Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Algorithm
NET1	10276	hgsc.bcm.edu	37	10	5498113	5498113	+	Missense_Mutation	SNP	C	C	T	rs139037982		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	NET1-290	NM_005863	exon9	c.C1099T	p.R367W	AACGAACGGCACT	.	103.0	46.0	69.0	0.0	C|1.000;T|0.000	Atlas-SNP
OTUD1	220213	hgsc.bcm.edu	37	10	23729556	23729556	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	OTUD1-433	NM_001145373	exon1	c.G1170C	p.V390V	GAATGTGAATATC	.	114.0	51.0	108.0	0.0	.	Atlas-SNP
ARHGAP21	57584	hgsc.bcm.edu	37	10	24873649	24873649	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ARHGAP21-235	NM_020824	exon26	c.C5569T	p.R1857C	GTAGGCGTTCCCT	.	244.0	102.0	196.0	0.0	.	Atlas-SNP
IPMK	253430	hgsc.bcm.edu	37	10	59956132	59956132	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	IPMK-228	NM_152230	exon6	c.C956T	p.A319V	TGACGCGCATACA	.	83.0	34.0	56.0	0.0	.	Atlas-SNP
TET1	80312	hgsc.bcm.edu	37	10	70426853	70426853	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	TET1,NS,carcinoma,0	TET1-663	NM_030625	exon7	c.C4513T	p.R1505C	CGGCAGCGTACAG	.	138.0	60.0	109.0	0.0	.	Atlas-SNP
CDH23	64072	hgsc.bcm.edu	37	10	73551036	73551036	+	Missense_Mutation	SNP	G	G	A	rs201887949		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CDH23-563	NM_022124	exon45	c.G6197A	p.R2066Q	ACAACCGGCCCAC	.	207.0	35.0	169.0	0.0	G|0.998;A|0.002	Atlas-SNP
CDH23	64072	hgsc.bcm.edu	37	10	73560424	73560424	+	Missense_Mutation	SNP	G	G	A	rs199903227		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CDH23-563	NM_001171933	exon6	c.G674A	p.R225Q	TGGACCGGGAGAA	.	155.0	61.0	172.0	0.0	.	Atlas-SNP
DLG5	9231	hgsc.bcm.edu	37	10	79603319	79603319	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	DLG5-98	NM_004747	exon6	c.G1010A	p.R337H	TCCAGGCGGCTCA	.	311.0	155.0	277.0	1.0	.	Atlas-SNP
GRID1	2894	hgsc.bcm.edu	37	10	87898579	87898579	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	GRID1-142	NM_017551	exon4	c.C723T	p.N241N	TACCTCGTTGATG	.	170.0	81.0	130.0	0.0	.	Atlas-SNP
PI4K2A	55361	hgsc.bcm.edu	37	10	99426276	99426276	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PI4K2A-226	NM_018425	exon7	c.C1166G	p.S389W	AGATATCGGACCC	.	56.0	15.0	56.0	0.0	.	Atlas-SNP
CNNM1	26507	hgsc.bcm.edu	37	10	101124242	101124242	+	Silent	SNP	C	C	T	rs142898303		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CNNM1-68	NM_020348	exon5	c.C2097T	p.G699G	CTATGGCGTCCCA	.	83.0	38.0	61.0	0.0	C|1.000;T|0.000	Atlas-SNP
FBXW4	6468	hgsc.bcm.edu	37	10	103371420	103371420	+	Missense_Mutation	SNP	G	G	A	rs140286143		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FBXW4-226	NM_022039	exon8	c.C1084T	p.R362W	ACAGCCGTACAAC	.	206.0	82.0	204.0	0.0	G|1.000;A|0.000	Atlas-SNP
C10orf76	79591	hgsc.bcm.edu	37	10	103716388	103716388	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	C10orf76-90	NM_024541	exon22	c.C1671T	p.R557R	GTGCATGCGGATA	.	203.0	35.0	150.0	0.0	.	Atlas-SNP
COL17A1	1308	hgsc.bcm.edu	37	10	105803593	105803593	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	COL17A1-95	NM_000494	exon34	c.C2424T	p.I808I	AGTCACGATCTTG	.	209.0	93.0	189.0	0.0	.	Atlas-SNP
VWA2	340706	hgsc.bcm.edu	37	10	116049187	116049187	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	VWA2-156	NM_001272046	exon12	c.C2061T	p.H687H	GATCCACGTGGCA	.	265.0	38.0	240.0	0.0	.	Atlas-SNP
FANK1	92565	hgsc.bcm.edu	37	10	127585221	127585221	+	Nonsense_Mutation	SNP	C	C	T	rs202109621		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FANK1-91	NM_145235	exon1	c.C10T	p.Q4X	GAGCCCCAGAGTA	.	115.0	6.0	20.0	0.0	.	Atlas-SNP
TAF3	83860	hgsc.bcm.edu	37	10	8007680	8007682	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	AGA	AGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TAF3-69	NM_031923	exon3	c.2206_2208del	p.736_736del	.	.	159.0	65.0	120.0	0.0	.	Atlas-Indel
RUFY2	55680	hgsc.bcm.edu	37	10	70105818	70105820	+	In_Frame_Del	DEL	TTT	TTT	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	TTT	TTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	RUFY2-91	NM_017987	exon17	c.1727_1729del	p.576_577del	.	.	64.0	27.0	56.0	0.0	.	Atlas-Indel
