Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Algorithm
NRG3	10718	hgsc.bcm.edu	37	10	84745227	84745227	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	NRG3-522	NM_001165973	exon11	c.G1366A	p.A456T	GAACTGGCCAGCG	.	96.0	43.0	71.0	0.0	.	Atlas-SNP
PIK3AP1	118788	hgsc.bcm.edu	37	10	98386618	98386618	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	PIK3AP1-519	NM_152309	exon10	c.C1516G	p.L506V	GACCAAGATGGCA	.	187.0	87.0	135.0	0.0	.	Atlas-SNP
GPAM	57678	hgsc.bcm.edu	37	10	113924340	113924340	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	GPAM-92	NM_020918	exon13	c.C1250T	p.P417L	GACACCGGTTTCT	.	100.0	48.0	53.0	0.0	.	Atlas-SNP
PNLIP	5406	hgsc.bcm.edu	37	10	118318731	118318731	+	Silent	SNP	T	T	G	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	PNLIP-92	NM_000936	exon10	c.T996G	p.P332P	ATATCCTGGGAAA	.	134.0	62.0	96.0	0.0	.	Atlas-SNP
ENO4	387712	hgsc.bcm.edu	37	10	118633606	118633606	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	ENO4-69	NM_001242699	exon10	c.T1235C	p.V412A	ATGAAGTGATCAT	.	125.0	51.0	109.0	0.0	.	Atlas-SNP
MUC5B	727897	hgsc.bcm.edu	37	11	1253980	1253980	+	Missense_Mutation	SNP	A	A	G	rs202127660		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	.	NM_002458	exon17	c.A2045G	p.D682G	TCAGCGACTGGAG	.	102.0	10.0	25.0	0.0	.	Atlas-SNP
BRSK2	9024	hgsc.bcm.edu	37	11	1471882	1471882	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	BRSK2-333	NM_001256629	exon14	c.G1353A	p.T451T	CCACACGCCAAAG	.	80.0	67.0	10.0	0.0	.	Atlas-SNP
SLCO1B7	338821	hgsc.bcm.edu	37	12	21196449	21196449	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	.	NM_001009562	exon6	c.T768C	p.D256D	TAATGATAAAAGG	.	27.0	11.0	20.0	0.0	.	Atlas-SNP
TMEM19	55266	hgsc.bcm.edu	37	12	72091182	72091182	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	TMEM19-90	NM_018279	exon4	c.G505T	p.A169S	TACTCCGCTTCCT	.	72.0	4.0	58.0	0.0	.	Atlas-SNP
PCDH20	64881	hgsc.bcm.edu	37	13	61986775	61986775	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	PCDH20-581	NM_022843	exon2	c.A1457G	p.E486G	AAATATTCATTAT	.	177.0	91.0	154.0	0.0	.	Atlas-SNP
KLF5	688	hgsc.bcm.edu	37	13	73636282	73636282	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	KLF5-155	NM_001730	exon2	c.C545T	p.P182L	CGGCCCCGACCCA	.	77.0	38.0	61.0	0.0	.	Atlas-SNP
INSM2	84684	hgsc.bcm.edu	37	14	36004341	36004341	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	INSM2-226	NM_032594	exon1	c.G883C	p.E295Q	TGCCCTGAGTGCG	.	92.0	25.0	23.0	0.0	.	Atlas-SNP
ELMSAN1	91748	hgsc.bcm.edu	37	14	74191989	74191989	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	.	NM_001043318	exon9	c.2561delT	p.L854fs	.	.	68.0	57.0	110.0	0.0	.	Atlas-Indel
ADAMTS7	11173	hgsc.bcm.edu	37	15	79058090	79058090	+	Missense_Mutation	SNP	A	A	G	rs2929158	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	ADAMTS7-226	NM_014272	exon19	c.T4163C	p.V1388A	TCAGGGACTCTGT	.	97.0	6.0	14.0	0.0	A|0.898;G|0.102	Atlas-SNP
PDE8A	5151	hgsc.bcm.edu	37	15	85656649	85656650	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	PDE8A-94	NM_002605	exon13	c.1155_1156del	p.385_386del	.	.	153.0	36.0	113.0	0.0	.	Atlas-Indel
ATXN2L	11273	hgsc.bcm.edu	37	16	28844676	28844676	+	Splice_Site	SNP	G	G	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	ATXN2L-92	NM_145714	exon14	c.1955+1G>T	.	TGCTGAGTGAGTG	.	89.0	43.0	79.0	0.0	.	Atlas-SNP
OR1D5	8386	hgsc.bcm.edu	37	17	2966182	2966182	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	.	NM_014566	exon1	c.C720A	p.T240T	GGCACAGGTAGAG	.	684.0	268.0	615.0	0.0	.	Atlas-SNP
MYO1F	4542	hgsc.bcm.edu	37	19	8595175	8595175	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	MYO1F-93	NM_012335	exon21	c.G2233T	p.G745W	CCAGCCCCAGGTA	.	167.0	38.0	144.0	0.0	.	Atlas-SNP
