Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Algorithm
MRC1	4360	hgsc.bcm.edu	37	10	18122634	18122634	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	MRC1-68	NM_002438	exon4	c.G644A	p.G215D	TTGAGGGCAGTGA	.	227.0	69.0	202.0	0.0	.	Atlas-SNP
BTAF1	9044	hgsc.bcm.edu	37	10	93711281	93711281	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	BTAF1-92	NM_003972	exon5	c.G522C	p.L174F	GGATTTGGATTAT	.	103.0	31.0	78.0	0.0	.	Atlas-SNP
SEMA4G	57715	hgsc.bcm.edu	37	10	102740027	102740027	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	SEMA4G-154	NM_001203244	exon10	c.G1277A	p.R426H	ACATACGCTACAC	.	353.0	70.0	170.0	0.0	.	Atlas-SNP
MUC2	4583	hgsc.bcm.edu	37	11	1092966	1092966	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	MUC2-90	NM_002457	exon30	c.C4785A	p.T1595T	CCCAACCCCAACA	.	166.0	11.0	78.0	0.0	.	Atlas-SNP
TRIM51	84767	hgsc.bcm.edu	37	11	55658957	55658957	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	.	NM_032681	exon7	c.C1208G	p.P403R	ATGTTCCAAGACC	.	72.0	9.0	27.0	0.0	.	Atlas-SNP
TNKS1BP1	85456	hgsc.bcm.edu	37	11	57076797	57076797	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	TNKS1BP1-91	NM_033396	exon6	c.G3388A	p.D1130N	CTCTGTCGTTGCC	.	114.0	28.0	82.0	0.0	.	Atlas-SNP
NACA	4666	hgsc.bcm.edu	37	12	57107325	57107325	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	NACA-254	NM_001113203	exon8	c.C2507A	p.A836D	ACCTTGGCTTCCC	.	61.0	4.0	78.0	0.0	.	Atlas-SNP
PPFIA2	8499	hgsc.bcm.edu	37	12	81769579	81769579	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	PPFIA2-231	NM_003625	exon10	c.G1127A	p.R376Q	ACCTGCCGCAGGA	.	132.0	45.0	114.0	0.0	.	Atlas-SNP
FAM109A	144717	hgsc.bcm.edu	37	12	111800827	111800835	+	In_Frame_Del	DEL	GCCACCCCC	GCCACCCCC	-	rs139032867		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	GCCACCCCC	GCCACCCCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	FAM109A-90	NM_001177996	exon4	c.437_445del	p.146_149del	.	.	44.0	16.0	6.0	0.0	GCCACCCCC|0.650;-|0.350	Atlas-Indel
NCOR2	9612	hgsc.bcm.edu	37	12	124824739	124824740	+	Frame_Shift_Ins	INS	-	-	GCCG	rs61519723	bycluster;alternate_allele	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	NCOR2-229	NM_001077261	exon38	c.5470_5471insCGGC	p.S1824fs	.	.	110.0	20.0	7.0	0.0	GCCGCTGCT|1.000;|0.000	Atlas-Indel
CDC16	8881	hgsc.bcm.edu	37	13	115027384	115027384	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	CDC16-226	NM_001078645	exon15	c.C1337G	p.P446R	GGGAACCTTTGTT	.	148.0	30.0	143.0	0.0	.	Atlas-SNP
NRXN3	9369	hgsc.bcm.edu	37	14	79434571	79434571	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	NRXN3-587	NM_004796	exon11	c.C1905T	p.L635L	AAAGCTCGTGGCC	.	253.0	52.0	157.0	0.0	.	Atlas-SNP
KIF23	9493	hgsc.bcm.edu	37	15	69721517	69721517	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	KIF23-227	NM_004856	exon10	c.G1037A	p.R346Q	CTAACCGGACCAG	.	139.0	33.0	120.0	0.0	.	Atlas-SNP
COG8	84342	hgsc.bcm.edu	37	16	69368962	69368962	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	COG8-91	NM_032382	exon3	c.T875A	p.I292N	GAGAAGATGGCAC	.	252.0	71.0	184.0	0.0	.	Atlas-SNP
COG8	84342	hgsc.bcm.edu	37	16	69368963	69368963	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	COG8-91	NM_032382	exon3	c.A874G	p.I292V	AGAAGATGGCACG	.	258.0	72.0	186.0	0.0	.	Atlas-SNP
MSL1	339287	hgsc.bcm.edu	37	17	38289309	38289309	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	MSL1-68	NM_001012241	exon7	c.T714C	p.S238S	TGACAGTGTGTTT	.	118.0	22.0	107.0	0.0	.	Atlas-SNP
KCNH4	23415	hgsc.bcm.edu	37	17	40322162	40322162	+	Silent	SNP	C	C	T	rs140040426	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	KCNH4-153	NM_012285	exon8	c.G1353A	p.A451A	CTTCTCCGCGTCG	.	220.0	62.0	114.0	0.0	C|1.000;T|0.000	Atlas-SNP
