Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Algorithm
CPXM2	119587	hgsc.bcm.edu	37	10	125516731	125516731	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	.	CPXM2-92	NM_198148	exon12	c.1916delA	p.Q639fs	.	.	90.0	64.0	141.0	0.0	.	Atlas-Indel
MUC5B	727897	hgsc.bcm.edu	37	11	1253980	1253980	+	Missense_Mutation	SNP	A	A	G	rs202127660		TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	.	.	NM_002458	exon17	c.A2045G	p.D682G	TCAGCGACTGGAG	.	108.0	6.0	55.0	0.0	.	Atlas-SNP
OR5M10	390167	hgsc.bcm.edu	37	11	56344846	56344846	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	.	.	NM_001004741	exon1	c.A352T	p.M118L	ATGCCATTGAAGC	.	52.0	18.0	105.0	0.0	.	Atlas-SNP
OR5M10	390167	hgsc.bcm.edu	37	11	56344847	56344847	+	Silent	SNP	T	T	G	novel		TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	.	.	NM_001004741	exon1	c.A351C	p.S117S	TGCCATTGAAGCA	.	50.0	13.0	108.0	0.0	.	Atlas-SNP
ALG10	84920	hgsc.bcm.edu	37	12	34175538	34175538	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	.	ALG10-91	NM_032834	exon1	c.G4A	p.A2T	GGAATGGCGCAGC	.	173.0	63.0	126.0	0.0	.	Atlas-SNP
LRRC36	55282	hgsc.bcm.edu	37	16	67400961	67400961	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	.	LRRC36-90	NM_018296	exon8	c.C796T	p.P266S	CGATCCCCAGAGA	.	102.0	72.0	124.0	0.0	.	Atlas-SNP
PRKAR1A	5573	hgsc.bcm.edu	37	17	66526554	66526554	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	.	PRKAR1A-1141	NM_212471	exon11	c.1109delT	p.I370fs	.	.	113.0	81.0	142.0	0.0	.	Atlas-Indel
RPN2	6185	hgsc.bcm.edu	37	20	35838497	35838497	+	Silent	SNP	T	T	G	novel		TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	.	RPN2-93	NM_002951	exon8	c.T915G	p.V305V	CACTGTTAAACTA	.	43.0	8.0	61.0	0.0	.	Atlas-SNP
KIF1A	547	hgsc.bcm.edu	37	2	241696843	241696843	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	.	KIF1A-91	NM_001244008	exon27	c.G2751T	p.E917D	CTCATCCTCCTCC	.	116.0	8.0	128.0	0.0	.	Atlas-SNP
CNOT11	55571	hgsc.bcm.edu	37	2	101869801	101869810	+	Frame_Shift_Del	DEL	CACGGCGCTC	CACGGCGCTC	-	novel		TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	CACGGCGCTC	CACGGCGCTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	.	.	NM_017546	exon1	c.374_383del	p.125_128del	.	.	38.0	18.0	8.0	0.0	.	Pindel
NXPE3	91775	hgsc.bcm.edu	37	3	101520307	101520307	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	.	.	NM_001134456	exon5	c.T322A	p.F108I	AGCTACTTTGTCA	.	105.0	84.0	122.0	0.0	.	Atlas-SNP
KIAA1211	57482	hgsc.bcm.edu	37	4	57180576	57180577	+	In_Frame_Ins	INS	-	-	GGAGCGGAG	rs138358443	by1000genomes	TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	.	KIAA1211-70	NM_020722	exon8	c.908_909insGGAGCGGAG	p.A303delinsAERR	.	.	129.0	33.0	17.0	0.0	.	Atlas-Indel
ERAP2	64167	hgsc.bcm.edu	37	5	96232568	96232568	+	Splice_Site	SNP	G	G	A	rs75364820		TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	.	ERAP2-68	NM_022350	exon9	c.1503+1G>A	.	TCAAATGTAAGTC	.	67.0	5.0	43.0	0.0	.	Atlas-SNP
PSMC2	5701	hgsc.bcm.edu	37	7	102995342	102995342	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	.	PSMC2-90	NM_001204453	exon3	c.A136C	p.K46Q	CAGATCAAGCAAG	.	71.0	24.0	61.0	0.0	.	Atlas-SNP