TNKS2	80351	hgsc.bcm.edu	37	10	93601946	93601946	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TNKS2-541	NM_025235	exon16	c.1856delC	p.T619fs	.	.	105.0	53.0	76.0	0.0	.	Atlas-Indel
ADRA2A	150	hgsc.bcm.edu	37	10	112838325	112838327	+	In_Frame_Del	DEL	GGC	GGC	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	GGC	GGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ADRA2A-90	NM_000681	exon1	c.570_572del	p.190_191del	.	.	76.0	15.0	17.0	0.0	.	Atlas-Indel
SEC23IP	11196	hgsc.bcm.edu	37	10	121691801	121691803	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	AAG	AAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SEC23IP-93	NM_007190	exon16	c.2728_2730del	p.910_910del	.	.	107.0	32.0	79.0	0.0	.	Atlas-Indel
KIAA1462	57608	hgsc.bcm.edu	37	10	30316849	30316852	+	Frame_Shift_Del	DEL	TGTT	TGTT	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	TGTT	TGTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	KIAA1462-72	NM_020848	exon3	c.2226_2229del	p.742_743del	.	.	231.0	65.0	189.0	0.0	.	Pindel
PIDD	55367	hgsc.bcm.edu	37	11	800997	800997	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PIDD-205	NM_145886	exon10	c.C1754T	p.T585I	AAGTGTGTGACCT	.	101.0	8.0	158.0	0.0	.	Atlas-SNP
OR56A3	390083	hgsc.bcm.edu	37	11	5969261	5969261	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	OR56A3-68	NM_001003443	exon1	c.G685T	p.V229L	CGAGCTGTGCTGA	.	90.0	71.0	96.0	0.0	.	Atlas-SNP
FAM160A2	84067	hgsc.bcm.edu	37	11	6232915	6232915	+	Missense_Mutation	SNP	G	G	A	rs201012137		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FAM160A2-92	NM_032127	exon12	c.C2782T	p.R928C	CTTGGCGTTCAGG	.	54.0	9.0	78.0	0.0	G|1.000;A|0.000	Atlas-SNP
NAV2	89797	hgsc.bcm.edu	37	11	19955447	19955447	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	NAV2-96	NM_001111018	exon7	c.A1465G	p.K489E	AGTGCCAAGAAGG	.	24.0	20.0	32.0	0.0	.	Atlas-SNP
LGALS12	85329	hgsc.bcm.edu	37	11	63276041	63276041	+	Missense_Mutation	SNP	C	C	T	rs144263194	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	LGALS12-92	NM_001142536	exon2	c.C152T	p.T51M	ATGTCACGACGAT	.	70.0	56.0	139.0	0.0	C|1.000;T|0.000	Atlas-SNP
LTBP3	4054	hgsc.bcm.edu	37	11	65319519	65319519	+	Silent	SNP	G	G	A	rs200551731		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	LTBP3-91	NM_021070	exon8	c.C1455T	p.D485D	TGGCCCGTCAGGG	.	132.0	110.0	185.0	1.0	G|1.000;A|0.000	Atlas-SNP
RHOD	29984	hgsc.bcm.edu	37	11	66838933	66838933	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	RHOD-659	NM_014578	exon5	c.G493A	p.A165T	GTGGGCGCGGTGG	.	76.0	6.0	40.0	0.0	.	Atlas-SNP
FAT3	120114	hgsc.bcm.edu	37	11	92616519	92616519	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FAT3-73	NM_001008781	exon23	c.C12897T	p.C4299C	CGACTGCGACTCC	.	162.0	128.0	138.0	0.0	.	Atlas-SNP
ATM	472	hgsc.bcm.edu	37	11	108138056	108138056	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ATM-3419	NM_000051	exon17	c.C2625T	p.S875S	AGAGAGCCAAAGT	.	74.0	14.0	129.0	0.0	.	Atlas-SNP
TIMM8B	26521	hgsc.bcm.edu	37	11	111956053	111956053	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TIMM8B-90	NM_012459	exon2	c.G263A	p.R88Q	GCAAACCGACTGG	.	96.0	81.0	148.0	1.0	.	Atlas-SNP
CD3D	915	hgsc.bcm.edu	37	11	118210583	118210583	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CD3D-91	NM_000732	exon3	c.G313A	p.A105T	TGCCAGCCACGGT	.	161.0	134.0	235.0	0.0	.	Atlas-SNP
TEAD1	7003	hgsc.bcm.edu	37	11	12923632	12923632	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TEAD1-90	NM_021961	exon10	c.844delC	p.Q282fs	.	.	140.0	25.0	180.0	0.0	.	Atlas-Indel
TNKS1BP1	85456	hgsc.bcm.edu	37	11	57077118	57077119	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TNKS1BP1-91	NM_033396	exon6	c.3067_3068del	p.1023_1023del	.	.	52.0	36.0	64.0	0.0	.	Atlas-Indel
MEN1	4221	hgsc.bcm.edu	37	11	64572092	64572093	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MEN1-3017	NM_130800	exon10	c.1562_1563insC	p.R521fs	.	.	34.0	17.0	13.0	0.0	.	Atlas-Indel
ARAP1	116985	hgsc.bcm.edu	37	11	72404518	72404518	+	Splice_Site	DEL	G	G	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ARAP1-91	NM_001135190	exon27	c.2891-2C>-	.	.	.	109.0	85.0	161.0	0.0	.	Atlas-Indel
