Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Algorithm
TTC40	54777	hgsc.bcm.edu	37	10	134736085	134736085	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	.	NM_001200049	exon12	c.C1384T	p.R462W	TGTCCCGGTAGAG	.	155.0	46.0	124.0	0.0	.	Atlas-SNP
KNDC1	85442	hgsc.bcm.edu	37	10	135015372	135015372	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	KNDC1-229	NM_152643	exon17	c.G3357T	p.A1119A	GCAGGCGGACGGG	.	69.0	5.0	23.0	0.0	.	Atlas-SNP
OR52I2	143502	hgsc.bcm.edu	37	11	4608887	4608887	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	OR52I2-91	NM_001005170	exon1	c.A845C	p.Y282S	TGTACTATCTACC	.	222.0	50.0	179.0	0.0	.	Atlas-SNP
NLRP10	338322	hgsc.bcm.edu	37	11	7982583	7982583	+	Silent	SNP	G	G	A	rs138681119	byfrequency	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	NLRP10-209	NM_176821	exon2	c.C576T	p.T192T	AGTACCGGTGGCC	.	140.0	25.0	75.0	0.0	G|1.000;A|0.000	Atlas-SNP
FRMD8	83786	hgsc.bcm.edu	37	11	65167323	65167323	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	FRMD8-227	NM_031904	exon8	c.G920C	p.R307T	ATAGCAGAGAGAA	.	247.0	40.0	54.0	0.0	.	Atlas-SNP
GLB1L2	89944	hgsc.bcm.edu	37	11	134240910	134240910	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	GLB1L2-25	NM_138342	exon13	c.G1224C	p.K408N	AATCAAGTCTGAA	.	97.0	18.0	91.0	0.0	.	Atlas-SNP
CAPRIN1	4076	hgsc.bcm.edu	37	11	34097794	34097795	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	CAPRIN1-91	NM_005898	exon5	c.377_378del	p.126_126del	.	.	49.0	13.0	70.0	0.0	.	Atlas-Indel
SLC2A13	114134	hgsc.bcm.edu	37	12	40441854	40441854	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	SLC2A13-515	NM_052885	exon2	c.A715T	p.R239W	CAAACCTCCATCC	.	62.0	9.0	47.0	0.0	.	Atlas-SNP
MCRS1	10445	hgsc.bcm.edu	37	12	49957272	49957272	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	MCRS1-289	NM_001012300	exon6	c.C654T	p.S218S	GGCCTTGCTCTGG	.	46.0	14.0	56.0	0.0	.	Atlas-SNP
ALX1	8092	hgsc.bcm.edu	37	12	85677521	85677521	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	ALX1-24	NM_006982	exon2	c.G398A	p.R133Q	AGAAACGGAGGCA	.	210.0	41.0	176.0	0.0	.	Atlas-SNP
AACS	65985	hgsc.bcm.edu	37	12	125561105	125561105	+	Silent	SNP	A	A	C	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	AACS-92	NM_023928	exon3	c.A306C	p.A102A	CTATGCAGAAAAC	.	158.0	36.0	135.0	0.0	.	Atlas-SNP
ARL11	115761	hgsc.bcm.edu	37	13	50204849	50204849	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	ARL11-90	NM_138450	exon2	c.A266G	p.D89G	TGCTGGACAGCAC	.	98.0	11.0	144.0	0.0	.	Atlas-SNP
ARL11	115761	hgsc.bcm.edu	37	13	50204863	50204863	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	ARL11-90	NM_138450	exon2	c.G280T	p.A94S	GATGAAGCCCGCT	.	92.0	11.0	132.0	0.0	.	Atlas-SNP
SLC24A4	123041	hgsc.bcm.edu	37	14	92920319	92920319	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	SLC24A4-93	NM_153646	exon11	c.T956A	p.F319Y	CCAAGTTCACCTT	.	302.0	80.0	395.0	0.0	.	Atlas-SNP
SCG3	29106	hgsc.bcm.edu	37	15	51981440	51981440	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	SCG3-91	NM_013243	exon6	c.C565G	p.L189V	CATACACTGGAAG	.	86.0	8.0	159.0	0.0	.	Atlas-SNP
C16orf45	89927	hgsc.bcm.edu	37	16	15596190	15596190	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	C16orf45-91	NM_001142469	exon1	c.C12A	p.D4E	GGGCGACCTCACA	.	185.0	22.0	127.0	0.0	.	Atlas-SNP
GTF3C1	2975	hgsc.bcm.edu	37	16	27503663	27503663	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	GTF3C1-94	NM_001520	exon19	c.A3147G	p.P1049P	ACCTAGTGGGGTG	.	137.0	24.0	95.0	0.0	.	Atlas-SNP
