Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Algorithm
FBXO18	84893	hgsc.bcm.edu	37	10	5948345	5948345	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	FBXO18-228	NM_001258452	exon3	c.A281G	p.D94G	CAGAGGACAGTAC	.	464.0	99.0	225.0	0.0	.	Atlas-SNP
SFMBT2	57713	hgsc.bcm.edu	37	10	7269870	7269870	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SFMBT2-141	NM_001029880	exon10	c.G1150C	p.D384H	GATAATCTGCCCA	.	108.0	59.0	54.0	0.0	.	Atlas-SNP
TAF3	83860	hgsc.bcm.edu	37	10	8051255	8051255	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	TAF3-69	NM_031923	exon5	c.G2530A	p.V844M	GCCCCCGTGCGCA	.	75.0	37.0	17.0	0.0	.	Atlas-SNP
KIAA1217	56243	hgsc.bcm.edu	37	10	24783527	24783527	+	Missense_Mutation	SNP	C	C	T	rs148941784	byfrequency	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	KIAA1217-98	NM_019590	exon7	c.C1778T	p.A593V	AAGATGCGTCTAG	.	56.0	6.0	19.0	0.0	C|0.999;T|0.001	Atlas-SNP
RASSF4	83937	hgsc.bcm.edu	37	10	45484790	45484790	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	RASSF4-290	NM_032023	exon7	c.G600A	p.L200L	AACCCTGCAGGTG	.	299.0	148.0	162.0	0.0	.	Atlas-SNP
PCDH15	65217	hgsc.bcm.edu	37	10	56423995	56423995	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PCDH15-193	NM_001142767	exon2	c.T28G	p.C10G	CTAAACATGTCCA	.	108.0	51.0	44.0	0.0	.	Atlas-SNP
EGR2	1959	hgsc.bcm.edu	37	10	64573625	64573625	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	EGR2-92	NM_000399	exon2	c.T773C	p.V258A	GGGGGCACCCGCA	.	146.0	62.0	108.0	0.0	.	Atlas-SNP
C10orf118	55088	hgsc.bcm.edu	37	10	115904312	115904312	+	Missense_Mutation	SNP	C	C	T	rs201374071		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	C10orf118-92	NM_018017	exon6	c.G1165A	p.V389I	TGATGACGTGAGA	.	238.0	35.0	120.0	0.0	C|0.999;T|0.000	Atlas-SNP
PNLIPRP3	119548	hgsc.bcm.edu	37	10	118220558	118220558	+	Missense_Mutation	SNP	G	G	A	rs114674677	byfrequency	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PNLIPRP3-91	NM_001011709	exon6	c.G646A	p.V216I	GTTGACGTTATTC	.	182.0	80.0	106.0	0.0	G|0.999;A|0.001	Atlas-SNP
PTCHD3	374308	hgsc.bcm.edu	37	10	27687470	27687470	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PTCHD3-94	NM_001034842	exon4	c.2058delT	p.N686fs	.	.	30.0	12.0	17.0	0.0	.	Atlas-Indel
ZNF25	219749	hgsc.bcm.edu	37	10	38241708	38241710	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	AGA	AGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ZNF25-154	NM_145011	exon6	c.717_719del	p.239_240del	.	.	195.0	74.0	117.0	0.0	.	Atlas-Indel
SYT8	90019	hgsc.bcm.edu	37	11	1858479	1858479	+	Missense_Mutation	SNP	G	G	A	rs138799724	byfrequency	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SYT8-91	NM_138567	exon9	c.G1024A	p.V342I	GAGCCCGTAGGCA	.	24.0	11.0	17.0	0.0	G|0.998;A|0.002	Atlas-SNP
HPS5	11234	hgsc.bcm.edu	37	11	18303703	18303703	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	HPS5-133	NM_181508	exon21	c.G2781A	p.T927T	TGGCCTCGTGCTC	.	72.0	66.0	85.0	0.0	.	Atlas-SNP
CADM1	23705	hgsc.bcm.edu	37	11	115111112	115111112	+	Silent	SNP	G	G	A	rs138296059		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	CADM1-92	NM_014333	exon2	c.C153T	p.D51D	TGTCACGTCTTTC	.	86.0	34.0	96.0	0.0	G|1.000;A|0.000	Atlas-SNP
TRIM21	6737	hgsc.bcm.edu	37	11	4409704	4409705	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	TRIM21-229	NM_003141	exon4	c.561_562insA	p.N187fs	.	.	33.0	22.0	50.0	0.0	.	Atlas-Indel
RNF141	50862	hgsc.bcm.edu	37	11	10540661	10540663	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	CTC	CTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	RNF141-226	NM_016422	exon5	c.461_463del	p.154_155del	.	.	44.0	35.0	34.0	0.0	.	Atlas-Indel
EXPH5	23086	hgsc.bcm.edu	37	11	108383875	108383876	+	Frame_Shift_Ins	INS	-	-	TG	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	EXPH5-95	NM_015065	exon6	c.2359_2360insCA	p.D787fs	.	.	77.0	59.0	73.0	0.0	.	Atlas-Indel
MLL	4297	hgsc.bcm.edu	37	11	118344494	118344495	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	MLL-1255	NM_005933	exon3	c.2619_2620del	p.873_874del	.	.	46.0	38.0	46.0	0.0	.	Atlas-Indel
CCDC77	84318	hgsc.bcm.edu	37	12	539878	539878	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	CCDC77-91	NM_001130148	exon5	c.A463C	p.S155R	GAGCAGAGTGAAT	.	169.0	77.0	94.0	0.0	.	Atlas-SNP
EFCAB4B	84766	hgsc.bcm.edu	37	12	3736625	3736625	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	EFCAB4B-92	NM_001144958	exon17	c.C1909T	p.R637W	ACCGCCGGACCGA	.	198.0	35.0	91.0	0.0	.	Atlas-SNP
PEX5	5830	hgsc.bcm.edu	37	12	7356126	7356126	+	Silent	SNP	T	T	G	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PEX5-91	NM_001131024	exon9	c.T834G	p.L278L	TGACCTTACGTCA	.	245.0	138.0	123.0	0.0	.	Atlas-SNP
MAGOHB	55110	hgsc.bcm.edu	37	12	10766108	10766108	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	MAGOHB-153	NM_018048	exon1	c.C24T	p.Y8Y	GCGCAGGTAGAAA	.	260.0	107.0	89.0	0.0	.	Atlas-SNP
SLC2A13	114134	hgsc.bcm.edu	37	12	40422218	40422218	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SLC2A13-515	NM_052885	exon3	c.A810T	p.G270G	AGTCTGTCCTTTC	.	62.0	9.0	42.0	0.0	.	Atlas-SNP
CACNB3	784	hgsc.bcm.edu	37	12	49218962	49218962	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	CACNB3-90	NM_001206915	exon6	c.C386T	p.P129L	TTCCCCCATATGA	.	333.0	59.0	161.0	0.0	.	Atlas-SNP
LETMD1	25875	hgsc.bcm.edu	37	12	51453177	51453177	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	LETMD1-90	NM_015416	exon9	c.T1046C	p.V349A	ACGTGGTCCTGCT	.	406.0	187.0	175.0	0.0	.	Atlas-SNP
HOXC4	3221	hgsc.bcm.edu	37	12	54448765	54448765	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	HOXC4-91	NM_014620	exon4	c.C571A	p.H191N	ATCGCCCACTCGC	.	430.0	196.0	200.0	0.0	.	Atlas-SNP
CCDC53	51019	hgsc.bcm.edu	37	12	102437938	102437938	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	.	NM_016053	exon4	c.A269G	p.N90S	GTGACATTTAAAG	.	224.0	96.0	85.0	0.0	.	Atlas-SNP
ALDH1L2	160428	hgsc.bcm.edu	37	12	105446693	105446693	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ALDH1L2-91	NM_001034173	exon11	c.A1304T	p.N435I	ATTTCATTGACCT	.	196.0	68.0	108.0	0.0	.	Atlas-SNP
DDX47	51202	hgsc.bcm.edu	37	12	12974637	12974638	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	DDX47-226	NM_201224	exon4	c.419_420insA	p.A140fs	.	.	64.0	23.0	34.0	0.0	.	Atlas-Indel