OR7A10	390892	hgsc.bcm.edu	37	19	14951843	14951843	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	OR7A10-68	NM_001005190	exon1	c.C847A	p.P283T	GCATGGGGGTGAC	.	140.0	66.0	92.0	0.0	.	Atlas-SNP
ZNF254	9534	hgsc.bcm.edu	37	19	24310744	24310744	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	ZNF254-90	NM_203282	exon4	c.G1942A	p.D648N	ACCACAGATAAGA	.	16.0	7.0	8.0	0.0	.	Atlas-SNP
CATSPERG	57828	hgsc.bcm.edu	37	19	38845375	38845375	+	Silent	SNP	C	C	T	rs114967522		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	CATSPERG-92	NM_021185	exon9	c.C1023T	p.S341S	GGCCAGCGAGTGC	.	182.0	82.0	119.0	0.0	C|0.999;T|0.001	Atlas-SNP
TRPM4	54795	hgsc.bcm.edu	37	19	49699903	49699903	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	TRPM4-91	NM_017636	exon17	c.A2417G	p.Q806R	ATTTCCAGCCGGC	.	55.0	26.0	24.0	0.0	.	Atlas-SNP
SHANK1	50944	hgsc.bcm.edu	37	19	51172454	51172454	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	SHANK1-153	NM_016148	exon22	c.C2763A	p.P921P	TGGCGGGGGAATG	.	40.0	18.0	26.0	0.0	.	Atlas-SNP
ZNF845	91664	hgsc.bcm.edu	37	19	53856661	53856661	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	.	NM_138374	exon4	c.A2733G	p.G911G	TACTGGAGAGAAA	.	111.0	7.0	98.0	0.0	.	Atlas-SNP
DPRX	503834	hgsc.bcm.edu	37	19	54140161	54140161	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	DPRX-90	NM_001012728	exon3	c.C495G	p.P165P	CTACCCCATTTTG	.	166.0	71.0	130.0	0.0	.	Atlas-SNP
TRIM63	84676	hgsc.bcm.edu	37	1	26386772	26386772	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	TRIM63-226	NM_032588	exon4	c.C582A	p.S194S	TCGACGGGAATCC	.	45.0	4.0	63.0	0.0	.	Atlas-SNP
FLG	2312	hgsc.bcm.edu	37	1	152280081	152280081	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	FLG-106	NM_002016	exon3	c.C7281A	p.A2427A	TCCATGGGCGGAC	.	482.0	117.0	309.0	0.0	.	Atlas-SNP
OBSCN	84033	hgsc.bcm.edu	37	1	228526051	228526051	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	OBSCN-403	NM_001271223	exon79	c.G19933A	p.D6645N	TCTGAAGACGAAT	.	55.0	9.0	31.0	0.0	.	Atlas-SNP
IFT52	51098	hgsc.bcm.edu	37	20	42233641	42233641	+	Splice_Site	SNP	G	G	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	IFT52-92	NM_016004	exon6	c.414-1G>T	.	CTTCAAGGGAAAT	.	69.0	31.0	48.0	0.0	.	Atlas-SNP
SYCP2	10388	hgsc.bcm.edu	37	20	58450354	58450354	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	SYCP2-525	NM_014258	exon33	c.C3321A	p.G1107G	TGGACTGCCAGAT	.	69.0	6.0	52.0	0.0	.	Atlas-SNP
RGS19	10287	hgsc.bcm.edu	37	20	62705725	62705725	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	RGS19-227	NM_005873	exon5	c.G234A	p.T78T	ACTTGGCGTGGCA	.	131.0	64.0	26.0	0.0	.	Atlas-SNP
U2AF1	7307	hgsc.bcm.edu	37	21	44524486	44524486	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	U2AF1-90	NM_006758	exon2	c.T71C	p.I24T	GCTCCAATTTTGA	.	125.0	44.0	137.0	0.0	.	Atlas-SNP
COL6A2	1292	hgsc.bcm.edu	37	21	47552201	47552201	+	Missense_Mutation	SNP	C	C	T	rs117725825	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	COL6A2-515	NM_001849	exon28	c.C2795T	p.P932L	GCAGCCCGCGTGG	.	82.0	58.0	6.0	0.0	C|0.998;T|0.002	Atlas-SNP
SEC14L4	284904	hgsc.bcm.edu	37	22	30887672	30887672	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	SEC14L4-91	NM_001161368	exon11	c.G969C	p.K323N	CCCCATCTTGGTC	.	75.0	6.0	104.0	0.0	.	Atlas-SNP
MN1	4330	hgsc.bcm.edu	37	22	28194895	28194900	+	In_Frame_Del	DEL	TGCTGT	TGCTGT	-	rs202212250		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	TGCTGT	TGCTGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	MN1-993	NM_002430	exon1	c.1633_1638del	p.545_546del	.	.	33.0	26.0	8.0	0.0	TGCTGT|0.982;-|0.018	Atlas-Indel
