Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Algorithm
PPYR1	5540	hgsc.bcm.edu	37	10	47087602	47087602	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	PPYR1-524	NM_005972	exon3	c.C819A	p.A273A	GGTGGCCTTTGCT	.	135.0	30.0	95.0	0.0	.	Atlas-SNP
SLK	9748	hgsc.bcm.edu	37	10	105779553	105779553	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	SLK-549	NM_014720	exon16	c.C3194T	p.T1065I	GACAGACTCAAGA	.	202.0	37.0	212.0	0.0	.	Atlas-SNP
PAPSS2	9060	hgsc.bcm.edu	37	10	89474830	89474831	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	PAPSS2-493	NM_004670	exon6	c.727_728del	p.243_243del	.	.	100.0	39.0	102.0	0.0	.	Atlas-Indel
CREB3L1	90993	hgsc.bcm.edu	37	11	46321507	46321507	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	CREB3L1-92	NM_052854	exon2	c.C124T	p.H42Y	CTGGACCACTTTA	.	310.0	112.0	343.0	0.0	.	Atlas-SNP
NTN4	59277	hgsc.bcm.edu	37	12	96104338	96104338	+	Missense_Mutation	SNP	C	C	T	rs148021049	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	NTN4-92	NM_021229	exon5	c.G1061A	p.R354H	CCACTACGATTCC	.	174.0	84.0	184.0	0.0	C|0.999;T|0.001	Atlas-SNP
ATP8A2	51761	hgsc.bcm.edu	37	13	26436472	26436472	+	Missense_Mutation	SNP	A	A	G	rs138600634	alternate_allele	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	ATP8A2-138	NM_016529	exon33	c.A3109G	p.T1037A	ATGCTGACCTGGC	.	178.0	54.0	125.0	0.0	A|0.999;T|0.000	Atlas-SNP
PDX1	3651	hgsc.bcm.edu	37	13	28494294	28494294	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	PDX1-514	NM_000209	exon1	c.T19C	p.Y7H	GAGCAGTACTACG	.	204.0	82.0	80.0	0.0	.	Atlas-SNP
KRTAP4-7	100132476	hgsc.bcm.edu	37	17	39240791	39240791	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	.	NM_033061	exon1	c.C333G	p.R111R	CTGCCGCCCCAGC	.	31.0	7.0	40.0	0.0	.	Atlas-SNP
KRTAP4-7	100132476	hgsc.bcm.edu	37	17	39240796	39240796	+	Missense_Mutation	SNP	G	G	C	rs199957151		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	.	NM_033061	exon1	c.G338C	p.S113T	GCCCCAGCTGCTG	.	42.0	20.0	42.0	0.0	.	Atlas-SNP
TP53	7157	hgsc.bcm.edu	37	17	7579716	7579716	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	TP53-70225	NM_001126113	exon3	c.81delT	p.P27fs	.	.	28.0	25.0	43.0	0.0	.	Atlas-Indel
DOT1L	84444	hgsc.bcm.edu	37	19	2191208	2191208	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	DOT1L-132	NM_032482	exon5	c.C462T	p.T154T	GATGACCGACGAC	.	240.0	112.0	229.0	0.0	.	Atlas-SNP
CRB1	23418	hgsc.bcm.edu	37	1	197404443	197404443	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	CRB1-161	NM_201253	exon9	c.T3450G	p.H1150Q	TTTGCATGGAGGA	.	240.0	26.0	144.0	0.0	.	Atlas-SNP
LGALS8	3964	hgsc.bcm.edu	37	1	236700878	236700878	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	LGALS8-91	NM_201544	exon3	c.G127A	p.A43T	AGTGACGCAGACA	.	185.0	87.0	134.0	0.0	.	Atlas-SNP
NEFH	4744	hgsc.bcm.edu	37	22	29885594	29885594	+	Silent	SNP	A	A	T	rs79235463	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	NEFH-90	NM_021076	exon4	c.A1965T	p.P655P	GTCCCCAGAGAAG	.	241.0	29.0	240.0	0.0	A|0.500;T|0.500	Atlas-SNP