CBX5	23468	hgsc.bcm.edu	37	12	54645832	54645832	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	CBX5-226	NM_001127321	exon3	c.318delG	p.K106fs	.	.	25.0	13.0	13.0	0.0	.	Atlas-Indel
XPOT	11260	hgsc.bcm.edu	37	12	64812755	64812755	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	XPOT-652	NM_007235	exon6	c.369delG	p.K123fs	.	.	247.0	135.0	120.0	0.0	.	Atlas-Indel
KRR1	11103	hgsc.bcm.edu	37	12	75893593	75893593	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	KRR1-92	NM_007043	exon10	c.1143delG	p.K381fs	.	.	59.0	19.0	22.0	0.0	.	Atlas-Indel
SETD1B	23067	hgsc.bcm.edu	37	12	122242658	122242658	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SETD1B-86	NM_015048	exon1	c.14delA	p.H5fs	.	.	163.0	70.0	85.0	0.0	.	Atlas-Indel
MPHOSPH9	10198	hgsc.bcm.edu	37	12	123645709	123645710	+	Nonsense_Mutation	INS	-	-	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	MPHOSPH9-514	NM_022782	exon18	c.2899_2900insT	p.D967_E968delinsX	.	.	68.0	33.0	35.0	0.0	.	Atlas-Indel
PRB3	5544	hgsc.bcm.edu	37	12	11420332	11420458	+	Frame_Shift_Del	DEL	GAGGGTGGGGGACCTTGAGGTTTGTTGCCTCCTTGTGAAGGTGGTCCTTCTGGCTTTCCTGGACGAGGTGGGGGACCTTGGGACTGGTTTCCTCCTTGTGGGGGTGGTCCTTCTGGCTTTCCTGGAC	GAGGGTGGGGGACCTTGAGGTTTGTTGCCTCCTTGTGAAGGTGGTCCTTCTGGCTTTCCTGGACGAGGTGGGGGACCTTGGGACTGGTTTCCTCCTTGTGGGGGTGGTCCTTCTGGCTTTCCTGGAC	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	GAGGGTGGGGGACCTTGAGGTTTGTTGCCTCCTTGTGAAGGTGGTCCTTCTGGCTTTCCTGGACGAGGTGGGGGACCTTGGGACTGGTTTCCTCCTTGTGGGGGTGGTCCTTCTGGCTTTCCTGGAC	GAGGGTGGGGGACCTTGAGGTTTGTTGCCTCCTTGTGAAGGTGGTCCTTCTGGCTTTCCTGGACGAGGTGGGGGACCTTGGGACTGGTTTCCTCCTTGTGGGGGTGGTCCTTCTGGCTTTCCTGGAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PRB3-1	NM_006249	exon4	c.725_725del	p.242_242del	.	.	51.0	11.0	23.0	0.0	.	Pindel
SLC15A1	6564	hgsc.bcm.edu	37	13	99339879	99339879	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SLC15A1-91	NM_005073	exon21	c.G1783A	p.E595K	CCACTTCGCCACA	.	118.0	19.0	116.0	0.0	.	Atlas-SNP
CCDC168	643677	hgsc.bcm.edu	37	13	103391148	103391148	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	.	NM_001146197	exon4	c.G11899T	p.E3967X	AAATCTCAACTTC	.	37.0	32.0	40.0	0.0	.	Atlas-SNP
CCDC168	643677	hgsc.bcm.edu	37	13	103381996	103381996	+	Frame_Shift_Del	DEL	A	A	-	rs5806321		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	.	NM_001146197	exon4	c.21052delG	p.A7018fs	.	.	70.0	21.0	54.0	0.0	.	Atlas-Indel
ATP7B	540	hgsc.bcm.edu	37	13	52548260	52548261	+	Frame_Shift_Ins	INS	-	-	AA	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ATP7B-92	NM_000053	exon2	c.1096_1097insTT	p.A366fs	.	.	132.0	80.0	137.0	0.0	.	Pindel
MYH6	4624	hgsc.bcm.edu	37	14	23859651	23859651	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	MYH6-94	NM_002471	exon26	c.G3347A	p.R1116H	TCGATGCGTGCCT	.	103.0	39.0	23.0	0.0	.	Atlas-SNP
LRRC16B	90668	hgsc.bcm.edu	37	14	24538366	24538366	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	LRRC16B-139	NM_138360	exon39	c.C4003T	p.R1335W	GGCCGGCGGACTG	.	241.0	106.0	128.0	0.0	.	Atlas-SNP
GPR68	8111	hgsc.bcm.edu	37	14	91701094	91701094	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	GPR68-91	NM_001177676	exon2	c.C301A	p.L101M	CGTACAGGAGGAT	.	404.0	199.0	186.0	0.0	.	Atlas-SNP
GSC	145258	hgsc.bcm.edu	37	14	95235475	95235475	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	GSC-90	NM_173849	exon2	c.G435A	p.S145S	GGTGCGCGACAGC	.	343.0	83.0	114.0	0.0	.	Atlas-SNP
NYNRIN	57523	hgsc.bcm.edu	37	14	24885257	24885258	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	NYNRIN-3	NM_025081	exon9	c.4301_4302del	p.1434_1434del	.	.	123.0	74.0	68.0	0.0	.	Atlas-Indel
FBXO34	55030	hgsc.bcm.edu	37	14	55818555	55818555	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	FBXO34-228	NM_017943	exon2	c.1446delG	p.L482fs	.	.	195.0	78.0	103.0	0.0	.	Atlas-Indel
BRF1	2972	hgsc.bcm.edu	37	14	105693009	105693010	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	BRF1-155	NM_001242786	exon8	c.532_533insC	p.S178fs	.	.	75.0	12.0	45.0	0.0	.	Atlas-Indel
APBA2	321	hgsc.bcm.edu	37	15	29393975	29393975	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	APBA2-90	NM_005503	exon9	c.C1512T	p.F504F	TGTGTTCGAGTCG	.	308.0	132.0	132.0	0.0	.	Atlas-SNP
LPCAT4	254531	hgsc.bcm.edu	37	15	34651423	34651423	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	LPCAT4-90	NM_153613	exon14	c.C1480T	p.R494X	TGCCTCGAGAGGT	.	93.0	48.0	41.0	0.0	.	Atlas-SNP
SPRED1	161742	hgsc.bcm.edu	37	15	38643332	38643332	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SPRED1-1085	NM_152594	exon7	c.A802G	p.K268E	ATGTGGAAAAATG	.	171.0	29.0	83.0	0.0	.	Atlas-SNP
RASGRP1	10125	hgsc.bcm.edu	37	15	38786797	38786797	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	RASGRP1-697	NM_005739	exon16	c.G2045A	p.G682D	TCACTGCCAATCC	.	142.0	68.0	78.0	0.0	.	Atlas-SNP
NR2E3	10002	hgsc.bcm.edu	37	15	72105935	72105935	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	NR2E3-22	NM_014249	exon7	c.C953T	p.T318M	CCCCCACGGAGTT	.	131.0	46.0	31.0	0.0	.	Atlas-SNP
PML	5371	hgsc.bcm.edu	37	15	74315308	74315308	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PML-1083	NM_033238	exon3	c.C742T	p.Q248X	GCGCTGCAGGAGC	.	133.0	57.0	37.0	0.0	.	Atlas-SNP
KIAA1199	57214	hgsc.bcm.edu	37	15	81218052	81218052	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	KIAA1199-93	NM_018689	exon18	c.C2376T	p.H792H	GGACCACGGGGCC	.	170.0	159.0	64.0	0.0	.	Atlas-SNP
KIF7	374654	hgsc.bcm.edu	37	15	90192528	90192528	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	KIF7-523	NM_198525	exon4	c.C600T	p.N200N	CGCCGCGTTGCCC	.	152.0	80.0	33.0	0.0	.	Atlas-SNP
WDR72	256764	hgsc.bcm.edu	37	15	53908071	53908071	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	WDR72-92	NM_182758	exon15	c.2333delT	p.M778fs	.	.	128.0	23.0	69.0	0.0	.	Atlas-Indel
MNS1	55329	hgsc.bcm.edu	37	15	56736723	56736723	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	MNS1-91	NM_018365	exon5	c.606delG	p.K202fs	.	.	94.0	42.0	35.0	0.0	.	Atlas-Indel
SLTM	79811	hgsc.bcm.edu	37	15	59182525	59182526	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SLTM-91	NM_024755	exon15	c.2034_2035del	p.678_679del	.	.	135.0	27.0	82.0	0.0	.	Atlas-Indel
C15orf37	283687	hgsc.bcm.edu	37	15	80215495	80215495	+	RNA	DEL	C	C	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	.	.	.	.	.	.	.	37.0	16.0	16.0	0.0	.	Atlas-Indel
KIF7	374654	hgsc.bcm.edu	37	15	90190208	90190209	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	KIF7-523	NM_198525	exon7	c.1641_1642insG	p.G547fs	.	.	156.0	63.0	29.0	0.0	.	Atlas-Indel