DNAH6	1768	hgsc.bcm.edu	37	2	84771405	84771405	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	DNAH6-69	NM_001370	exon5	c.C711T	p.S237S	TATTAGCCAAAGG	.	146.0	58.0	116.0	0.0	.	Atlas-SNP
ADAMTS9	56999	hgsc.bcm.edu	37	3	64536626	64536626	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	ADAMTS9-230	NM_182920	exon31	c.G4811A	p.R1604H	CTTTCACGGTCCA	.	178.0	101.0	191.0	0.0	.	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	37	3	195508392	195508392	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	MUC4-90	NM_018406	exon2	c.A10059T	p.V3353V	TGTGGATACTGAG	.	691.0	112.0	624.0	1.0	.	Atlas-SNP
CRIPAK	285464	hgsc.bcm.edu	37	4	1388848	1388848	+	Silent	SNP	A	A	C	rs74511366	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	CRIPAK-90	NM_175918	exon1	c.A549C	p.P183P	CGTGCCAACGTGG	.	158.0	35.0	23.0	0.0	A|0.993;C|0.000;G|0.006	Atlas-SNP
TRPC3	7222	hgsc.bcm.edu	37	4	122853648	122853648	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	TRPC3-92	NM_003305	exon1	c.G546T	p.K182N	GGCACCCTTCATC	.	262.0	87.0	218.0	0.0	.	Atlas-SNP
PCDH18	54510	hgsc.bcm.edu	37	4	138452025	138452025	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	PCDH18-185	NM_019035	exon1	c.A1218G	p.K406K	CTGAAGTTTAAAG	.	62.0	15.0	71.0	0.0	.	Atlas-SNP
IRX4	50805	hgsc.bcm.edu	37	5	1879909	1879909	+	Missense_Mutation	SNP	C	C	A	rs200961337	alternate_allele	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	IRX4-226	NM_016358	exon4	c.G445T	p.A149S	GCGTGGCGTTCTT	.	106.0	82.0	62.0	0.0	.	Atlas-SNP
MYO10	4651	hgsc.bcm.edu	37	5	16671084	16671084	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	MYO10-3	NM_012334	exon39	c.C5434A	p.H1812N	CTTCGTGGGCCTG	.	86.0	13.0	98.0	0.0	.	Atlas-SNP
MROH2B	133558	hgsc.bcm.edu	37	5	41032905	41032905	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	.	NM_173489	exon24	c.C2380T	p.P794S	CCAGGGGCTCGTC	.	95.0	31.0	78.0	0.0	.	Atlas-SNP
ITGB8	3696	hgsc.bcm.edu	37	7	20418693	20418693	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	ITGB8-227	NM_002214	exon4	c.G408A	p.M136I	TTTTATGCTGAAA	.	28.0	9.0	19.0	0.0	.	Atlas-SNP
GLI3	2737	hgsc.bcm.edu	37	7	42005050	42005050	+	Missense_Mutation	SNP	G	G	T	rs147343252		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	GLI3-1149	NM_000168	exon15	c.C3621A	p.S1207R	AGGCCCGCTCCTC	.	61.0	4.0	11.0	0.0	G|1.000;T|0.000	Atlas-SNP
MYO1G	64005	hgsc.bcm.edu	37	7	45002430	45002430	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	MYO1G-137	NM_033054	exon22	c.C2965T	p.R989C	TGAGGCGCCGGAC	.	105.0	64.0	12.0	0.0	.	Atlas-SNP
ASB10	136371	hgsc.bcm.edu	37	7	150873649	150873649	+	Splice_Site	SNP	C	C	A	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	ASB10-226	NM_080871	exon5	c.1173+1G>T	.	ATCTGACCTGCAG	.	288.0	133.0	234.0	0.0	.	Atlas-SNP
UBE3C	9690	hgsc.bcm.edu	37	7	157041208	157041208	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	UBE3C-704	NM_014671	exon19	c.C2628T	p.Y876Y	GAGCTACGAAGAC	.	109.0	7.0	90.0	0.0	.	Atlas-SNP
CSMD3	114788	hgsc.bcm.edu	37	8	114186110	114186110	+	Missense_Mutation	SNP	G	G	A	rs201775807	alternate_allele	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	CSMD3-1132	NM_198123	exon4	c.C550T	p.P184S	TGGGTGGAACACC	.	78.0	31.0	50.0	0.0	G|0.999;C|0.001	Atlas-SNP
TLN1	7094	hgsc.bcm.edu	37	9	35716437	35716437	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	TLN1-609	NM_006289	exon20	c.G2575A	p.A859T	TGGCAGCACTTAA	.	101.0	86.0	148.0	0.0	.	Atlas-SNP
BCORL1	63035	hgsc.bcm.edu	37	X	129155104	129155104	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	BCORL1-294	NM_021946	exon4	c.C3586T	p.R1196X	GGAAAACGAGCCG	.	321.0	158.0	208.0	1.0	.	Atlas-SNP