C11orf57	55216	hgsc.bcm.edu	37	11	111953573	111953576	+	Frame_Shift_Del	DEL	AAAG	AAAG	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	AAAG	AAAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	C11orf57-155	NM_001082970	exon6	c.755_758del	p.252_253del	.	.	22.0	19.0	31.0	0.0	.	Atlas-Indel
QSER1	79832	hgsc.bcm.edu	37	11	32979554	32979554	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	QSER1-95	NM_001076786	exon8	c.4503delG	p.R1501fs	.	.	101.0	45.0	102.0	0.0	.	Pindel
VWF	7450	hgsc.bcm.edu	37	12	6230433	6230433	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	VWF-163	NM_000552	exon3	c.G127A	p.V43I	TGTTGACGAAGTC	.	266.0	131.0	225.0	0.0	.	Atlas-SNP
KIAA1467	57613	hgsc.bcm.edu	37	12	13229066	13229066	+	Missense_Mutation	SNP	C	C	T	rs142863695	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	KIAA1467-92	NM_020853	exon11	c.C1631T	p.T544M	CAGTGACGGCTTC	.	186.0	84.0	174.0	0.0	C|0.999;T|0.001	Atlas-SNP
CCNT1	904	hgsc.bcm.edu	37	12	49086936	49086936	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CCNT1-418	NM_001240	exon9	c.T2061C	p.Y687Y	GTCACTATAAGGA	.	226.0	84.0	149.0	0.0	.	Atlas-SNP
ADCY6	112	hgsc.bcm.edu	37	12	49170332	49170332	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ADCY6-90	NM_015270	exon6	c.C1414T	p.R472C	CCACGCGCATGTT	.	95.0	37.0	85.0	0.0	.	Atlas-SNP
KRT76	51350	hgsc.bcm.edu	37	12	53170942	53170942	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	KRT76-154	NM_015848	exon1	c.G134A	p.G45D	CTGAAGCCACAGG	.	124.0	56.0	124.0	0.0	.	Atlas-SNP
SOAT2	8435	hgsc.bcm.edu	37	12	53497419	53497419	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SOAT2-91	NM_003578	exon1	c.C58T	p.R20W	GGGGAGCGGGAGC	.	101.0	8.0	40.0	0.0	.	Atlas-SNP
MAP3K12	7786	hgsc.bcm.edu	37	12	53876621	53876621	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MAP3K12-604	NM_001193511	exon11	c.C1966T	p.R656W	CCCCCCGGCCCCG	.	54.0	8.0	26.0	0.0	.	Atlas-SNP
KIF5A	3798	hgsc.bcm.edu	37	12	57963112	57963112	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	KIF5A-517	NM_004984	exon10	c.C893T	p.T298M	GCCGGACGACTAT	.	156.0	69.0	120.0	0.0	.	Atlas-SNP
GNPTAB	79158	hgsc.bcm.edu	37	12	102158675	102158675	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	GNPTAB-92	NM_024312	exon13	c.C2020T	p.R674C	GGAAGCGTTTTTC	.	35.0	16.0	23.0	0.0	.	Atlas-SNP
P2RX7	5027	hgsc.bcm.edu	37	12	121622497	121622497	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	P2RX7-268	NM_002562	exon13	c.C1680A	p.S560S	CGGCTCCCAGGAC	.	132.0	41.0	184.0	0.0	.	Atlas-SNP
KNTC1	9735	hgsc.bcm.edu	37	12	123089580	123089580	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	KNTC1-543	NM_014708	exon50	c.G5332A	p.E1778K	CTCTACGAACATC	.	95.0	50.0	89.0	0.0	.	Atlas-SNP
ARL6IP4	51329	hgsc.bcm.edu	37	12	123466588	123466588	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ARL6IP4-90	NM_016638	exon4	c.G866A	p.R289H	TCATCCGCAAGGT	.	114.0	12.0	167.0	0.0	.	Atlas-SNP
RIMBP2	23504	hgsc.bcm.edu	37	12	130912861	130912861	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	RIMBP2-142	NM_015347	exon12	c.G2224A	p.E742K	GGTACTCGTCTCC	.	74.0	68.0	106.0	0.0	.	Atlas-SNP
EP400	57634	hgsc.bcm.edu	37	12	132504663	132504663	+	Silent	SNP	G	G	A	rs150248915	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	EP400-520	NM_015409	exon22	c.G4347A	p.P1449P	TCACCCGCCCCGG	.	80.0	62.0	22.0	0.0	G|0.999;A|0.001	Atlas-SNP
FKBP11	51303	hgsc.bcm.edu	37	12	49318027	49318028	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FKBP11-226	NM_001143782	exon4	c.296_297del	p.99_99del	.	.	158.0	69.0	121.0	0.0	.	Atlas-Indel
SMARCC2	6601	hgsc.bcm.edu	37	12	56559113	56559113	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SMARCC2-229	NM_003075	exon26	c.3129delT	p.P1043fs	.	.	36.0	16.0	42.0	0.0	.	Atlas-Indel
NACA	4666	hgsc.bcm.edu	37	12	57113563	57113564	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	NACA-254	NM_001113203	exon3	c.1751_1752del	p.584_584del	.	.	104.0	42.0	82.0	0.0	.	Atlas-Indel
TAC3	6866	hgsc.bcm.edu	37	12	57409529	57409530	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TAC3-92	NM_013251	exon2	c.53_54del	p.18_18del	.	.	109.0	52.0	88.0	0.0	.	Atlas-Indel
BEST3	144453	hgsc.bcm.edu	37	12	70049362	70049362	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	BEST3-248	NM_152439	exon6	c.694delA	p.R232fs	.	.	54.0	17.0	42.0	0.0	.	Atlas-Indel