B2M	567	hgsc.bcm.edu	37	15	45003781	45003782	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	B2M-93	NM_004048	exon1	c.36_37del	p.12_13del	.	.	199.0	89.0	65.0	0.0	.	Pindel
TELO2	9894	hgsc.bcm.edu	37	16	1544462	1544462	+	Silent	SNP	G	G	T	rs146829780	alternate_allele	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	TELO2-90	NM_016111	exon2	c.G180T	p.S60S	CTTCTCGCCTGTC	.	107.0	6.0	96.0	0.0	G|1.000;C|0.000	Atlas-SNP
VWA3A	146177	hgsc.bcm.edu	37	16	22128481	22128481	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	VWA3A-1	NM_173615	exon11	c.A974T	p.Y325F	ACTGCTACAGCCC	.	357.0	161.0	151.0	0.0	.	Atlas-SNP
APOBR	55911	hgsc.bcm.edu	37	16	28509449	28509449	+	Silent	SNP	C	C	T	rs186642005	by1000genomes	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	APOBR-90	NM_018690	exon3	c.C3003T	p.R1001R	GAGTCGCGTGCAC	.	34.0	15.0	13.0	0.0	C|0.999;T|0.000	Atlas-SNP
ATP2A1	487	hgsc.bcm.edu	37	16	28909569	28909569	+	Missense_Mutation	SNP	G	G	A	rs200092983		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ATP2A1-93	NM_004320	exon14	c.G1561A	p.V521I	GAGGGCGTCATCG	.	120.0	50.0	71.0	0.0	G|0.999;A|0.001	Atlas-SNP
SMG1	23049	hgsc.bcm.edu	37	16	18864971	18864974	+	Frame_Shift_Del	DEL	GAGT	GAGT	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	GAGT	GAGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SMG1-1160	NM_015092	exon31	c.4700_4703del	p.1567_1568del	.	.	222.0	87.0	122.0	0.0	.	Atlas-Indel
LAT	27040	hgsc.bcm.edu	37	16	28996226	28996227	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	LAT-44	NM_001014989	exon1	c.44_45insG	p.L15fs	.	.	58.0	24.0	35.0	0.0	.	Atlas-Indel
BCL7C	9274	hgsc.bcm.edu	37	16	30904237	30904238	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	BCL7C-227	NM_004765	exon3	c.204_205del	p.68_69del	.	.	47.0	22.0	24.0	0.0	.	Atlas-Indel
SRCAP	10847	hgsc.bcm.edu	37	16	30736371	30736371	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SRCAP-94	NM_006662	exon25	c.5625delG	p.Q1875fs	.	.	92.0	28.0	47.0	0.0	.	Pindel
ATP2A1	487	hgsc.bcm.edu	37	16	28913639	28913640	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ATP2A1-93	NM_173201	exon17	c.2456_2457insC	p.R819fs	.	.	192.0	31.0	103.0	0.0	.	Pindel
ACAP1	9744	hgsc.bcm.edu	37	17	7251702	7251702	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ACAP1-153	NM_014716	exon17	c.G1586A	p.R529Q	GAGGGCGAAGAGG	.	88.0	77.0	72.0	0.0	.	Atlas-SNP
NLGN2	57555	hgsc.bcm.edu	37	17	7318830	7318830	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	NLGN2-90	NM_020795	exon6	c.C1038T	p.R346R	CCCCAGCTACCAC	.	224.0	12.0	160.0	0.0	.	Atlas-SNP
SHISA6	388336	hgsc.bcm.edu	37	17	11461177	11461177	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SHISA6-67	NM_001173461	exon4	c.G1059A	p.P353P	GAAGCCGTTGCCA	.	128.0	113.0	107.0	0.0	.	Atlas-SNP
MYOCD	93649	hgsc.bcm.edu	37	17	12649333	12649333	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	MYOCD-93	NM_001146312	exon9	c.A1069G	p.T357A	GGACAAACTGGTG	.	98.0	94.0	75.0	0.0	.	Atlas-SNP
SLFN12	55106	hgsc.bcm.edu	37	17	33747391	33747391	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SLFN12-91	NM_018042	exon3	c.G1049A	p.S350N	TATGAACTGGAAA	.	73.0	59.0	87.0	0.0	.	Atlas-SNP
C17orf66	256957	hgsc.bcm.edu	37	17	34191866	34191866	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	C17orf66-155	NM_152781	exon4	c.A349T	p.I117F	TTTTGATGTGGGT	.	241.0	215.0	233.0	0.0	.	Atlas-SNP
KRTAP16-1	100505753	hgsc.bcm.edu	37	17	39463994	39463994	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	.	NM_001146182	exon1	c.C1512T	p.A504A	TGCTGCGGCCTCA	.	34.0	29.0	33.0	0.0	.	Atlas-SNP
PCTP	58488	hgsc.bcm.edu	37	17	53851112	53851112	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PCTP-91	NM_021213	exon4	c.C367G	p.L123V	CGAGACCTGGACA	.	158.0	143.0	137.0	0.0	.	Atlas-SNP
ANKFN1	162282	hgsc.bcm.edu	37	17	54543810	54543810	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ANKFN1-136	NM_153228	exon14	c.G1660A	p.E554K	GAGGTGGAGATGC	.	191.0	10.0	168.0	0.0	.	Atlas-SNP
PRKCA	5578	hgsc.bcm.edu	37	17	64731690	64731690	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PRKCA-1404	NM_002737	exon10	c.C1140T	p.D380D	TGATGACGTGGAG	.	249.0	228.0	276.0	2.0	.	Atlas-SNP
RPTOR	57521	hgsc.bcm.edu	37	17	78933974	78933974	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	RPTOR-847	NM_020761	exon30	c.G3574A	p.V1192I	ATCCGCGTCTACG	.	211.0	44.0	203.0	0.0	.	Atlas-SNP
SMTNL2	342527	hgsc.bcm.edu	37	17	4497117	4497119	+	Frame_Shift_Del	DEL	AGA	AGA	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	AGA	AGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SMTNL2-90	NM_198501	exon4	c.299_300del	p.100_100del	.	.	69.0	16.0	79.0	0.0	.	Atlas-Indel
TMEM97	27346	hgsc.bcm.edu	37	17	26653807	26653807	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	TMEM97-90	NM_014573	exon3	c.518delG	p.R173fs	.	.	30.0	23.0	18.0	0.0	.	Atlas-Indel
HOXB13	10481	hgsc.bcm.edu	37	17	46805884	46805884	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	HOXB13-514	NM_006361	exon1	c.73delC	p.R25fs	.	.	133.0	111.0	118.0	0.0	.	Atlas-Indel
YWHAE	7531	hgsc.bcm.edu	37	17	1265305	1265305	+	Splice_Site	DEL	A	A	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	YWHAE-659	NM_006761	exon4	c.265-2T>-	.	.	.	71.0	18.0	66.0	0.0	.	Pindel
ABHD3	171586	hgsc.bcm.edu	37	18	19244151	19244151	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ABHD3-90	NM_138340	exon5	c.A596C	p.E199A	ACTGTCTCCAAGT	.	79.0	68.0	89.0	0.0	.	Atlas-SNP
SLC39A6	25800	hgsc.bcm.edu	37	18	33706547	33706547	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SLC39A6-92	NM_012319	exon2	c.C424T	p.R142X	CTTTTCGCTTATT	.	234.0	203.0	221.0	1.0	.	Atlas-SNP
PIAS2	9063	hgsc.bcm.edu	37	18	44470593	44470593	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PIAS2-662	NM_173206	exon2	c.450delT	p.N150fs	.	.	276.0	241.0	258.0	0.0	.	Atlas-Indel
ADNP2	22850	hgsc.bcm.edu	37	18	77893731	77893732	+	Frame_Shift_Del	DEL	TA	TA	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	TA	TA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ADNP2-140	NM_014913	exon4	c.434_435del	p.145_145del	.	.	101.0	94.0	108.0	0.0	.	Atlas-Indel
CHAF1A	10036	hgsc.bcm.edu	37	19	4409751	4409751	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	CHAF1A-92	NM_005483	exon3	c.C955T	p.R319C	CCCCTCCGCAGAG	.	117.0	49.0	79.0	0.0	.	Atlas-SNP