CDIPT	10423	hgsc.bcm.edu	37	16	29870513	29870515	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	CTT	CTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	CDIPT-90	NM_006319	exon6	c.638_640del	p.213_214del	.	.	148.0	34.0	106.0	0.0	.	Atlas-Indel
MUC16	94025	hgsc.bcm.edu	37	19	9045734	9045734	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	MUC16-566	NM_024690	exon5	c.C35897G	p.T11966S	AAGATAGTGGTTG	.	306.0	100.0	297.0	0.0	.	Atlas-SNP
DNMT1	1786	hgsc.bcm.edu	37	19	10259655	10259655	+	Silent	SNP	G	G	A	rs200928585		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	DNMT1-660	NM_001130823	exon27	c.C2625T	p.D875D	CTTCCCGTCGTCC	.	170.0	36.0	112.0	0.0	G|0.999;A|0.000	Atlas-SNP
ZNF420	147923	hgsc.bcm.edu	37	19	37619839	37619839	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	ZNF420-90	NM_144689	exon5	c.G1946A	p.G649E	AATGTGGGAAGGC	.	88.0	22.0	60.0	0.0	.	Atlas-SNP
ADCK4	79934	hgsc.bcm.edu	37	19	41220217	41220217	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	ADCK4-319	NM_024876	exon3	c.G188C	p.R63P	GCCTCCCGTGCCC	.	35.0	8.0	28.0	0.0	.	Atlas-SNP
ERF	2077	hgsc.bcm.edu	37	19	42753866	42753866	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	ERF-658	NM_006494	exon4	c.C398T	p.P133L	ACTGGCGGGGCAC	.	103.0	23.0	96.0	0.0	.	Atlas-SNP
CLCA4	22802	hgsc.bcm.edu	37	1	87033202	87033202	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	CLCA4-92	NM_012128	exon7	c.T1050C	p.D350D	CTTTGATAGTACT	.	142.0	49.0	147.0	0.0	.	Atlas-SNP
TNR	7143	hgsc.bcm.edu	37	1	175293508	175293508	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	TNR-324	NM_003285	exon22	c.A3941T	p.E1314V	CTGGACTCCCCGT	.	257.0	67.0	294.0	0.0	.	Atlas-SNP
HMCN1	83872	hgsc.bcm.edu	37	1	186092320	186092320	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	HMCN1-113	NM_031935	exon81	c.C12467T	p.S4156L	CAGGATCAAGCAG	.	103.0	32.0	132.0	0.0	.	Atlas-SNP
NFASC	23114	hgsc.bcm.edu	37	1	204923329	204923329	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	NFASC-139	NM_001160331	exon3	c.C211T	p.R71X	TGGACACGAAACA	.	120.0	12.0	144.0	0.0	.	Atlas-SNP
PANK2	80025	hgsc.bcm.edu	37	20	3869889	3869889	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	PANK2-115	NM_153638	exon1	c.C142G	p.L48V	GATAGCCTCTCAT	.	118.0	46.0	162.0	0.0	.	Atlas-SNP
RTFDC1	51507	hgsc.bcm.edu	37	20	55059239	55059239	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	.	NM_016407	exon5	c.C471T	p.C157C	AGTTTGCCACACG	.	76.0	4.0	103.0	0.0	.	Atlas-SNP
KRTAP21-3	100288323	hgsc.bcm.edu	37	21	32090951	32090951	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	.	NM_001164435	exon1	c.T127G	p.Y43D	CAGAATATTTATT	.	249.0	42.0	233.0	0.0	.	Atlas-SNP
TIMP3	7078	hgsc.bcm.edu	37	22	33255323	33255324	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	TIMP3-226	NM_000362	exon5	c.595_596insC	p.A199fs	.	.	77.0	21.0	74.0	0.0	.	Atlas-Indel
PEX13	5194	hgsc.bcm.edu	37	2	61275821	61275821	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	PEX13-91	NM_002618	exon4	c.C1128T	p.A376A	AGCTGCCTTTGAA	.	169.0	31.0	126.0	0.0	.	Atlas-SNP
NXPH2	11249	hgsc.bcm.edu	37	2	139429091	139429091	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	NXPH2-72	NM_007226	exon2	c.C196T	p.P66S	GCTTGGGCACCGG	.	115.0	8.0	76.0	0.0	.	Atlas-SNP
MAP2	4133	hgsc.bcm.edu	37	2	210557459	210557459	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	MAP2-591	NM_002374	exon7	c.G565T	p.G189C	AAGCCTGGTGAAG	.	162.0	37.0	121.0	0.0	.	Atlas-SNP