ZDHHC17	23390	hgsc.bcm.edu	37	12	77222254	77222255	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	NM_015336	exon10	c.1125_1126insT	p.F375fs	.	.	108.0	41.0	114.0	0.0	.	Atlas-Indel
ATP2A2	488	hgsc.bcm.edu	37	12	110784062	110784064	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	CTC	CTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ATP2A2-94	NM_170665	exon20	c.2915_2917del	p.972_973del	.	.	266.0	107.0	199.0	0.0	.	Atlas-Indel
CEP290	80184	hgsc.bcm.edu	37	12	88508192	88508210	+	Frame_Shift_Del	DEL	CTTACATTAACTAGTCTTT	CTTACATTAACTAGTCTTT	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	CTTACATTAACTAGTCTTT	CTTACATTAACTAGTCTTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CEP290-96	NM_025114	exon20	c.2040_2052del	p.680_684del	.	.	47.0	10.0	46.0	0.0	.	Pindel
MLEC	9761	hgsc.bcm.edu	37	12	121132922	121132923	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MLEC-91	NM_014730	exon4	c.615_616del	p.205_206del	.	.	62.0	34.0	120.0	0.0	.	Pindel
ATP12A	479	hgsc.bcm.edu	37	13	25262636	25262636	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ATP12A-137	NM_001185085	exon4	c.C408T	p.S136S	CTCCAGCGACAAG	.	37.0	32.0	62.0	0.0	.	Atlas-SNP
FREM2	341640	hgsc.bcm.edu	37	13	39264775	39264775	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FREM2-100	NM_207361	exon1	c.G3294T	p.L1098L	CTCCCTGAATGAT	.	22.0	6.0	40.0	0.0	.	Atlas-SNP
LHFP	10186	hgsc.bcm.edu	37	13	39952603	39952603	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	LHFP-683	NM_005780	exon3	c.G446A	p.R149Q	GTCTGCCGGACTT	.	61.0	46.0	80.0	0.0	.	Atlas-SNP
SCEL	8796	hgsc.bcm.edu	37	13	78211275	78211275	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SCEL-95	NM_001160706	exon28	c.A1658T	p.Y553F	ATGGATATCAGGA	.	42.0	7.0	39.0	0.0	.	Atlas-SNP
ABCC4	10257	hgsc.bcm.edu	37	13	95830011	95830011	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ABCC4-515	NM_001105515	exon13	c.C1677T	p.D559D	AGGATCGTCCAGG	.	127.0	35.0	172.0	0.0	.	Atlas-SNP
COL4A1	1282	hgsc.bcm.edu	37	13	110804812	110804812	+	Silent	SNP	C	C	T	rs146638269	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	COL4A1-654	NM_001845	exon51	c.G4797A	p.A1599A	GGGGGACGCCAGG	.	89.0	5.0	142.0	0.0	C|1.000;T|0.000	Atlas-SNP
OR4Q3	441669	hgsc.bcm.edu	37	14	20216029	20216029	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	OR4Q3-71	NM_172194	exon1	c.C443T	p.A148V	TTCTTGCCTGCTG	.	342.0	26.0	508.0	0.0	.	Atlas-SNP
OR4K2	390431	hgsc.bcm.edu	37	14	20345046	20345046	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	OR4K2-72	NM_001005501	exon1	c.C620T	p.A207V	TAATTGCGTTGTC	.	206.0	57.0	254.0	0.0	.	Atlas-SNP
MIS18BP1	55320	hgsc.bcm.edu	37	14	45675328	45675328	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MIS18BP1-90	NM_018353	exon15	c.A3198T	p.K1066N	ATTACTTTTATGA	.	182.0	145.0	242.0	1.0	.	Atlas-SNP
ELMSAN1	91748	hgsc.bcm.edu	37	14	74193665	74193665	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	NM_001043318	exon6	c.G2173A	p.V725M	AGCCCACGTTGAT	.	137.0	40.0	283.0	0.0	.	Atlas-SNP
VSX2	338917	hgsc.bcm.edu	37	14	74711911	74711911	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	VSX2-69	NM_182894	exon3	c.T499G	p.F167V	AAGGCATTCAACG	.	112.0	9.0	142.0	0.0	.	Atlas-SNP
TDP1	55775	hgsc.bcm.edu	37	14	90450919	90450919	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TDP1-92	NM_001008744	exon8	c.C944T	p.S315L	GAGAGTCGCCAAC	.	37.0	30.0	52.0	0.0	.	Atlas-SNP
TDRD9	122402	hgsc.bcm.edu	37	14	104481118	104481118	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TDRD9-70	NM_153046	exon21	c.T2163C	p.V721V	GCATGTTGATTCT	.	48.0	39.0	57.0	0.0	.	Atlas-SNP
FMN1	342184	hgsc.bcm.edu	37	15	33358991	33358991	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FMN1-23	NM_001103184	exon1	c.G1095A	p.S365S	CCTGGGCGACTCA	.	72.0	10.0	124.0	0.0	.	Atlas-SNP
JMJD7-PLA2G4B	8681	hgsc.bcm.edu	37	15	42137956	42137956	+	Missense_Mutation	SNP	G	G	A	rs150220260		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	JMJD7-PLA2G4B-135	NM_005090	exon20	c.G2171A	p.R724H	AGTCCCGCATCTG	.	35.0	26.0	65.0	0.0	G|1.000;A|0.000	Atlas-SNP
DENND4A	10260	hgsc.bcm.edu	37	15	65995235	65995235	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	DENND4A-229	NM_001144823	exon16	c.G2199A	p.L733L	CATGGGCAAAGGG	.	34.0	31.0	67.0	0.0	.	Atlas-SNP