KDM4B	23030	hgsc.bcm.edu	37	19	5151503	5151503	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	KDM4B-226	NM_015015	exon23	c.G3272T	p.R1091L	AGGGCCGGCCCGG	.	43.0	5.0	9.0	0.0	.	Atlas-SNP
FUT6	2528	hgsc.bcm.edu	37	19	5831871	5831871	+	Silent	SNP	C	C	T	rs141754965		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	FUT6-90	NM_001040701	exon2	c.G708A	p.T236T	GGACAGCGTCTCC	.	663.0	282.0	325.0	1.0	C|1.000;T|0.000	Atlas-SNP
PNPLA6	10908	hgsc.bcm.edu	37	19	7605851	7605851	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PNPLA6-47	NM_001166111	exon9	c.C865T	p.R289W	GCGGCCCGGGACT	.	203.0	14.0	40.0	0.0	.	Atlas-SNP
FBN3	84467	hgsc.bcm.edu	37	19	8206917	8206917	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	FBN3-100	NM_032447	exon6	c.C646T	p.R216C	AGGCACGGCCCAC	.	163.0	50.0	99.0	0.0	.	Atlas-SNP
MYO1F	4542	hgsc.bcm.edu	37	19	8587291	8587291	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	MYO1F-93	NM_012335	exon27	c.G3190A	p.V1064M	CGTTCACGTTGAA	.	259.0	13.0	91.0	0.0	.	Atlas-SNP
ICAM1	3383	hgsc.bcm.edu	37	19	10394443	10394443	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ICAM1-91	NM_000201	exon3	c.C618A	p.P206P	GGCCCCCTACCAG	.	100.0	39.0	57.0	0.0	.	Atlas-SNP
LPHN1	22859	hgsc.bcm.edu	37	19	14272167	14272167	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	LPHN1-523	NM_014921	exon6	c.G1467A	p.Q489Q	GCCCTGCTGGGTG	.	142.0	67.0	34.0	0.0	.	Atlas-SNP
CD97	976	hgsc.bcm.edu	37	19	14515325	14515325	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	CD97-570	NM_001025160	exon12	c.G1433A	p.C478Y	GCCAATGCAGCCA	.	261.0	54.0	101.0	0.0	.	Atlas-SNP
EMR2	30817	hgsc.bcm.edu	37	19	14854448	14854448	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	EMR2-524	NM_001271052	exon17	c.T2158C	p.Y720H	GGCAGTACACCAG	.	454.0	87.0	245.0	0.0	.	Atlas-SNP
AKAP8	10270	hgsc.bcm.edu	37	19	15484604	15484604	+	Missense_Mutation	SNP	G	G	A	rs140271912		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	AKAP8-290	NM_005858	exon4	c.C364T	p.R122W	TCTCCCGGTCCTG	.	78.0	35.0	37.0	0.0	G|1.000;A|0.000	Atlas-SNP
TMEM161A	54929	hgsc.bcm.edu	37	19	19243492	19243492	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	TMEM161A-154	NM_017814	exon4	c.G260T	p.C87F	AGGGGGCAGGTCT	.	119.0	20.0	59.0	0.0	.	Atlas-SNP
SLC7A10	56301	hgsc.bcm.edu	37	19	33706703	33706703	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SLC7A10-91	NM_019849	exon2	c.G328A	p.V110I	CTGTGACGTAGGC	.	158.0	36.0	85.0	0.0	.	Atlas-SNP
COX6B1	1340	hgsc.bcm.edu	37	19	36145482	36145482	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	COX6B1-226	NM_001863	exon3	c.G116A	p.R39H	TCCACCGCTGTCA	.	301.0	57.0	167.0	0.0	.	Atlas-SNP
ZNF529	57711	hgsc.bcm.edu	37	19	37038306	37038306	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ZNF529-67	NM_001145649	exon6	c.A1154C	p.Q385P	ATTCTCTGATGAC	.	102.0	57.0	49.0	0.0	.	Atlas-SNP
FBXO27	126433	hgsc.bcm.edu	37	19	39521937	39521937	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	FBXO27-227	NM_178820	exon3	c.C388T	p.Q130X	CGTGTTGCACCAT	.	269.0	50.0	142.0	0.0	.	Atlas-SNP
PSG6	5675	hgsc.bcm.edu	37	19	43421937	43421937	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PSG6-92	NM_001031850	exon1	c.C8T	p.P3L	GAGAGGGGTCCCA	.	65.0	5.0	27.0	0.0	.	Atlas-SNP
NKPD1	284353	hgsc.bcm.edu	37	19	45655516	45655516	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	NKPD1-68	NM_198478	exon4	c.G2179A	p.A727T	AGTCGGCGCCCAG	.	165.0	27.0	34.0	0.0	.	Atlas-SNP
GRIN2D	2906	hgsc.bcm.edu	37	19	48918195	48918195	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	GRIN2D-156	NM_000836	exon6	c.C1487T	p.A496V	GGCTGGCGCATAC	.	335.0	136.0	160.0	0.0	.	Atlas-SNP
ZNF160	90338	hgsc.bcm.edu	37	19	53577421	53577421	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ZNF160-90	NM_198893	exon6	c.G243A	p.T81T	TTCCGGCGTTCTT	.	175.0	83.0	85.0	0.0	.	Atlas-SNP
SSC5D	284297	hgsc.bcm.edu	37	19	56029616	56029616	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	.	NM_001144950	exon14	c.C3973A	p.P1325T	CCTCACCCCACAA	.	92.0	14.0	43.0	0.0	.	Atlas-SNP
ZNF486	90649	hgsc.bcm.edu	37	19	20308051	20308052	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ZNF486-47	NM_052852	exon4	c.532_533insA	p.E178fs	.	.	98.0	44.0	87.0	0.0	.	Atlas-Indel
MLL4	8085	hgsc.bcm.edu	37	19	36223002	36223002	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	MLL4-697	NM_014727	exon27	c.5630delT	p.L1877fs	.	.	39.0	10.0	32.0	0.0	.	Atlas-Indel
RYR1	6261	hgsc.bcm.edu	37	19	38939333	38939333	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	RYR1-100	NM_000540	exon11	c.1001delG	p.G334fs	.	.	342.0	136.0	166.0	0.0	.	Atlas-Indel
LIPE	3991	hgsc.bcm.edu	37	19	42914911	42914913	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	AGA	AGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	LIPE-154	NM_005357	exon2	c.966_968del	p.322_323del	.	.	82.0	70.0	50.0	0.0	.	Atlas-Indel
RTN2	6253	hgsc.bcm.edu	37	19	45996512	45996513	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	RTN2-93	NM_005619	exon5	c.939_940insC	p.P313fs	.	.	83.0	40.0	44.0	0.0	.	Atlas-Indel
ZNF211	10520	hgsc.bcm.edu	37	19	58153343	58153345	+	In_Frame_Del	DEL	ATT	ATT	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	ATT	ATT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ZNF211-92	NM_001265599	exon5	c.1461_1463del	p.487_488del	.	.	213.0	104.0	98.0	0.0	.	Atlas-Indel
SCAF1	58506	hgsc.bcm.edu	37	19	50156709	50156711	+	In_Frame_Del	DEL	GGA	GGA	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	GGA	GGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SCAF1-68	NM_021228	exon7	c.3062_3064del	p.1021_1022del	.	.	84.0	17.0	33.0	0.0	.	Pindel
PTOV1	53635	hgsc.bcm.edu	37	19	50360301	50360303	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	AAG	AAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PTOV1-226	NM_017432	exon6	c.627_629del	p.209_210del	.	.	339.0	81.0	163.0	0.0	.	Pindel
MORN1	79906	hgsc.bcm.edu	37	1	2316501	2316501	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	MORN1-92	NM_024848	exon6	c.C453T	p.N151N	GTCACCGTTCCTG	.	69.0	29.0	32.0	0.0	.	Atlas-SNP
ZBTB40	9923	hgsc.bcm.edu	37	1	22852723	22852723	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ZBTB40-91	NM_014870	exon18	c.C3554T	p.P1185L	TGGCCCCGACAGA	.	136.0	125.0	115.0	1.0	.	Atlas-SNP