AATK	9625	hgsc.bcm.edu	37	17	79093270	79093271	+	In_Frame_Ins	INS	-	-	GGGCGT	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	AATK-933	NM_001080395	exon13	c.3994_3995insACGCCC	p.A1332delinsTPA	.	.	94.0	18.0	12.0	0.0	.	Atlas-Indel
LAMA1	284217	hgsc.bcm.edu	37	18	7023307	7023307	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	LAMA1-149	NM_005559	exon19	c.G2557A	p.G853S	CGTTGCCGCTGCA	.	177.0	37.0	114.0	0.0	.	Atlas-SNP
DSC2	1824	hgsc.bcm.edu	37	18	28651720	28651720	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	DSC2-517	NM_004949	exon13	c.C1976A	p.S659Y	ACACTAGACATGC	.	234.0	54.0	163.0	0.0	.	Atlas-SNP
SBNO2	22904	hgsc.bcm.edu	37	19	1127619	1127619	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	.	NM_001100122	exon2	c.C254T	p.P85L	GTGGAGGGGGCAG	.	116.0	39.0	69.0	0.0	.	Atlas-SNP
ATP13A1	57130	hgsc.bcm.edu	37	19	19764811	19764811	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	ATP13A1-138	NM_020410	exon14	c.C1956T	p.A652A	CTTCACGGCCGCG	.	42.0	13.0	48.0	0.0	.	Atlas-SNP
NPHS1	4868	hgsc.bcm.edu	37	19	36342537	36342537	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	NPHS1-49	NM_004646	exon2	c.G96A	p.R32R	GAAGCCCCGGGGA	.	307.0	61.0	173.0	0.0	.	Atlas-SNP
TSEN34	79042	hgsc.bcm.edu	37	19	54695770	54695770	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	TSEN34-90	NM_001077446	exon2	c.G442A	p.D148N	AAAGAGGATGAGA	.	153.0	13.0	89.0	0.0	.	Atlas-SNP
KIRREL	55243	hgsc.bcm.edu	37	1	158058203	158058203	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	KIRREL-91	NM_018240	exon8	c.C1003T	p.P335S	GGGAATCCCCCCC	.	189.0	40.0	170.0	0.0	.	Atlas-SNP
SELE	6401	hgsc.bcm.edu	37	1	169697005	169697005	+	Missense_Mutation	SNP	A	A	G	rs199700651		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	SELE-95	NM_000450	exon9	c.T1343C	p.I448T	TCTCCAATAGGGG	.	124.0	32.0	83.0	0.0	A|0.999;G|0.001	Atlas-SNP
MTR	4548	hgsc.bcm.edu	37	1	237060314	237060314	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	MTR-92	NM_000254	exon32	c.T3607A	p.L1203I	ATTAGGTTAACAG	.	90.0	9.0	78.0	0.0	.	Atlas-SNP
OPRL1	4987	hgsc.bcm.edu	37	20	62724242	62724242	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	OPRL1-69	NM_001200019	exon4	c.C169T	p.L57F	GTGGGGCTCTACC	.	163.0	29.0	107.0	0.0	.	Atlas-SNP
FAM19A5	25817	hgsc.bcm.edu	37	22	49042499	49042499	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	FAM19A5-90	NM_015381	exon2	c.G182A	p.C61Y	CCCGCTGTGCGTG	.	211.0	72.0	52.0	0.0	.	Atlas-SNP
RMDN2	151393	hgsc.bcm.edu	37	2	38216713	38216713	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	.	NM_001170793	exon5	c.A386T	p.E129V	TATCTGAGTTTGA	.	37.0	7.0	38.0	0.0	.	Atlas-SNP
ZC3H6	376940	hgsc.bcm.edu	37	2	113079374	113079374	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	ZC3H6-93	NM_198581	exon8	c.T1018C	p.Y340H	AAATGTTACCAGG	.	126.0	33.0	114.0	0.0	.	Atlas-SNP
ABCB11	8647	hgsc.bcm.edu	37	2	169853195	169853195	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	ABCB11-139	NM_003742	exon6	c.A427G	p.S143G	AGTAACTGGCAAA	.	81.0	20.0	91.0	0.0	.	Atlas-SNP
FN1	2335	hgsc.bcm.edu	37	2	216299458	216299458	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	FN1-584	NM_212476	exon2	c.G238A	p.G80R	TTCCTCCATAACA	.	135.0	19.0	75.0	0.0	.	Atlas-SNP
PLXNA1	5361	hgsc.bcm.edu	37	3	126739102	126739102	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	PLXNA1-93	NM_032242	exon20	c.G3953A	p.G1318D	GTGCCGGCATCCC	.	126.0	41.0	119.0	0.0	.	Atlas-SNP
CLCN2	1181	hgsc.bcm.edu	37	3	184072697	184072697	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	CLCN2-90	NM_004366	exon13	c.T1391G	p.V464G	CCAATGACAAAGA	.	473.0	129.0	478.0	1.0	.	Atlas-SNP