FBXO22	26263	hgsc.bcm.edu	37	15	76225297	76225297	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FBXO22-658	NM_147188	exon7	c.G1066A	p.G356S	TTATTCGGCTTCT	.	98.0	23.0	98.0	0.0	.	Atlas-SNP
C15orf40	123207	hgsc.bcm.edu	37	15	83679055	83679055	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	C15orf40-91	NM_001160113	exon2	c.G172A	p.D58N	TAGGATCAACTGC	.	183.0	153.0	262.0	0.0	.	Atlas-SNP
ALPK3	57538	hgsc.bcm.edu	37	15	85360157	85360157	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ALPK3-337	NM_020778	exon1	c.C80T	p.P27L	TGGTGCCAGGAAG	.	220.0	21.0	212.0	0.0	.	Atlas-SNP
ADAMTS17	170691	hgsc.bcm.edu	37	15	100594247	100594247	+	Missense_Mutation	SNP	G	G	A	rs143817747	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ADAMTS17-228	NM_139057	exon16	c.C2150T	p.S717L	TTACCCGAGTCTT	.	57.0	43.0	65.0	0.0	G|0.999;A|0.001	Atlas-SNP
OR4F15	390649	hgsc.bcm.edu	37	15	102358851	102358851	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	OR4F15-68	NM_001001674	exon1	c.C462T	p.I154I	CCTTATCCACTCA	.	187.0	53.0	247.0	0.0	.	Atlas-SNP
ITFG3	83986	hgsc.bcm.edu	37	16	314146	314146	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ITFG3-90	NM_032039	exon11	c.C1320T	p.H440H	CCTCCACGAGCTG	.	28.0	23.0	36.0	0.0	.	Atlas-SNP
PRSS41	360226	hgsc.bcm.edu	37	16	2854956	2854956	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	NM_001135086	exon5	c.G780C	p.L260L	TGGACTGTGGTAT	.	229.0	174.0	445.0	0.0	.	Atlas-SNP
PKMYT1	9088	hgsc.bcm.edu	37	16	3024609	3024609	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PKMYT1-765	NM_001258451	exon5	c.C894T	p.H298H	CCCACCGTGGGGC	.	162.0	122.0	277.0	1.0	.	Atlas-SNP
ZNF263	10127	hgsc.bcm.edu	37	16	3340332	3340332	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ZNF263-94	NM_005741	exon6	c.G1826T	p.G609V	TTTGTGGGGAAAA	.	60.0	13.0	95.0	0.0	.	Atlas-SNP
ERCC4	2072	hgsc.bcm.edu	37	16	14041727	14041727	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ERCC4-665	NM_005236	exon11	c.G2274A	p.L758L	GCTTCTGATTGAG	.	79.0	8.0	76.0	0.0	.	Atlas-SNP
ABCC1	4363	hgsc.bcm.edu	37	16	16184382	16184382	+	Missense_Mutation	SNP	G	G	A	rs45517537		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ABCC1-94	NM_004996	exon19	c.G2581A	p.A861T	GACGGCGCCTTCG	.	64.0	54.0	130.0	0.0	G|1.000;A|0.000	Atlas-SNP
COG7	91949	hgsc.bcm.edu	37	16	23415033	23415033	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	COG7-90	NM_153603	exon13	c.G1785A	p.L595L	AATAAGCAACAGC	.	139.0	14.0	191.0	0.0	.	Atlas-SNP
TAOK2	9344	hgsc.bcm.edu	37	16	29997670	29997670	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TAOK2-521	NM_004783	exon16	c.C2077T	p.R693W	GAGCTGCGGCAGC	.	88.0	6.0	30.0	0.0	.	Atlas-SNP
PRR14	78994	hgsc.bcm.edu	37	16	30664048	30664048	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PRR14-90	NM_024031	exon4	c.G199A	p.V67M	GTCCCCGTGGTGC	.	175.0	47.0	242.0	0.0	.	Atlas-SNP
ARMC5	79798	hgsc.bcm.edu	37	16	31473937	31473937	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ARMC5-24	NM_001105247	exon3	c.C1069T	p.R357C	CTATGTCGTGAGG	.	39.0	34.0	67.0	0.0	.	Atlas-SNP
PHKB	5257	hgsc.bcm.edu	37	16	47697593	47697593	+	Missense_Mutation	SNP	G	G	A	rs56010117	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PHKB-154	NM_001031835	exon25	c.G2263A	p.V755I	GGTACCGTTTCTG	.	50.0	33.0	68.0	0.0	G|0.999;A|0.001	Atlas-SNP
NKD1	85407	hgsc.bcm.edu	37	16	50667165	50667165	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	NKD1-226	NM_033119	exon10	c.C886T	p.R296C	CGATCTCGCTCCC	.	221.0	181.0	312.0	1.0	.	Atlas-SNP
DOK4	55715	hgsc.bcm.edu	37	16	57507532	57507532	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	DOK4-227	NM_018110	exon8	c.C855T	p.S285S	AGCATAGCTGGAG	.	157.0	35.0	224.0	0.0	.	Atlas-SNP
CDH8	1006	hgsc.bcm.edu	37	16	61761065	61761065	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CDH8-161	NM_001796	exon9	c.A1469G	p.N490S	TTGTCATTGACAT	.	131.0	105.0	161.0	1.0	.	Atlas-SNP
LRRC36	55282	hgsc.bcm.edu	37	16	67380244	67380244	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	LRRC36-90	NM_018296	exon3	c.C284T	p.P95L	TACAACCGTTACC	.	72.0	59.0	110.0	0.0	.	Atlas-SNP
