Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Algorithm
MUC5B	727897	hgsc.bcm.edu	37	11	1253976	1253976	+	Missense_Mutation	SNP	A	A	G	rs76956995		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	.	NM_002458	exon17	c.A2041G	p.S681G	CAGCTCAGCGACT	.	92.0	6.0	49.0	0.0	.	Atlas-SNP
MUC5B	727897	hgsc.bcm.edu	37	11	1253980	1253980	+	Missense_Mutation	SNP	A	A	G	rs202127660		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	.	NM_002458	exon17	c.A2045G	p.D682G	TCAGCGACTGGAG	.	90.0	7.0	45.0	0.0	.	Atlas-SNP
MMP8	4317	hgsc.bcm.edu	37	11	102586132	102586132	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	MMP8-229	NM_002424	exon7	c.C939T	p.V313V	CATTTCGACTCTT	.	68.0	8.0	68.0	0.0	.	Atlas-SNP
NF1	4763	hgsc.bcm.edu	37	17	29676201	29676202	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	NF1-3353	NM_001042492	exon49	c.7252_7253del	p.2418_2418del	.	.	44.0	20.0	77.0	0.0	.	Pindel
ZNRF4	148066	hgsc.bcm.edu	37	19	5456615	5456615	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	ZNRF4-135	NM_181710	exon1	c.C1113T	p.D371D	CAGGGACGAGGAC	.	64.0	4.0	53.0	0.0	.	Atlas-SNP
BCL2L1	598	hgsc.bcm.edu	37	20	30309831	30309831	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	BCL2L1-1084	NM_138578	exon2	c.C191T	p.A64V	TTCACCGCGGGGC	.	95.0	38.0	70.0	0.0	.	Atlas-SNP
USP34	9736	hgsc.bcm.edu	37	2	61463189	61463189	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	USP34-579	NM_014709	exon56	c.T6938G	p.L2313R	GTCTCTAGGACAA	.	58.0	23.0	37.0	0.0	.	Atlas-SNP
PRR21	643905	hgsc.bcm.edu	37	2	240982362	240982362	+	Missense_Mutation	SNP	G	G	A	rs151246209	byfrequency	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	PRR21-70	NM_001080835	exon1	c.C38T	p.P13L	ATGAAGGGCCGTG	.	107.0	9.0	113.0	0.0	G|0.991;A|0.009	Atlas-SNP
PRR21	643905	hgsc.bcm.edu	37	2	240982379	240982379	+	Silent	SNP	T	T	C	rs138056768	byfrequency	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	PRR21-70	NM_001080835	exon1	c.A21G	p.T7T	AAGAGCTGTGGAT	.	92.0	12.0	90.0	0.0	T|0.989;C|0.011	Atlas-SNP
PRR21	643905	hgsc.bcm.edu	37	2	240982389	240982389	+	Missense_Mutation	SNP	C	C	G	rs143417758	byfrequency	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	PRR21-70	NM_001080835	exon1	c.G11C	p.C4S	GATGAACAGGCAT	.	86.0	5.0	88.0	0.0	C|0.998;G|0.002	Atlas-SNP
ROBO1	6091	hgsc.bcm.edu	37	3	78710311	78710311	+	Missense_Mutation	SNP	G	G	T	rs201271022	alternate_allele	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	ROBO1-67	NM_002941	exon16	c.C2189A	p.T730K	GCTGGCGTCCTCA	.	57.0	4.0	45.0	0.0	.	Atlas-SNP
CRIPAK	285464	hgsc.bcm.edu	37	4	1388848	1388848	+	Silent	SNP	A	A	C	rs74511366	byfrequency	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	CRIPAK-90	NM_175918	exon1	c.A549C	p.P183P	CGTGCCAACGTGG	.	93.0	9.0	15.0	0.0	A|0.993;C|0.000;G|0.006	Atlas-SNP
CRIPAK	285464	hgsc.bcm.edu	37	4	1388974	1388974	+	Silent	SNP	T	T	C	rs71614969	bycluster	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	CRIPAK-90	NM_175918	exon1	c.T675C	p.D225D	TGCCGATGCGGAG	.	100.0	8.0	19.0	0.0	C|1.000;|0.000	Atlas-SNP
AMBN	258	hgsc.bcm.edu	37	4	71462749	71462749	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	AMBN-94	NM_016519	exon3	c.G118T	p.A40S	GGTATGGCTAGTT	.	72.0	4.0	32.0	0.0	.	Atlas-SNP
FAM170A	340069	hgsc.bcm.edu	37	5	118970068	118970068	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	FAM170A-91	NM_182761	exon3	c.G625A	p.V209I	CCCACCGTTGAGG	.	115.0	44.0	92.0	0.0	.	Atlas-SNP
FAM26F	441168	hgsc.bcm.edu	37	6	116783563	116783563	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	FAM26F-68	NM_001010919	exon2	c.A471A	p.G157G	CAACCAGGCCAAG	.	24.0	15.0	14.0	0.0	.	Atlas-SNP
GET4	51608	hgsc.bcm.edu	37	7	930643	930643	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	GET4-90	NM_015949	exon5	c.A545G	p.Y182C	TGGAGTATTCCAC	.	254.0	71.0	221.0	0.0	.	Atlas-SNP
TNRC18	84629	hgsc.bcm.edu	37	7	5352665	5352665	+	Silent	SNP	T	T	G	novel		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	TNRC18-46	NM_001080495	exon27	c.A7857C	p.S2619S	GGAGGATGAGGAG	.	12.0	8.0	7.0	0.0	.	Atlas-SNP
MAGT1	84061	hgsc.bcm.edu	37	X	77111010	77111010	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	MAGT1-63	NM_032121	exon6	c.C846A	p.H282Q	TCCCGTGTGGGGA	.	72.0	4.0	94.0	0.0	.	Atlas-SNP