HPCAL4	51440	hgsc.bcm.edu	37	1	40148354	40148354	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	HPCAL4-90	NM_016257	exon4	c.G430A	p.G144R	TGAGCCCGTCCTG	.	235.0	217.0	210.0	0.0	.	Atlas-SNP
CYP4A22	284541	hgsc.bcm.edu	37	1	47610627	47610627	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	CYP4A22-139	NM_001010969	exon9	c.C1207G	p.R403G	GATGGGCGCTCCT	.	194.0	173.0	206.0	1.0	.	Atlas-SNP
ZNF326	284695	hgsc.bcm.edu	37	1	90487883	90487883	+	Silent	SNP	G	G	A	rs146247512	byfrequency	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ZNF326-91	NM_182976	exon11	c.G1380A	p.A460A	GAAGGCGCGATAT	.	170.0	152.0	197.0	0.0	G|0.999;A|0.001	Atlas-SNP
IGSF3	3321	hgsc.bcm.edu	37	1	117131615	117131615	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	IGSF3-92	NM_001542	exon9	c.C2201T	p.A734V	AGCACCGCAAAGT	.	236.0	219.0	221.0	1.0	.	Atlas-SNP
SPRR2G	6706	hgsc.bcm.edu	37	1	153122484	153122484	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SPRR2G-68	NM_001014291	exon2	c.C103A	p.P35T	GGTAAGGCTCAGG	.	76.0	68.0	73.0	0.0	.	Atlas-SNP
IQGAP3	128239	hgsc.bcm.edu	37	1	156498355	156498355	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	IQGAP3-96	NM_178229	exon36	c.C4619T	p.A1540V	AGCTGAGCAGCAG	.	60.0	51.0	64.0	0.0	.	Atlas-SNP
TDRD5	163589	hgsc.bcm.edu	37	1	179621206	179621206	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	TDRD5-94	NM_001199085	exon13	c.C2034T	p.Y678Y	TTTATACACGACA	.	143.0	127.0	135.0	0.0	.	Atlas-SNP
F13B	2165	hgsc.bcm.edu	37	1	197031011	197031011	+	Silent	SNP	G	G	A	rs142562955		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	F13B-92	NM_001994	exon3	c.C354T	p.C118C	TGAAGCGCAACCA	.	108.0	94.0	89.0	0.0	G|1.000;A|0.000	Atlas-SNP
PCNXL2	80003	hgsc.bcm.edu	37	1	233135059	233135059	+	Missense_Mutation	SNP	G	G	A	rs201746355		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PCNXL2-91	NM_014801	exon31	c.C5395T	p.R1799C	GATTGCGGTTGCG	.	98.0	35.0	113.0	0.0	.	Atlas-SNP
RPL22	6146	hgsc.bcm.edu	37	1	6246838	6246840	+	In_Frame_Del	DEL	TTC	TTC	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	TTC	TTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	RPL22-650	NM_000983	exon4	c.280_282del	p.94_94del	.	.	289.0	191.0	318.0	0.0	.	Atlas-Indel
DPYD	1806	hgsc.bcm.edu	37	1	97771791	97771791	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	DPYD-278	NM_000110	exon17	c.2122delG	p.A708fs	.	.	87.0	70.0	72.0	0.0	.	Atlas-Indel
PBXIP1	57326	hgsc.bcm.edu	37	1	154917581	154917583	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	CTT	CTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PBXIP1-153	NM_020524	exon11	c.2114_2116del	p.705_706del	.	.	87.0	62.0	80.0	0.0	.	Atlas-Indel
KLHDC9	126823	hgsc.bcm.edu	37	1	161068381	161068382	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	KLHDC9-22	NM_152366	exon1	c.55_56del	p.19_19del	.	.	129.0	113.0	72.0	0.0	.	Atlas-Indel
MIA3	375056	hgsc.bcm.edu	37	1	222803533	222803534	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	MIA3-98	NM_198551	exon4	c.2971_2972insA	p.E991fs	.	.	120.0	97.0	141.0	0.0	.	Atlas-Indel
ACBD3	64746	hgsc.bcm.edu	37	1	226352491	226352491	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ACBD3-226	NM_022735	exon3	c.569delG	p.R190fs	.	.	120.0	30.0	126.0	0.0	.	Atlas-Indel
MIB2	142678	hgsc.bcm.edu	37	1	1564067	1564067	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	MIB2-90	NM_001170689	exon15	c.1971delC	p.A657fs	.	.	62.0	18.0	19.0	0.0	.	Pindel
NOP56	10528	hgsc.bcm.edu	37	20	2637510	2637510	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	NOP56-92	NM_006392	exon10	c.A1250T	p.N417I	GAAAGAATCTGGA	.	304.0	138.0	128.0	0.0	.	Atlas-SNP
VSX1	30813	hgsc.bcm.edu	37	20	25052585	25052585	+	Missense_Mutation	SNP	G	G	T	rs149938697	by1000genomes;alternate_allele	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	VSX1-90	NM_001256272	exon5	c.C878A	p.P293Q	CACCACGGGGTCT	.	166.0	86.0	79.0	0.0	G|0.998;A|0.002	Atlas-SNP
NELFCD	51497	hgsc.bcm.edu	37	20	57568155	57568155	+	Silent	SNP	G	G	A	rs141996345	byfrequency	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	.	NM_198976	exon11	c.G1386A	p.A462A	CCTGGCGTTGCTG	.	639.0	152.0	315.0	0.0	G|0.999;A|0.001	Atlas-SNP
PHACTR3	116154	hgsc.bcm.edu	37	20	58342325	58342325	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PHACTR3-93	NM_080672	exon5	c.C626A	p.A209D	CCTTAGCTGGGGC	.	357.0	23.0	170.0	0.0	.	Atlas-SNP
KIF3B	9371	hgsc.bcm.edu	37	20	30914608	30914609	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	KIF3B-517	NM_004798	exon6	c.1783_1784insA	p.E595fs	.	.	49.0	14.0	22.0	0.0	.	Atlas-Indel
TOP1	7150	hgsc.bcm.edu	37	20	39713140	39713141	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	TOP1-1148	NM_003286	exon8	c.546_547insA	p.D182fs	.	.	76.0	24.0	68.0	0.0	.	Atlas-Indel
GSS	2937	hgsc.bcm.edu	37	20	33519853	33519855	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	CTT	CTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	GSS-93	NM_000178	exon10	c.917_919del	p.306_307del	.	.	549.0	105.0	250.0	0.0	.	Pindel
TIAM1	7074	hgsc.bcm.edu	37	21	32638636	32638636	+	Missense_Mutation	SNP	G	G	A	rs202148756		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	TIAM1-724	NM_003253	exon5	c.C653T	p.A218V	GGACTCGCCCGCG	.	145.0	72.0	70.0	0.0	G|0.999;A|0.001	Atlas-SNP
BACH1	571	hgsc.bcm.edu	37	21	30701923	30701925	+	In_Frame_Del	DEL	GAA	GAA	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	GAA	GAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	BACH1-92	NM_001186	exon4	c.1684_1686del	p.562_562del	.	.	226.0	107.0	98.0	0.0	.	Atlas-Indel
TTC28	23331	hgsc.bcm.edu	37	22	28501523	28501523	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	.	NM_001145418	exon8	c.G3051A	p.L1017L	GTACTGCAGGGCT	.	185.0	174.0	172.0	1.0	.	Atlas-SNP
CHEK2	11200	hgsc.bcm.edu	37	22	29130427	29130427	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	CHEK2-1515	NM_145862	exon2	c.C283T	p.R95X	ATAATCGAGCCCA	.	49.0	47.0	61.0	0.0	.	Atlas-SNP
CRELD2	79174	hgsc.bcm.edu	37	22	50319196	50319196	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	CRELD2-90	NM_024324	exon9	c.G1000A	p.A334T	CCGCCGGCAGAGG	.	94.0	88.0	68.0	0.0	.	Atlas-SNP
PLXNB2	23654	hgsc.bcm.edu	37	22	50722344	50722344	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PLXNB2-211	NM_012401	exon14	c.C2339T	p.A780V	CACCACGCACACC	.	88.0	75.0	34.0	0.0	.	Atlas-SNP
PLXNB2	23654	hgsc.bcm.edu	37	22	50722601	50722601	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PLXNB2-211	NM_012401	exon13	c.C2223T	p.Y741Y	CTTGACGTAGAGG	.	71.0	65.0	48.0	0.0	.	Atlas-SNP