C16orf86	388284	hgsc.bcm.edu	37	16	67701268	67701268	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	NM_001012984	exon2	c.C172T	p.R58C	GACCAGCGCCCAG	.	156.0	135.0	193.0	1.0	.	Atlas-SNP
VPS4A	27183	hgsc.bcm.edu	37	16	69352767	69352767	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	NM_013245	exon5	c.G385A	p.V129M	AACGACGTGGCCG	.	48.0	38.0	64.0	0.0	.	Atlas-SNP
MBTPS1	8720	hgsc.bcm.edu	37	16	84092913	84092913	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MBTPS1-92	NM_003791	exon21	c.C2825T	p.A942V	CTGGGCGCCGTCT	.	105.0	15.0	155.0	0.0	.	Atlas-SNP
IL17C	27189	hgsc.bcm.edu	37	16	88706470	88706470	+	Missense_Mutation	SNP	G	G	A	rs189692693		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	IL17C-90	NM_013278	exon3	c.G584A	p.R195H	TGCCCCGTTCAGT	.	92.0	10.0	115.0	0.0	G|0.999;A|0.000	Atlas-SNP
CDT1	81620	hgsc.bcm.edu	37	16	88873021	88873021	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CDT1-227	NM_030928	exon7	c.C1061T	p.T354M	CCGCCACGGAGAA	.	218.0	59.0	99.0	0.0	.	Atlas-SNP
DEF8	54849	hgsc.bcm.edu	37	16	90021667	90021667	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	DEF8-68	NM_001242819	exon3	c.G215A	p.R72H	TCTCCCGCCCTGT	.	120.0	13.0	189.0	0.0	.	Atlas-SNP
TVP23A	780776	hgsc.bcm.edu	37	16	10867203	10867203	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	NM_001079512	exon5	c.421delA	p.S141fs	.	.	67.0	36.0	117.0	0.0	.	Pindel
ZZEF1	23140	hgsc.bcm.edu	37	17	3954155	3954155	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ZZEF1-93	NM_015113	exon36	c.C5783T	p.T1928M	CTGCGCGTCTGGG	.	94.0	72.0	110.0	0.0	.	Atlas-SNP
ANKFY1	51479	hgsc.bcm.edu	37	17	4071191	4071191	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ANKFY1-93	NM_001257999	exon25	c.G3518A	p.R1173H	AGAAGACGTCCGC	.	49.0	5.0	70.0	0.0	.	Atlas-SNP
SPNS3	201305	hgsc.bcm.edu	37	17	4348462	4348462	+	Missense_Mutation	SNP	G	G	C	rs141797761	alternate_allele	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SPNS3-153	NM_182538	exon3	c.G401C	p.R134P	CCCCCCGGGTACG	.	93.0	83.0	176.0	1.0	G|1.000;A|0.000	Atlas-SNP
NLRP1	22861	hgsc.bcm.edu	37	17	5436698	5436698	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	NLRP1-274	NM_033007	exon9	c.C2969T	p.A990V	GAAGCCGCCCTCT	.	28.0	25.0	33.0	0.0	.	Atlas-SNP
KIAA0753	9851	hgsc.bcm.edu	37	17	6502594	6502594	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	KIAA0753-90	NM_014804	exon14	c.C2135T	p.S712L	ACTGACGAGCCAT	.	90.0	6.0	111.0	0.0	.	Atlas-SNP
NEURL4	84461	hgsc.bcm.edu	37	17	7224496	7224496	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	NEURL4-46	NM_032442	exon20	c.T3295C	p.S1099P	TGGGGGAAGGAGG	.	113.0	20.0	229.0	0.0	.	Atlas-SNP
TP53	7157	hgsc.bcm.edu	37	17	7578212	7578212	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	TP53,NS,carcinoma,0	TP53-70225	NM_001126114	exon6	c.C637T	p.R213X	TATGTCGAAAAGT	.	132.0	112.0	188.0	0.0	.	Atlas-SNP
KDM6B	23135	hgsc.bcm.edu	37	17	7752034	7752034	+	Missense_Mutation	SNP	G	G	A	rs148573983		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	KDM6B-205	NM_001080424	exon11	c.G2428A	p.V810M	GCCTCCGTGCTGG	.	61.0	48.0	105.0	0.0	G|1.000;A|0.000	Atlas-SNP
MYO15A	51168	hgsc.bcm.edu	37	17	18054476	18054476	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MYO15A-97	NM_016239	exon38	c.C7526T	p.A2509V	CCCCTGCCAAACC	.	72.0	57.0	92.0	0.0	.	Atlas-SNP
SLC13A2	9058	hgsc.bcm.edu	37	17	26800779	26800779	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SLC13A2-90	NM_001145975	exon1	c.G49A	p.V17M	CTGATCGTGTTCT	.	92.0	17.0	161.0	0.0	.	Atlas-SNP
SPAG5	10615	hgsc.bcm.edu	37	17	26919548	26919548	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SPAG5-90	NM_006461	exon3	c.C714T	p.N238N	GAAGGCGTTACTT	.	71.0	58.0	119.0	0.0	.	Atlas-SNP
EFCAB5	374786	hgsc.bcm.edu	37	17	28405430	28405430	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	EFCAB5-70	NM_198529	exon15	c.C2935T	p.R979W	GCCAGGCGGAAAT	.	171.0	147.0	192.0	0.0	.	Atlas-SNP
GSDMA	284110	hgsc.bcm.edu	37	17	38130530	38130530	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	GSDMA-90	NM_178171	exon9	c.C756T	p.D252D	AGGGGACGTACAC	.	76.0	61.0	114.0	0.0	.	Atlas-SNP
TNS4	84951	hgsc.bcm.edu	37	17	38633890	38633890	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TNS4-155	NM_032865	exon13	c.C2098A	p.Q700K	TGACCTGCGAGGC	.	95.0	79.0	156.0	0.0	.	Atlas-SNP
