244.0	13.0	457.0	0.0	.	Atlas-SNP
ATP1B4	23439	hgsc.bcm.edu	37	X	119504588	119504588	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	ATP1B4-131	NM_001142447	exon3	c.A347G	p.Y116C	TCATTTACTTCTT	.	97.0	32.0	109.0	0.0	.	Atlas-SNP