ZNRF3	84133	hgsc.bcm.edu	37	22	29445345	29445345	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ZNRF3-69	NM_032173	exon8	c.875delA	p.N292fs	.	.	163.0	146.0	116.0	0.0	.	Atlas-Indel
GRHL1	29841	hgsc.bcm.edu	37	2	10105471	10105471	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	GRHL1-92	NM_198182	exon8	c.C1071T	p.N357N	GTATAACGCCATT	.	73.0	67.0	74.0	0.0	.	Atlas-SNP
LOXL3	84695	hgsc.bcm.edu	37	2	74779681	74779681	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	LOXL3-226	NM_032603	exon2	c.G81A	p.P27P	AGGGGACGGAGAC	.	175.0	16.0	142.0	0.0	.	Atlas-SNP
CAPG	822	hgsc.bcm.edu	37	2	85628351	85628351	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	CAPG-204	NM_001747	exon5	c.C453T	p.T151T	CCGCTCGGTGGCA	.	183.0	161.0	195.0	0.0	.	Atlas-SNP
MAP3K19	80122	hgsc.bcm.edu	37	2	135738728	135738728	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	.	NM_025052	exon9	c.A3583G	p.M1195V	TTGGCATGAGCAT	.	56.0	51.0	47.0	0.0	.	Atlas-SNP
SLC40A1	30061	hgsc.bcm.edu	37	2	190430180	190430180	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SLC40A1-91	NM_014585	exon6	c.C660T	p.Y220Y	CAGAACGTACTCC	.	130.0	106.0	114.0	0.0	.	Atlas-SNP
C1D	10438	hgsc.bcm.edu	37	2	68270087	68270088	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	C1D-186	NM_006333	exon5	c.360_361insA	p.N120fs	.	.	104.0	35.0	111.0	0.0	.	Atlas-Indel
DNAJB3	414061	hgsc.bcm.edu	37	2	234652188	234652188	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	.	NM_001001394	exon1	c.376delT	p.S126fs	.	.	74.0	61.0	115.0	0.0	.	Atlas-Indel
ERCC3	2071	hgsc.bcm.edu	37	2	128046943	128046944	+	In_Frame_Ins	INS	-	-	TCT	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ERCC3-723	NM_000122	exon6	c.792_793insAGA	p.E264delinsEE	.	.	306.0	80.0	247.0	0.0	.	Pindel
SETD5	55209	hgsc.bcm.edu	37	3	9516182	9516182	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SETD5-70	NM_001080517	exon21	c.A3547T	p.K1183X	ATCCCCAAGGTCC	.	105.0	86.0	70.0	0.0	.	Atlas-SNP
XIRP1	165904	hgsc.bcm.edu	37	3	39230192	39230192	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	XIRP1-158	NM_194293	exon2	c.G745A	p.A249T	GGATGGCGCCCTC	.	57.0	45.0	47.0	0.0	.	Atlas-SNP
EPHB3	2049	hgsc.bcm.edu	37	3	184299402	184299402	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	EPHB3-1455	NM_004443	exon16	c.C2989A	p.Q997K	CCTGTGCAGGTCT	.	124.0	107.0	130.0	0.0	.	Atlas-SNP
FAM43A	131583	hgsc.bcm.edu	37	3	194407766	194407766	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	FAM43A-90	NM_153690	exon1	c.A211G	p.T71A	ACTTACACCGTGC	.	351.0	310.0	279.0	1.0	.	Atlas-SNP
STAC	6769	hgsc.bcm.edu	37	3	36570404	36570406	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	AGA	AGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	STAC-94	NM_003149	exon10	c.1036_1038del	p.346_346del	.	.	78.0	75.0	85.0	0.0	.	Atlas-Indel
MLH1	4292	hgsc.bcm.edu	37	3	37042447	37042449	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	AAG	AAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	MLH1-2559	NM_000249	exon3	c.208_210del	p.70_70del	.	.	61.0	51.0	65.0	0.0	.	Atlas-Indel
PDZRN3	23024	hgsc.bcm.edu	37	3	73432786	73432788	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	CTC	CTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PDZRN3-232	NM_015009	exon10	c.2930_2932del	p.977_978del	.	.	94.0	82.0	84.0	0.0	.	Atlas-Indel
COL6A5	256076	hgsc.bcm.edu	37	3	130159651	130159651	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	.	NM_153264	exon35	c.6468delA	p.P2156fs	.	.	77.0	33.0	53.0	0.0	.	Atlas-Indel
SLC35G2	80723	hgsc.bcm.edu	37	3	136573486	136573486	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	.	NM_001097599	exon2	c.183delG	p.M61fs	.	.	52.0	45.0	48.0	0.0	.	Atlas-Indel
FXR1	8087	hgsc.bcm.edu	37	3	180666228	180666228	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	FXR1-153	NM_005087	exon5	c.363delC	p.V121fs	.	.	74.0	60.0	53.0	0.0	.	Atlas-Indel
RBM5	10181	hgsc.bcm.edu	37	3	50155887	50155888	+	Frame_Shift_Ins	INS	-	-	GA	rs112672304		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	RBM5-278	NM_005778	exon25	c.2446_2447insGA	p.X816delinsX	.	.	59.0	13.0	71.0	0.0	-|0.500;GA|0.500	Pindel
NELFA	7469	hgsc.bcm.edu	37	4	1991593	1991593	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	.	NM_005663	exon3	c.G419A	p.G140D	CACTCACCCACTG	.	237.0	107.0	109.0	0.0	.	Atlas-SNP
STIM2	57620	hgsc.bcm.edu	37	4	27000929	27000929	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	STIM2-91	NM_001169117	exon5	c.G585A	p.Q195Q	ACTTCAGCTCAAG	.	144.0	62.0	59.0	0.0	.	Atlas-SNP
UGT2B15	7366	hgsc.bcm.edu	37	4	69536320	69536320	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	UGT2B15-46	NM_001076	exon1	c.C17T	p.T6M	ACTGACGTCCATT	.	133.0	8.0	60.0	0.0	.	Atlas-SNP
AP1AR	55435	hgsc.bcm.edu	37	4	113189441	113189441	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	AP1AR-90	NM_018569	exon10	c.A785G	p.N262S	GGGAAAATGATTT	.	213.0	92.0	133.0	0.0	.	Atlas-SNP
ANK2	287	hgsc.bcm.edu	37	4	114276759	114276759	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ANK2-583	NM_001148	exon38	c.G6985A	p.G2329S	TGCACAGGCAGCT	.	154.0	70.0	82.0	0.0	.	Atlas-SNP
ZNF330	27309	hgsc.bcm.edu	37	4	142143548	142143548	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ZNF330-90	NM_014487	exon2	c.C23T	p.A8V	CTGGTGCGAGGAA	.	333.0	160.0	164.0	0.0	.	Atlas-SNP
ACSL1	2180	hgsc.bcm.edu	37	4	185684335	185684335	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ACSL1-92	NM_001995	exon16	c.G1507A	p.E503K	CGCCCTCGGCAGC	.	72.0	66.0	72.0	0.0	.	Atlas-SNP
HERC6	55008	hgsc.bcm.edu	37	4	89311864	89311865	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	HERC6-658	NM_001165136	exon4	c.497_498insC	p.F166fs	.	.	166.0	77.0	80.0	0.0	.	Atlas-Indel
UNC5C	8633	hgsc.bcm.edu	37	4	96140294	96140294	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	UNC5C-94	NM_003728	exon9	c.1472delA	p.Q491fs	.	.	446.0	214.0	149.0	0.0	.	Atlas-Indel
FAT4	79633	hgsc.bcm.edu	37	4	126369791	126369791	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	FAT4-108	NM_024582	exon9	c.7619delT	p.V2540fs	.	.	259.0	115.0	105.0	0.0	.	Atlas-Indel
FGA	2243	hgsc.bcm.edu	37	4	155505988	155505988	+	Splice_Site	DEL	A	A	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	FGA-93	NM_000508	exon7	c.1892-2T>-	.	.	.	28.0	11.0	16.0	0.0	.	Atlas-Indel