CRIPAK	285464	hgsc.bcm.edu	37	4	1388726	1388726	+	Missense_Mutation	SNP	T	T	C	rs199689156	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	CRIPAK-90	NM_175918	exon1	c.T427C	p.C143R	TGCCCATGCGGAG	.	69.0	12.0	21.0	0.0	T|0.980;C|0.020	Atlas-SNP
AFP	174	hgsc.bcm.edu	37	4	74313330	74313330	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	AFP-91	NM_001134	exon8	c.G995A	p.R332K	TAAACAGGTTTTT	.	109.0	29.0	132.0	0.0	.	Atlas-SNP
CXCL9	4283	hgsc.bcm.edu	37	4	76926002	76926002	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	CXCL9-227	NM_002416	exon3	c.C236G	p.S79X	TCTGCTGAATCTG	.	35.0	10.0	60.0	0.0	.	Atlas-SNP
KIAA1109	84162	hgsc.bcm.edu	37	4	123201033	123201033	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	KIAA1109-80	NM_015312	exon49	c.A8695G	p.I2899V	ATCAGTATCAACA	.	109.0	39.0	92.0	0.0	.	Atlas-SNP
CCRN4L	25819	hgsc.bcm.edu	37	4	139966424	139966424	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	CCRN4L-91	NM_012118	exon3	c.G1092A	p.W364X	TACCTGGAAGATC	.	176.0	51.0	167.0	0.0	.	Atlas-SNP
SMARCA5	8467	hgsc.bcm.edu	37	4	144469148	144469148	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	SMARCA5-227	NM_003601	exon22	c.A2840G	p.Y947C	AAAACTATACTGA	.	65.0	11.0	91.0	0.0	.	Atlas-SNP
ANKH	56172	hgsc.bcm.edu	37	5	14758635	14758635	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	ANKH-91	NM_054027	exon3	c.G386A	p.R129K	GCCCTTCTCGTCT	.	92.0	19.0	91.0	0.0	.	Atlas-SNP
BDP1	55814	hgsc.bcm.edu	37	5	70819810	70819810	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	BDP1-92	NM_018429	exon25	c.T5432G	p.L1811R	TTGCCCTGGATGG	.	136.0	35.0	157.0	0.0	.	Atlas-SNP
ANKRD34B	340120	hgsc.bcm.edu	37	5	79855316	79855316	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	ANKRD34B-69	NM_001004441	exon5	c.G523C	p.D175H	ACCCATCTATATC	.	71.0	25.0	57.0	0.0	.	Atlas-SNP
DPCR1	135656	hgsc.bcm.edu	37	6	30917535	30917535	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	DPCR1-90	NM_080870	exon2	c.G1294A	p.E432K	GCCAACGAGAACA	.	252.0	68.0	231.0	0.0	.	Atlas-SNP
MTRF1L	54516	hgsc.bcm.edu	37	6	153323806	153323806	+	Silent	SNP	A	A	G	rs3818126	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	MTRF1L-90	NM_001114184	exon1	c.T15C	p.V5V	CCACAGAACCCGG	.	12.0	4.0	6.0	0.0	A|0.800;G|0.200	Atlas-SNP
SGK1	6446	hgsc.bcm.edu	37	6	134494667	134494669	+	In_Frame_Del	DEL	GAC	GAC	-	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	GAC	GAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	SGK1-981	NM_005627	exon4	c.265_267del	p.89_89del	.	.	102.0	16.0	69.0	0.0	.	Atlas-Indel
ZNF212	7988	hgsc.bcm.edu	37	7	148951008	148951008	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	ZNF212-91	NM_012256	exon5	c.G990A	p.Q330Q	GCAGCAGCTGGCC	.	78.0	19.0	70.0	0.0	.	Atlas-SNP
SP8	221833	hgsc.bcm.edu	37	7	20824941	20824943	+	In_Frame_Del	DEL	GCC	GCC	-	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	GCC	GCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	SP8-91	NM_182700	exon2	c.494_496del	p.165_166del	.	.	57.0	33.0	11.0	0.0	.	Atlas-Indel
FBXO16	157574	hgsc.bcm.edu	37	8	28309857	28309857	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	FBXO16-227	NM_001258211	exon5	c.C608T	p.A203V	GGAAGTGCTTTCT	.	116.0	23.0	131.0	0.0	.	Atlas-SNP
SEC16A	9919	hgsc.bcm.edu	37	9	139360883	139360883	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	.	NM_014866	exon7	c.G3961A	p.D1321N	GAGGATCGTACCT	.	183.0	40.0	100.0	0.0	.	Atlas-SNP
ARHGAP6	395	hgsc.bcm.edu	37	X	11204435	11204435	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	ARHGAP6-227	NM_013423	exon5	c.T585G	p.D195E	TTTCTTATCTCTG	.	80.0	32.0	123.0	0.0	.	Atlas-SNP
ATP6AP2	10159	hgsc.bcm.edu	37	X	40458870	40458870	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	ATP6AP2-130	NM_005765	exon7	c.G615T	p.K205N	AGCCAAGGATCAT	.	43.0	4.0	71.0	0.0	.	Atlas-SNP