WNT3	7473	hgsc.bcm.edu	37	17	44846089	44846089	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	WNT3-522	NM_030753	exon4	c.A665A	p.Q222Q	TGCGCCCACCAGC	.	137.0	99.0	201.0	1.0	.	Atlas-SNP
CLTC	1213	hgsc.bcm.edu	37	17	57754463	57754463	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CLTC-835	NM_004859	exon17	c.G2710A	p.V904I	AGTCGCGTTGTTG	.	110.0	89.0	142.0	1.0	.	Atlas-SNP
DDX42	11325	hgsc.bcm.edu	37	17	61895428	61895428	+	Silent	SNP	C	C	T	rs145932119		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	DDX42-230	NM_203499	exon18	c.C2487T	p.S829S	GCATAGCGATAGT	.	80.0	9.0	85.0	0.0	C|1.000;T|0.000	Atlas-SNP
TEX2	55852	hgsc.bcm.edu	37	17	62271012	62271012	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TEX2-91	NM_018469	exon4	c.C2083T	p.R695X	TTTCTCGGCCAGT	.	115.0	96.0	168.0	1.0	.	Atlas-SNP
ARSG	22901	hgsc.bcm.edu	37	17	66391298	66391298	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ARSG-91	NM_014960	exon10	c.C1176T	p.S392S	CGTCTCCGAGGTG	.	104.0	83.0	167.0	0.0	.	Atlas-SNP
CPSF4L	642843	hgsc.bcm.edu	37	17	71257098	71257098	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CPSF4L-68	NM_001129885	exon2	c.T128C	p.F43S	GTGAAGAAGTTGC	.	41.0	35.0	104.0	0.0	.	Atlas-SNP
GRIN2C	2905	hgsc.bcm.edu	37	17	72838754	72838754	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	GRIN2C-228	NM_000835	exon13	c.C3522T	p.H1174H	GGAGCCGTGGCTG	.	90.0	22.0	82.0	0.0	.	Atlas-SNP
DNAH17	8632	hgsc.bcm.edu	37	17	76424720	76424720	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	DNAH17-142	NM_173628	exon77	c.C12474T	p.N4158N	CTCTGCGTTGGGG	.	122.0	34.0	226.0	0.0	.	Atlas-SNP
SGSH	6448	hgsc.bcm.edu	37	17	78188920	78188920	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SGSH-91	NM_000199	exon3	c.C267T	p.Y89Y	CAGCCCGTACATC	.	52.0	48.0	58.0	0.0	.	Atlas-SNP
MLX	6945	hgsc.bcm.edu	37	17	40720854	40720856	+	Frame_Shift_Del	DEL	GAT	GAT	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	GAT	GAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MLX-90	NM_198205	exon3	c.80_80del	p.27_27del	.	.	163.0	131.0	303.0	0.0	.	Atlas-Indel
APPBP2	10513	hgsc.bcm.edu	37	17	58556635	58556635	+	Splice_Site	DEL	A	A	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	APPBP2-226	NM_006380	exon5	c.380-2T>-	.	.	.	24.0	18.0	32.0	0.0	.	Atlas-Indel
KCNH6	81033	hgsc.bcm.edu	37	17	61621675	61621675	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	KCNH6-91	NM_030779	exon12	c.2406delG	p.M802fs	.	.	65.0	49.0	119.0	0.0	.	Atlas-Indel
MPRIP	23164	hgsc.bcm.edu	37	17	17046886	17046886	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MPRIP-90	NM_015134	exon9	c.1051delG	p.A351fs	.	.	78.0	43.0	97.0	0.0	.	Pindel
ABCA6	23460	hgsc.bcm.edu	37	17	67125767	67125767	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ABCA6-159	NM_080284	exon7	c.918delA	p.L306fs	.	.	181.0	77.0	203.0	0.0	.	Pindel
LAMA1	284217	hgsc.bcm.edu	37	18	6997824	6997824	+	Missense_Mutation	SNP	C	C	T	rs150510890		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	LAMA1-149	NM_005559	exon33	c.G4723A	p.V1575I	AAAGAACGGCATC	.	110.0	34.0	117.0	0.0	C|1.000;T|0.000	Atlas-SNP
CDH2	1000	hgsc.bcm.edu	37	18	25582999	25582999	+	Missense_Mutation	SNP	C	C	A	rs202045628	alternate_allele	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CDH2-525	NM_001792	exon7	c.G982T	p.G328C	TGTCACCAGTCTC	.	173.0	145.0	271.0	1.0	.	Atlas-SNP
CCDC178	374864	hgsc.bcm.edu	37	18	30672841	30672841	+	Missense_Mutation	SNP	G	G	A	rs148945908		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	NM_198995	exon20	c.C2158T	p.R720C	CTAAACGCAGATT	.	43.0	33.0	89.0	0.0	G|1.000;A|0.000	Atlas-SNP
ASXL3	80816	hgsc.bcm.edu	37	18	31250678	31250678	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ASXL3-49	NM_030632	exon6	c.G519A	p.M173I	CTCAATGATGGTA	.	87.0	74.0	141.0	1.0	.	Atlas-SNP
ASXL3	80816	hgsc.bcm.edu	37	18	31324011	31324011	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ASXL3-49	NM_030632	exon12	c.C4199G	p.S1400C	GTGATTCTGTAGC	.	137.0	8.0	150.0	0.0	.	Atlas-SNP