TRMT44	152992	hgsc.bcm.edu	37	4	8470030	8470032	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	AAG	AAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	.	NM_152544	exon9	c.1883_1885del	p.628_629del	.	.	232.0	63.0	131.0	0.0	.	Pindel
TLR6	10333	hgsc.bcm.edu	37	4	38830935	38830935	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	TLR6-524	NM_006068	exon2	c.161delC	p.T54fs	.	.	170.0	55.0	79.0	0.0	.	Pindel
NAA15	80155	hgsc.bcm.edu	37	4	140291458	140291459	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	NAA15-92	NM_057175	exon15	c.1846_1847del	p.616_616del	.	.	212.0	61.0	126.0	0.0	.	Pindel
AGXT2	64902	hgsc.bcm.edu	37	5	34998917	34998917	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	AGXT2-94	NM_031900	exon14	c.G1452A	p.A484A	TGAGGGCGCAATG	.	100.0	40.0	65.0	0.0	.	Atlas-SNP
ANXA2R	389289	hgsc.bcm.edu	37	5	43039623	43039623	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	.	NM_001014279	exon1	c.G526A	p.A176T	AGAACGCGGCAAA	.	219.0	119.0	112.0	0.0	.	Atlas-SNP
SPATA9	83890	hgsc.bcm.edu	37	5	94994526	94994526	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SPATA9-90	NM_031952	exon5	c.G566T	p.C189F	TTTCTACAATTTT	.	62.0	29.0	44.0	0.0	.	Atlas-SNP
MCC	4163	hgsc.bcm.edu	37	5	112720886	112720886	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	MCC-69	NM_001085377	exon2	c.G194A	p.R65H	AGCTGGCGACAGA	.	260.0	108.0	144.0	0.0	.	Atlas-SNP
FBN2	2201	hgsc.bcm.edu	37	5	127728872	127728872	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	FBN2-146	NM_001999	exon10	c.C1421T	p.A474V	ACACCGGCTCCCC	.	126.0	61.0	61.0	0.0	.	Atlas-SNP
TENM2	57451	hgsc.bcm.edu	37	5	167674716	167674716	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	.	NM_001122679	exon27	c.G6745A	p.G2249R	AGACTCGGGGATG	.	190.0	36.0	102.0	0.0	.	Atlas-SNP
CLTB	1212	hgsc.bcm.edu	37	5	175824972	175824972	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	CLTB-90	NM_007097	exon3	c.G311A	p.R104H	CACTTGCGGATGC	.	239.0	39.0	122.0	0.0	.	Atlas-SNP
NSD1	64324	hgsc.bcm.edu	37	5	176687121	176687121	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	NSD1-188	NM_022455	exon14	c.C5098T	p.R1700X	GGCTGCCGAAATC	.	205.0	28.0	97.0	0.0	.	Atlas-SNP
RASGEF1C	255426	hgsc.bcm.edu	37	5	179564923	179564923	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	RASGEF1C-228	NM_175062	exon2	c.G130T	p.E44X	GTGTTTCCAGGGA	.	388.0	66.0	170.0	0.0	.	Atlas-SNP
NUP155	9631	hgsc.bcm.edu	37	5	37348627	37348628	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	NUP155-205	NM_153485	exon9	c.975_976del	p.325_326del	.	.	680.0	313.0	382.0	0.0	.	Atlas-Indel
OSMR	9180	hgsc.bcm.edu	37	5	38923329	38923329	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	OSMR-496	NM_003999	exon13	c.1842delG	p.E614fs	.	.	60.0	11.0	37.0	0.0	.	Atlas-Indel
CWC27	10283	hgsc.bcm.edu	37	5	64100133	64100134	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	CWC27-90	NM_005869	exon10	c.858_859insA	p.A286fs	.	.	69.0	34.0	28.0	0.0	.	Atlas-Indel
SLCO6A1	133482	hgsc.bcm.edu	37	5	101755728	101755728	+	Splice_Site	DEL	A	A	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SLCO6A1-96	NM_173488	exon9	c.1277-2T>-	.	.	.	88.0	43.0	65.0	0.0	.	Atlas-Indel
AQPEP	0	hgsc.bcm.edu	37	5	115335468	115335468	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	.	NM_173800	exon7	c.1383delC	p.I461fs	.	.	199.0	92.0	102.0	0.0	.	Atlas-Indel
KIF3A	11127	hgsc.bcm.edu	37	5	132056409	132056409	+	Splice_Site	DEL	A	A	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	KIF3A-91	NM_007054	exon6	c.511-2T>-	.	.	.	66.0	31.0	56.0	0.0	.	Atlas-Indel
RAD50	10111	hgsc.bcm.edu	37	5	131931452	131931452	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	RAD50-229	NM_005732	exon13	c.2156delT	p.L719fs	.	.	73.0	15.0	39.0	0.0	.	Pindel
KLHL31	401265	hgsc.bcm.edu	37	6	53519456	53519456	+	Silent	SNP	C	C	A	rs114605120	alternate_allele	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	KLHL31-23	NM_001003760	exon2	c.G615T	p.S205S	CTGATCCGATTCT	.	56.0	48.0	71.0	0.0	C|0.999;T|0.001	Atlas-SNP
SYNE1	23345	hgsc.bcm.edu	37	6	152751308	152751308	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SYNE1-607	NM_033071	exon36	c.C4748T	p.A1583V	GGAACAGCAAGTT	.	119.0	109.0	137.0	0.0	.	Atlas-SNP
EHMT2	10919	hgsc.bcm.edu	37	6	31857309	31857311	+	In_Frame_Del	DEL	TCT	TCT	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	TCT	TCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	EHMT2-91	NM_006709	exon8	c.934_936del	p.312_312del	.	.	50.0	10.0	74.0	0.0	.	Atlas-Indel
DAXX	1616	hgsc.bcm.edu	37	6	33288228	33288232	+	Frame_Shift_Del	DEL	TCTTT	TCTTT	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	TCTTT	TCTTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	DAXX-731	NM_001254717	exon3	c.952_956del	p.318_319del	.	.	48.0	41.0	61.0	0.0	.	Atlas-Indel
PHACTR2	9749	hgsc.bcm.edu	37	6	144086413	144086414	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PHACTR2-92	NM_001100164	exon6	c.710_711insA	p.S237fs	.	.	25.0	20.0	24.0	0.0	.	Atlas-Indel
ZPBP	11055	hgsc.bcm.edu	37	7	50129273	50129273	+	Missense_Mutation	SNP	G	G	A	rs200921057	alternate_allele	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ZPBP-90	NM_001159878	exon2	c.C160T	p.R54C	TCAAGCGAAAAGC	.	202.0	86.0	122.0	0.0	G|0.999;T|0.001	Atlas-SNP
GTF2IRD1	9569	hgsc.bcm.edu	37	7	73944069	73944069	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	GTF2IRD1-94	NM_005685	exon9	c.G1096A	p.A366T	GCGGAAGCCCTGG	.	112.0	24.0	50.0	0.0	.	Atlas-SNP
ACHE	43	hgsc.bcm.edu	37	7	100491127	100491127	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ACHE-92	NM_000665	exon2	c.C727T	p.H243Y	GCAGGTGCATGCC	.	46.0	26.0	6.0	0.0	.	Atlas-SNP
PPP1R3A	5506	hgsc.bcm.edu	37	7	113519565	113519565	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PPP1R3A-832	NM_002711	exon4	c.G1582T	p.E528X	GTTTTTCATTAAC	.	61.0	10.0	53.0	0.0	.	Atlas-SNP
CPA1	1357	hgsc.bcm.edu	37	7	130020366	130020366	+	Missense_Mutation	SNP	G	G	A	rs145988366	byfrequency	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	CPA1-91	NM_001868	exon1	c.G5A	p.R2Q	GCATGCGGGGGTT	.	53.0	34.0	31.0	0.0	G|1.000;A|0.000	Atlas-SNP
EXOC4	60412	hgsc.bcm.edu	37	7	132959896	132959896	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	EXOC4-159	NM_001037126	exon2	c.C246T	p.R82R	AGAGCGCATCACT	.	362.0	148.0	159.0	0.0	.	Atlas-SNP
