Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Algorithm
ANKRD26	22852	hgsc.bcm.edu	37	10	27322227	27322227	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	ANKRD26-138	NM_014915	exon25	c.C3734T	p.T1245M	CGTGACGTAACCT	.	63.0	46.0	109.0	0.0	.	Atlas-SNP
PCGF6	84108	hgsc.bcm.edu	37	10	105110740	105110741	+	In_Frame_Ins	INS	-	-	GGAGGC	rs113359610		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	PCGF6-226	NM_001011663	exon1	c.84_85insGCCTCC	p.P28delinsPPP	.	.	27.0	14.0	7.0	0.0	-|0.590;GGAGGC|0.410	Pindel
ATF7IP	55729	hgsc.bcm.edu	37	12	14578126	14578126	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	ATF7IP-252	NM_018179	exon2	c.A1277G	p.N426S	TAGAAAATACAGA	.	71.0	30.0	57.0	0.0	.	Atlas-SNP
RECQL	5965	hgsc.bcm.edu	37	12	21624011	21624011	+	Silent	SNP	A	A	C	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	RECQL-228	NM_032941	exon15	c.T1689G	p.A563A	AGCATAAGCTGTA	.	141.0	60.0	97.0	0.0	.	Atlas-SNP
CTDSP2	10106	hgsc.bcm.edu	37	12	58217464	58217464	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	CTDSP2-514	NM_005730	exon8	c.T737C	p.L246P	AGGTTCAGCAACT	.	184.0	74.0	126.0	0.0	.	Atlas-SNP
GAS2L3	283431	hgsc.bcm.edu	37	12	101005850	101005850	+	Missense_Mutation	SNP	G	G	C	rs143611209	byfrequency;alternate_allele	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	GAS2L3-227	NM_174942	exon6	c.G376C	p.A126P	AATACCGCAAACT	.	207.0	32.0	126.0	0.0	G|1.000;T|0.000	Atlas-SNP
RIMBP2	23504	hgsc.bcm.edu	37	12	130921471	130921471	+	Silent	SNP	T	T	C	rs2292663	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	RIMBP2-142	NM_015347	exon10	c.A1971G	p.P657P	TGGCTGTGGCAGG	.	89.0	48.0	6.0	0.0	T|0.868;C|0.132	Atlas-SNP
CHD8	57680	hgsc.bcm.edu	37	14	21863156	21863157	+	Frame_Shift_Ins	INS	-	-	CTCTATCTTCATTTGTTCT	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	CHD8-277	NM_001170629	exon29	c.5305_5306insAGAACAAATGAAGATAGAG	p.A1769fs	.	.	46.0	14.0	69.0	0.0	.	Pindel
TLE3	7090	hgsc.bcm.edu	37	15	70349954	70349954	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	TLE3-522	NM_020908	exon13	c.G1068A	p.A356A	GGGCGCCGCATAG	.	49.0	37.0	50.0	0.0	.	Atlas-SNP
PYCARD	29108	hgsc.bcm.edu	37	16	31213958	31213958	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	PYCARD-651	NM_145182	exon1	c.G54A	p.E18E	GAGCTCCTCGGCG	.	166.0	35.0	38.0	0.0	.	Atlas-SNP
NCOR1	9611	hgsc.bcm.edu	37	17	16097787	16097787	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	NCOR1-229	NM_001190440	exon1	c.C97A	p.R33S	GGTGGCGGGTGTT	.	80.0	4.0	86.0	0.0	.	Atlas-SNP
NF1	4763	hgsc.bcm.edu	37	17	29661949	29661949	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	NF1-3353	NM_001042492	exon40	c.5905delC	p.Q1969fs	.	.	97.0	62.0	82.0	0.0	.	Atlas-Indel
PRKCG	5582	hgsc.bcm.edu	37	19	54393237	54393237	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	PRKCG-1367	NM_002739	exon5	c.494delT	p.I165fs	.	.	57.0	24.0	39.0	0.0	.	Atlas-Indel
ZCCHC17	51538	hgsc.bcm.edu	37	1	31819587	31819587	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	ZCCHC17-91	NM_016505	exon6	c.G418T	p.G140C	TGTAAAGGTAGGG	.	106.0	36.0	105.0	0.0	.	Atlas-SNP
XDH	7498	hgsc.bcm.edu	37	2	31572920	31572920	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	XDH-158	NM_000379	exon25	c.C2801A	p.T934N	CCACAGGTCACTG	.	55.0	17.0	74.0	0.0	.	Atlas-SNP
ST6GAL1	6480	hgsc.bcm.edu	37	3	186793513	186793513	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	ST6GAL1-650	NM_173216	exon8	c.T1143C	p.H381H	GAAGCATCTCAAC	.	87.0	28.0	89.0	0.0	.	Atlas-SNP
HIST1H4E	8367	hgsc.bcm.edu	37	6	26204877	26204877	+	Missense_Mutation	SNP	C	C	T	rs201304438	alternate_allele	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	HIST1H4E-69	NM_003545	exon1	c.C5T	p.S2F	TCATGTCTGGTCG	.	74.0	30.0	75.0	0.0	C|0.999;G|0.000	Atlas-SNP
RIMS1	22999	hgsc.bcm.edu	37	6	72945399	72945399	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	RIMS1-144	NM_001168409	exon3	c.C4G	p.P2A	ACCATGCCCAAAG	.	114.0	34.0	119.0	0.0	.	Atlas-SNP
RIMS1	22999	hgsc.bcm.edu	37	6	72945409	72945409	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	RIMS1-144	NM_001168409	exon3	c.C14G	p.S5X	AAGACTCAGGTGC	.	114.0	34.0	113.0	0.0	.	Atlas-SNP
TBP	6908	hgsc.bcm.edu	37	6	170871004	170871004	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	TBP-91	NM_001172085	exon2	c.G120A	p.Q40Q	GCAGCAGCAACAA	.	52.0	10.0	62.0	0.0	.	Atlas-SNP
FUCA2	2519	hgsc.bcm.edu	37	6	143832707	143832708	+	In_Frame_Ins	INS	-	-	GCAGCA	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	FUCA2-91	NM_032020	exon1	c.65_66insTGCTGC	p.P22delinsLLP	.	.	66.0	43.0	6.0	0.0	.	Atlas-Indel
POLD2	5425	hgsc.bcm.edu	37	7	44156093	44156093	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	POLD2-229	NM_001256879	exon8	c.A797G	p.K266R	GTTTTCTTGGTGA	.	88.0	14.0	91.0	0.0	.	Atlas-SNP
ZNF703	80139	hgsc.bcm.edu	37	8	37554967	37554967	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	ZNF703-523	NM_025069	exon2	c.C548T	p.S183F	CGTCCTCCTCGTC	.	72.0	23.0	33.0	0.0	.	Atlas-SNP
KIAA2026	158358	hgsc.bcm.edu	37	9	5969127	5969127	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	KIAA2026-92	NM_001017969	exon3	c.C1104G	p.T368T	TTCCCAGGTCCTA	.	91.0	28.0	73.0	0.0	.	Atlas-SNP
SMC1A	8243	hgsc.bcm.edu	37	X	53440047	53440047	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	SMC1A-232	NM_006306	exon5	c.T657C	p.A219A	TACCTGAGCCCGT	.	139.0	20.0	103.0	0.0	.	Atlas-SNP
PIN4	5303	hgsc.bcm.edu	37	X	71417357	71417357	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	PIN4-130	NM_006223	exon4	c.T452C	p.M151T	TTATTATGGTCGA	.	259.0	105.0	240.0	0.0	.	Atlas-SNP