IQSEC1	9922	hgsc.bcm.edu	37	3	12977227	12977227	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	IQSEC1-91	NM_014869	exon3	c.C1331G	p.P444R	TCCAGGGGCCTGG	.	54.0	12.0	56.0	0.0	.	Atlas-SNP
LZTFL1	54585	hgsc.bcm.edu	37	3	45879475	45879475	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	LZTFL1-90	NM_020347	exon2	c.G72C	p.K24N	GCCTCTCTTTGAA	.	60.0	16.0	59.0	0.0	.	Atlas-SNP
PTH1R	5745	hgsc.bcm.edu	37	3	46943321	46943321	+	Silent	SNP	C	C	A	rs151330461	byfrequency;alternate_allele	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	PTH1R-522	NM_001184744	exon12	c.C1182A	p.A394A	CAACGCCGGCCGG	.	201.0	52.0	236.0	0.0	C|1.000;T|0.000	Atlas-SNP
MME	4311	hgsc.bcm.edu	37	3	154884739	154884739	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	MME-516	NM_000902	exon18	c.C1709A	p.S570Y	AGCAGTCCAACTC	.	103.0	30.0	111.0	0.0	.	Atlas-SNP
CRIPAK	285464	hgsc.bcm.edu	37	4	1388755	1388755	+	Silent	SNP	C	C	G	rs141481663	byfrequency	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	CRIPAK-90	NM_175918	exon1	c.C456G	p.P152P	CGTGCCCATGCGG	.	62.0	10.0	19.0	0.0	C|0.960;G|0.040	Atlas-SNP
STIM2	57620	hgsc.bcm.edu	37	4	26997088	26997088	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	STIM2-91	NM_001169117	exon4	c.A485G	p.N162S	ACAACAATGTCAA	.	67.0	16.0	95.0	0.0	.	Atlas-SNP
SLCO6A1	133482	hgsc.bcm.edu	37	5	101748695	101748695	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	SLCO6A1-96	NM_173488	exon9	c.A1625C	p.K542T	ATTACCTTTTTTT	.	39.0	18.0	51.0	0.0	.	Atlas-SNP
BPHL	670	hgsc.bcm.edu	37	6	3118992	3118992	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	BPHL-90	NM_004332	exon1	c.C18T	p.G6G	GCTGGGCGGCCGG	.	57.0	11.0	30.0	0.0	.	Atlas-SNP
EYS	346007	hgsc.bcm.edu	37	6	65655687	65655687	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	EYS-660	NM_001142800	exon15	c.C2380T	p.R794X	CTCACCGATAGCT	.	91.0	24.0	90.0	0.0	.	Atlas-SNP
FGFR1OP	11116	hgsc.bcm.edu	37	6	167436000	167436000	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	FGFR1OP-683	NM_194429	exon7	c.C623G	p.S208C	TTGGATCTTTTCT	.	79.0	18.0	87.0	0.0	.	Atlas-SNP
HDAC9	9734	hgsc.bcm.edu	37	7	18705997	18705997	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	HDAC9-227	NM_001204147	exon10	c.A1389G	p.G463G	ACTGGGACAAGTT	.	185.0	38.0	171.0	0.0	.	Atlas-SNP
BOP1	23246	hgsc.bcm.edu	37	8	145486621	145486623	+	In_Frame_Del	DEL	GTT	GTT	-	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	GTT	GTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	BOP1-90	NM_015201	exon14	c.1901_1903del	p.634_635del	.	.	163.0	30.0	145.0	0.0	.	Atlas-Indel
TTC16	158248	hgsc.bcm.edu	37	9	130492920	130492920	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	TTC16-90	NM_144965	exon14	c.A1858G	p.T620A	GTCAGGACCACAG	.	67.0	23.0	62.0	0.0	.	Atlas-SNP
TTC16	158248	hgsc.bcm.edu	37	9	130493619	130493619	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	TTC16-90	NM_144965	exon14	c.G2557A	p.G853R	ACCTGGGGACCCA	.	215.0	19.0	185.0	0.0	.	Atlas-SNP
SLC2A6	11182	hgsc.bcm.edu	37	9	136339193	136339193	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	SLC2A6-90	NM_001145099	exon7	c.A945G	p.A315A	GATGGCTGCGTCG	.	112.0	7.0	102.0	0.0	.	Atlas-SNP
TPRN	286262	hgsc.bcm.edu	37	9	140086594	140086594	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	TPRN-90	NM_001128228	exon4	c.C2106A	p.D702E	GCGGAAGTCCGAG	.	55.0	4.0	81.0	0.0	.	Atlas-SNP
