Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Algorithm
ART5	116969	hgsc.bcm.edu	37	11	3661315	3661315	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	ART5-91	NM_053017	exon2	c.G344A	p.R115Q	CCCGTCCGCACGG	.	141.0	8.0	143.0	0.0	.	Atlas-SNP
SRRM4	84530	hgsc.bcm.edu	37	12	119594447	119594447	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	SRRM4-2	NM_194286	exon13	c.A1680C	p.R560S	CCGGAGACGGAGC	.	74.0	17.0	8.0	0.0	.	Atlas-SNP
SRRM4	84530	hgsc.bcm.edu	37	12	119594453	119594453	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	SRRM4-2	NM_194286	exon13	c.C1686A	p.S562R	ACGGAGCCGGACC	.	59.0	10.0	6.0	0.0	.	Atlas-SNP
NDRG2	57447	hgsc.bcm.edu	37	14	21488972	21488972	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	NDRG2-154	NM_016250	exon7	c.G397C	p.A133P	CTCCAGCTCCAAC	.	34.0	22.0	36.0	0.0	.	Atlas-SNP
TTLL6	284076	hgsc.bcm.edu	37	17	46846505	46846505	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	TTLL6-90	NM_001130918	exon15	c.C2522A	p.T841N	CTCAGAGTAACAT	.	78.0	4.0	108.0	0.0	.	Atlas-SNP
FADS6	283985	hgsc.bcm.edu	37	17	72889676	72889677	+	In_Frame_Ins	INS	-	-	GGCTCCGTAGGTTCCATC	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	FADS6-22	NM_178128	exon1	c.18_19insGATGGAACCTACGGAGCC	p.P6delinsPMEPTEP	.	.	115.0	23.0	37.0	0.0	.	Pindel
ZNF676	163223	hgsc.bcm.edu	37	19	22363460	22363460	+	Silent	SNP	A	A	G	rs78757874		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	ZNF676-90	NM_001001411	exon3	c.T1059C	p.T353T	ATGTTTAGTAAGG	.	40.0	5.0	20.0	0.0	.	Atlas-SNP
FBLN2	2199	hgsc.bcm.edu	37	3	13612958	13612958	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	FBLN2-91	NM_001998	exon2	c.T1103C	p.V368A	CTCTCGTCCCAAC	.	110.0	8.0	33.0	0.0	.	Atlas-SNP
CRIPAK	285464	hgsc.bcm.edu	37	4	1388664	1388664	+	Missense_Mutation	SNP	T	T	C	rs199774688	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	CRIPAK-90	NM_175918	exon1	c.T365C	p.M122T	TGCCGATGCGGAG	.	135.0	8.0	26.0	0.0	T|0.995;C|0.005	Atlas-SNP
WWP1	11059	hgsc.bcm.edu	37	8	87437479	87437479	+	Silent	SNP	T	T	G	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	WWP1-659	NM_007013	exon10	c.T1089G	p.G363G	TCATGGTAGAACC	.	56.0	19.0	32.0	0.0	.	Atlas-SNP
PLEC	5339	hgsc.bcm.edu	37	8	144990396	144990396	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	PLEC-141	NM_201383	exon32	c.C13605A	p.Y4535X	CGAGGCGTAGCGG	.	63.0	4.0	17.0	0.0	.	Atlas-SNP
HDAC6	10013	hgsc.bcm.edu	37	X	48676475	48676475	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	HDAC6-230	NM_006044	exon21	c.C1953A	p.H651Q	TGTCCACCACGGT	.	492.0	204.0	322.0	0.0	.	Atlas-SNP