PARP12	64761	hgsc.bcm.edu	37	7	139726084	139726084	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PARP12-525	NM_022750	exon11	c.G1693A	p.G565S	TGGTGCCGTGGAA	.	167.0	90.0	86.0	0.0	.	Atlas-SNP
ICA1	3382	hgsc.bcm.edu	37	7	8198250	8198251	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ICA1-515	NM_022307	exon7	c.612_613insA	p.N204fs	.	.	134.0	25.0	63.0	0.0	.	Atlas-Indel
TMEM196	256130	hgsc.bcm.edu	37	7	19769017	19769017	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	TMEM196-22	NM_152774	exon2	c.193delT	p.S65fs	.	.	93.0	40.0	42.0	0.0	.	Atlas-Indel
TMEM60	85025	hgsc.bcm.edu	37	7	77423460	77423460	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	TMEM60-90	NM_032936	exon2	c.232delG	p.A78fs	.	.	126.0	51.0	61.0	0.0	.	Atlas-Indel
TMEM130	222865	hgsc.bcm.edu	37	7	98452922	98452923	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	TMEM130-91	NM_001134451	exon4	c.438_439insT	p.L146fs	.	.	256.0	41.0	145.0	0.0	.	Atlas-Indel
THAP5	168451	hgsc.bcm.edu	37	7	108205526	108205526	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	THAP5-68	NM_182529	exon3	c.172delT	p.S58fs	.	.	67.0	25.0	38.0	0.0	.	Atlas-Indel
VWDE	221806	hgsc.bcm.edu	37	7	12384098	12384098	+	Splice_Site	DEL	A	A	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	VWDE-68	NM_001135924	exon21	c.3887-2T>-	.	.	.	154.0	37.0	75.0	0.0	.	Pindel
TNS3	64759	hgsc.bcm.edu	37	7	47385878	47385878	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	TNS3-94	NM_022748	exon18	c.2359delC	p.Q787fs	.	.	171.0	53.0	74.0	0.0	.	Pindel
MYBL1	4603	hgsc.bcm.edu	37	8	67511292	67511294	+	In_Frame_Del	DEL	TCT	TCT	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	TCT	TCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	MYBL1-395	NM_001144755	exon4	c.283_285del	p.95_95del	.	.	46.0	34.0	37.0	0.0	.	Atlas-Indel
ST18	9705	hgsc.bcm.edu	37	8	53062482	53062482	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ST18-95	NM_014682	exon16	c.1863delT	p.N621fs	.	.	174.0	74.0	140.0	0.0	.	Pindel
NUDT2	318	hgsc.bcm.edu	37	9	34339072	34339072	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	NUDT2-90	NM_001244390	exon2	c.G35T	p.R12L	TCTTCCGAAGATG	.	100.0	6.0	82.0	0.0	.	Atlas-SNP
CCIN	881	hgsc.bcm.edu	37	9	36170452	36170452	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	CCIN-92	NM_005893	exon1	c.C953A	p.A318E	GGGCAGCAGCACT	.	74.0	4.0	66.0	0.0	.	Atlas-SNP
C9orf41	138199	hgsc.bcm.edu	37	9	77613553	77613553	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	C9orf41-92	NM_152420	exon5	c.A871G	p.M291V	CTGTCATAGAAAA	.	240.0	108.0	138.0	0.0	.	Atlas-SNP
SECISBP2	79048	hgsc.bcm.edu	37	9	91949587	91949587	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SECISBP2-93	NM_024077	exon7	c.C1031T	p.A344V	CTGAAGCTTTATC	.	117.0	43.0	81.0	0.0	.	Atlas-SNP
GAPVD1	26130	hgsc.bcm.edu	37	9	128069806	128069806	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	GAPVD1-93	NM_015635	exon5	c.T1231C	p.Y411H	ATAACCTACAGTC	.	82.0	6.0	59.0	0.0	.	Atlas-SNP
KCNT1	57582	hgsc.bcm.edu	37	9	138669186	138669186	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	KCNT1-137	NM_020822	exon21	c.C2352T	p.G784G	CCAGGGCTGCAAG	.	464.0	42.0	230.0	0.0	.	Atlas-SNP
TMEM203	94107	hgsc.bcm.edu	37	9	140099815	140099815	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	TMEM203-22	NM_053045	exon1	c.G52T	p.E18X	AGATCTCGAAGGT	.	604.0	184.0	172.0	0.0	.	Atlas-SNP
CDK5RAP2	55755	hgsc.bcm.edu	37	9	123290085	123290085	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	CDK5RAP2-229	NM_001011649	exon10	c.999delG	p.K333fs	.	.	52.0	26.0	28.0	0.0	.	Atlas-Indel
NR5A1	2516	hgsc.bcm.edu	37	9	127253373	127253375	+	In_Frame_Del	DEL	GAT	GAT	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	GAT	GAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	NR5A1-186	NM_004959	exon6	c.1124_1126del	p.375_376del	.	.	240.0	106.0	97.0	0.0	.	Atlas-Indel
GOLGA2	2801	hgsc.bcm.edu	37	9	131022875	131022875	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	GOLGA2-91	NM_004486	exon17	c.1547delA	p.E516fs	.	.	122.0	19.0	30.0	0.0	.	Atlas-Indel
C9orf96	169436	hgsc.bcm.edu	37	9	136262309	136262311	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	CTT	CTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	C9orf96-334	NM_153710	exon10	c.884_886del	p.295_296del	.	.	255.0	67.0	121.0	0.0	.	Pindel
RPA4	29935	hgsc.bcm.edu	37	X	96139817	96139817	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	RPA4-227	NM_013347	exon1	c.A508G	p.K170E	CTGGATAAAGCCC	.	179.0	69.0	83.0	0.0	.	Atlas-SNP
HNRNPH2	3188	hgsc.bcm.edu	37	X	100667308	100667308	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	HNRNPH2-130	NM_019597	exon2	c.G332A	p.G111D	ACGATGGCTTCGT	.	357.0	328.0	184.0	0.0	.	Atlas-SNP
CAPN6	827	hgsc.bcm.edu	37	X	110497633	110497633	+	Splice_Site	SNP	T	T	C	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	CAPN6-195	NM_014289	exon4	c.166-2A>G	.	ATGTCCTATGAAT	.	142.0	80.0	62.0	0.0	.	Atlas-SNP
KIAA1210	57481	hgsc.bcm.edu	37	X	118215302	118215302	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	KIAA1210-67	NM_020721	exon14	c.T5120A	p.I1707N	TGCGTGATTTCTG	.	81.0	78.0	34.0	0.0	.	Atlas-SNP
GPC4	2239	hgsc.bcm.edu	37	X	132437297	132437297	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	GPC4-226	NM_001448	exon8	c.C1365T	p.S455S	TGGTTTGCTGGTG	.	140.0	126.0	71.0	0.0	.	Atlas-SNP
MAGEC1	9947	hgsc.bcm.edu	37	X	140994548	140994548	+	Missense_Mutation	SNP	A	A	G	rs58117541	bycluster;alternate_allele	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	MAGEC1-133	NM_005462	exon4	c.A1358G	p.Y453C	TCTCCTACACTTT	.	87.0	82.0	39.0	0.0	A|0.500;C|0.500	Atlas-SNP
HCFC1	3054	hgsc.bcm.edu	37	X	153225825	153225825	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	HCFC1-132	NM_005334	exon7	c.G945T	p.E315D	GTTGTCCTCCAGT	.	169.0	154.0	78.0	0.0	.	Atlas-SNP
SMC1A	8243	hgsc.bcm.edu	37	X	53438821	53438823	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	CTT	CTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SMC1A-232	NM_006306	exon7	c.1143_1145del	p.381_382del	.	.	123.0	109.0	63.0	0.0	.	Atlas-Indel
SPANXB1	728695	hgsc.bcm.edu	37	X	140085641	140085641	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	.	NM_032461	exon2	c.135delT	p.P45fs	.	.	394.0	232.0	225.0	0.0	.	Atlas-Indel
PLXNB3	5365	hgsc.bcm.edu	37	X	153042691	153042691	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PLXNB3-130	NM_001163257	exon31	c.5024delA	p.E1675fs	.	.	107.0	52.0	45.0	0.0	.	Pindel
