Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Algorithm
CYP17A1	1586	hgsc.bcm.edu	37	10	104590691	104590692	+	Nonsense_Mutation	INS	-	-	AGCTTACTGACGGTGAG	novel		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	CYP17A1-90	NM_000102	exon8	c.1295_1296insCTCACCGTCAGTAAGCT	p.Y432_L433delinsSHRQX	.	.	166.0	32.0	181.0	0.0	.	Pindel
KRTAP5-10	387273	hgsc.bcm.edu	37	11	71276681	71276681	+	Silent	SNP	T	T	C	rs113879786	bycluster;byfrequency;by1000genomes	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	KRTAP5-10-91	NM_001012710	exon1	c.T48C	p.G16G	TGGGGGTTGTGGC	.	174.0	45.0	89.0	0.0	T|0.717;C|0.283	Atlas-SNP
PDE2A	5138	hgsc.bcm.edu	37	11	72308628	72308628	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	PDE2A-156	NM_002599	exon5	c.A359G	p.N120S	AGCCCATTGCAGC	.	29.0	11.0	55.0	0.0	.	Atlas-SNP
DCP1B	196513	hgsc.bcm.edu	37	12	2058258	2058258	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	DCP1B-91	NM_152640	exon8	c.C1767G	p.L589L	CTGAATGAGGTAC	.	70.0	54.0	110.0	0.0	.	Atlas-SNP
AVPR1A	552	hgsc.bcm.edu	37	12	63544384	63544384	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	AVPR1A-946	NM_000706	exon1	c.G233A	p.R78Q	GGCGTCCGGTGCA	.	171.0	91.0	49.0	0.0	.	Atlas-SNP
PNN	5411	hgsc.bcm.edu	37	14	39650733	39650733	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	PNN-91	NM_002687	exon9	c.C1820A	p.S607Y	GTAGTTCCAGTAG	.	212.0	100.0	213.0	1.0	.	Atlas-SNP
SPTB	6710	hgsc.bcm.edu	37	14	65241872	65241872	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	SPTB-100	NM_001024858	exon22	c.C4813A	p.L1605I	CGTAGAGCTCCTG	.	137.0	10.0	105.0	0.0	.	Atlas-SNP
MYO5A	4644	hgsc.bcm.edu	37	15	52689550	52689550	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	MYO5A-93	NM_000259	exon10	c.G1167T	p.K389N	GATGGGCTTGATG	.	170.0	64.0	167.0	0.0	.	Atlas-SNP
ARID3B	10620	hgsc.bcm.edu	37	15	74865529	74865529	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	ARID3B-90	NM_006465	exon4	c.C681T	p.V227V	CTTCGTCTTTATG	.	97.0	43.0	101.0	0.0	.	Atlas-SNP
HYDIN	54768	hgsc.bcm.edu	37	16	71012910	71012910	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	HYDIN-92	NM_001270974	exon30	c.C4545A	p.A1515A	TTTCCTGGCTTGA	.	214.0	36.0	122.0	0.0	.	Atlas-SNP
EEF2	1938	hgsc.bcm.edu	37	19	3976662	3976662	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	EEF2-90	NM_001961	exon15	c.G2467C	p.D823H	AGGGGTCTCCGGG	.	56.0	25.0	71.0	0.0	.	Atlas-SNP
CAPN2	824	hgsc.bcm.edu	37	1	223949944	223949944	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	CAPN2-523	NM_001748	exon14	c.G1623C	p.L541F	CCAGTTGGCAGGA	.	161.0	77.0	131.0	0.0	.	Atlas-SNP
CASS4	57091	hgsc.bcm.edu	37	20	55012236	55012236	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	CASS4-25	NM_020356	exon2	c.C53T	p.A18V	CCAGGGCACTTTA	.	138.0	59.0	123.0	0.0	.	Atlas-SNP
BCR	613	hgsc.bcm.edu	37	22	23627302	23627302	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	BCR-1349	NM_021574	exon10	c.C2320G	p.P774A	GCAGTGCCCAACA	.	224.0	109.0	207.0	1.0	.	Atlas-SNP
MYO7B	4648	hgsc.bcm.edu	37	2	128394466	128394466	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	MYO7B-47	NM_001080527	exon46	c.G6227T	p.R2076L	GCAGCCGCCTGCT	.	63.0	4.0	59.0	0.0	.	Atlas-SNP
CASR	846	hgsc.bcm.edu	37	3	122003707	122003707	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	CASR-97	NM_000388	exon7	c.G2906A	p.G969D	TCTTTGGCAGCGG	.	376.0	158.0	366.0	0.0	.	Atlas-SNP
CRIPAK	285464	hgsc.bcm.edu	37	4	1388726	1388726	+	Missense_Mutation	SNP	T	T	C	rs199689156	byfrequency	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	CRIPAK-90	NM_175918	exon1	c.T427C	p.C143R	TGCCCATGCGGAG	.	151.0	21.0	23.0	0.0	T|0.980;C|0.020	Atlas-SNP
CRIPAK	285464	hgsc.bcm.edu	37	4	1388848	1388848	+	Silent	SNP	A	A	C	rs74511366	byfrequency	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	CRIPAK-90	NM_175918	exon1	c.A549C	p.P183P	CGTGCCAACGTGG	.	171.0	17.0	40.0	0.0	A|0.993;C|0.000;G|0.006	Atlas-SNP
PCDHB13	56123	hgsc.bcm.edu	37	5	140595625	140595625	+	Missense_Mutation	SNP	G	G	A	rs76927815		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	PCDHB13-93	NM_018933	exon1	c.G1930A	p.V644I	GTGCTGGTCAAGG	.	170.0	68.0	14.0	0.0	G|0.500;A|0.500	Atlas-SNP
TAF1L	138474	hgsc.bcm.edu	37	9	32630736	32630736	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	TAF1L-870	NM_153809	exon1	c.G4842A	p.E1614E	CACAATCTCCTGA	.	235.0	101.0	240.0	0.0	.	Atlas-SNP
SVEP1	79987	hgsc.bcm.edu	37	9	113192698	113192698	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	SVEP1-75	NM_153366	exon33	c.G5386A	p.E1796K	CATTTTCCGGATT	.	133.0	55.0	94.0	0.0	.	Atlas-SNP
GPRASP2	114928	hgsc.bcm.edu	37	X	101971586	101971586	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	GPRASP2-131	NM_001004051	exon5	c.G1789T	p.E597X	TCTGAAGAGTTTG	.	170.0	155.0	142.0	0.0	.	Atlas-SNP