TEF	7008	hgsc.bcm.edu	37	22	41791922	41791922	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	TEF-91	NM_001145398	exon4	c.G780C	p.K260N	GTGCAAGACCATC	.	183.0	12.0	192.0	0.0	.	Atlas-SNP
KCNJ3	3760	hgsc.bcm.edu	37	2	155555818	155555818	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	KCNJ3-92	NM_002239	exon1	c.C531T	p.I177I	CCTCATCGGCTGC	.	99.0	6.0	103.0	0.0	.	Atlas-SNP
DSPP	1834	hgsc.bcm.edu	37	4	88536436	88536436	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	DSPP-90	NM_014208	exon5	c.C2622T	p.S874S	CAGCAGCAACAGC	.	458.0	34.0	532.0	0.0	.	Atlas-SNP
DSPP	1834	hgsc.bcm.edu	37	4	88536437	88536437	+	Missense_Mutation	SNP	A	A	G	rs200670885		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	DSPP-90	NM_014208	exon5	c.A2623G	p.N875D	AGCAGCAACAGCA	.	454.0	34.0	532.0	0.0	.	Atlas-SNP
SLC9A3	6550	hgsc.bcm.edu	37	5	475724	475724	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	SLC9A3-90	NM_004174	exon15	c.G2203C	p.E735Q	GGAACTCGATCCC	.	100.0	5.0	94.0	0.0	.	Atlas-SNP
APC	324	hgsc.bcm.edu	37	5	112103039	112103039	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	APC-12026	NM_001127511	exon3	c.A404G	p.N135S	TTGTAAATGGAAG	.	120.0	50.0	141.0	0.0	.	Atlas-SNP
RANBP17	64901	hgsc.bcm.edu	37	5	170632528	170632528	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	RANBP17-524	NM_022897	exon20	c.C2143T	p.R715C	TGACAGCGTATGT	.	213.0	14.0	184.0	0.0	.	Atlas-SNP
ISL1	3670	hgsc.bcm.edu	37	5	50685485	50685485	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	ISL1-515	NM_002202	exon4	c.483delG	p.E161fs	.	.	49.0	26.0	12.0	0.0	.	Atlas-Indel
FAM46A	55603	hgsc.bcm.edu	37	6	82461742	82461742	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	FAM46A-90	NM_017633	exon2	c.C117T	p.G39G	GTCGCCGCCGCCG	.	100.0	14.0	27.0	0.0	.	Atlas-SNP
DOPEY1	23033	hgsc.bcm.edu	37	6	83830485	83830485	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	DOPEY1-155	NM_001199942	exon10	c.C1047G	p.I349M	TTTAATCAGTTTA	.	152.0	32.0	72.0	0.0	.	Atlas-SNP
KLRG2	346689	hgsc.bcm.edu	37	7	139164980	139164980	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	KLRG2-90	NM_198508	exon2	c.C771T	p.Y257Y	CTTCACGTACATG	.	107.0	34.0	72.0	0.0	.	Atlas-SNP
C9orf172	389813	hgsc.bcm.edu	37	9	139741088	139741089	+	Frame_Shift_Del	DEL	GT	GT	-	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	GT	GT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	.	NM_001080482	exon1	c.2221_2222del	p.741_741del	.	.	58.0	10.0	30.0	0.0	.	Pindel
SHROOM4	57477	hgsc.bcm.edu	37	X	50345785	50345785	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	SHROOM4-131	NM_020717	exon7	c.T3790A	p.S1264T	CCCCTGAAGGAGG	.	82.0	14.0	78.0	0.0	.	Atlas-SNP
ARHGAP36	158763	hgsc.bcm.edu	37	X	130192420	130192420	+	Splice_Site	SNP	T	T	A	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	ARHGAP36-133	.	.	.	.	CCGTGGTGAGTGG	.	77.0	4.0	33.0	0.0	.	Atlas-SNP