SLC14A1	6563	hgsc.bcm.edu	37	18	43319234	43319234	+	Missense_Mutation	SNP	G	G	A	rs201451018	alternate_allele	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SLC14A1-515	NM_015865	exon7	c.G770A	p.C257Y	TCATGTGCCTGCA	.	88.0	8.0	145.0	0.0	G|0.999;T|0.001	Atlas-SNP
LOXHD1	125336	hgsc.bcm.edu	37	18	44181267	44181267	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	NM_144612	exon8	c.C1047T	p.I349I	CAGCTCGATGTGG	.	91.0	51.0	117.0	0.0	.	Atlas-SNP
CXXC1	30827	hgsc.bcm.edu	37	18	47809921	47809921	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CXXC1-131	NM_001101654	exon12	c.C1550T	p.T517M	AAGGACGTCTGGC	.	144.0	109.0	267.0	1.0	.	Atlas-SNP
TNFRSF11A	8792	hgsc.bcm.edu	37	18	60017106	60017106	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TNFRSF11A-659	NM_003839	exon3	c.G219A	p.P73P	TGGCCCGGATGAA	.	68.0	59.0	105.0	0.0	.	Atlas-SNP
SERPINB2	5055	hgsc.bcm.edu	37	18	61564454	61564454	+	Splice_Site	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SERPINB2-226	NM_002575	exon4	c.417+1G>A	.	CGGGAAGTAAGTG	.	35.0	24.0	43.0	0.0	.	Atlas-SNP
ZNF407	55628	hgsc.bcm.edu	37	18	72347651	72347651	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ZNF407-92	NM_001146190	exon1	c.G4676A	p.R1559H	ACATTCGCACTCA	.	201.0	171.0	110.0	0.0	.	Atlas-SNP
ATP8B3	148229	hgsc.bcm.edu	37	19	1796766	1796766	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	NM_001178002	exon16	c.G1556A	p.R519H	AGCAGGCGCCAGA	.	114.0	101.0	46.0	0.0	.	Atlas-SNP
TBXA2R	6915	hgsc.bcm.edu	37	19	3595765	3595765	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TBXA2R-90	NM_201636	exon3	c.G953A	p.R318H	TGGAGACGCCGGA	.	182.0	66.0	76.0	0.0	.	Atlas-SNP
PLIN3	10226	hgsc.bcm.edu	37	19	4839518	4839518	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PLIN3-90	NM_001164194	exon8	c.C955T	p.R319W	TGTCCCGGAACAT	.	89.0	69.0	132.0	1.0	.	Atlas-SNP
PTPRS	5802	hgsc.bcm.edu	37	19	5244045	5244045	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PTPRS-357	NM_002850	exon11	c.C1437T	p.N479N	GTCCACGTTGTGC	.	61.0	47.0	46.0	0.0	.	Atlas-SNP
RAB11B	9230	hgsc.bcm.edu	37	19	8464942	8464942	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	RAB11B-227	NM_004218	exon2	c.C236T	p.A79V	CCTCCGCGTGCGT	.	574.0	210.0	92.0	0.0	.	Atlas-SNP
PIN1	5300	hgsc.bcm.edu	37	19	9959811	9959811	+	Missense_Mutation	SNP	C	C	T	rs112773610		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PIN1-227	NM_006221	exon4	c.C428T	p.T143M	TGCGGACGGGGGA	.	128.0	76.0	54.0	0.0	C|0.500;T|0.500	Atlas-SNP
ILF3	3609	hgsc.bcm.edu	37	19	10798173	10798173	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ILF3-93	NM_012218	exon18	c.C2211T	p.H737H	GCCGCACGGGGGC	.	279.0	166.0	167.0	0.0	.	Atlas-SNP
LDLR	3949	hgsc.bcm.edu	37	19	11218155	11218155	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	LDLR-94	NM_001195802	exon5	c.G542T	p.C181F	GAGACTGCCGGGA	.	351.0	22.0	253.0	0.0	.	Atlas-SNP
ZNF563	147837	hgsc.bcm.edu	37	19	12429665	12429665	+	Missense_Mutation	SNP	G	G	A	rs201356487	alternate_allele	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ZNF563-90	NM_145276	exon4	c.C1174T	p.P392S	TATGAGGTCCACC	.	287.0	15.0	148.0	0.0	G|1.000;T|0.000	Atlas-SNP
ASNA1	439	hgsc.bcm.edu	37	19	12858083	12858083	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ASNA1-92	NM_004317	exon5	c.G682A	p.V228I	CTGCCCGTCATCC	.	201.0	53.0	119.0	0.0	.	Atlas-SNP
HOOK2	29911	hgsc.bcm.edu	37	19	12881872	12881872	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	HOOK2-92	NM_001100176	exon10	c.G776T	p.R259M	TCCTCCCTGCCAC	.	215.0	21.0	118.0	0.0	.	Atlas-SNP
NOTCH3	4854	hgsc.bcm.edu	37	19	15292567	15292567	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	NOTCH3-855	NM_000435	exon17	c.T2612C	p.F871S	CAGGAAAAGGAGC	.	422.0	31.0	83.0	0.0	.	Atlas-SNP
BRD4	23476	hgsc.bcm.edu	37	19	15355539	15355539	+	Silent	SNP	G	G	A	rs201923211		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	BRD4-767	NM_058243	exon12	c.C2193T	p.P731P	CCTCCCGGGGTGC	.	213.0	72.0	123.0	0.0	.	Atlas-SNP
JAK3	3718	hgsc.bcm.edu	37	19	17945987	17945987	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	JAK3-2418	NM_000215	exon15	c.G1952A	p.R651Q	ACCTTCCGGGCAG	.	145.0	13.0	85.0	0.0	.	Atlas-SNP
ATP13A1	57130	hgsc.bcm.edu	37	19	19770410	19770410	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ATP13A1-138	NM_020410	exon3	c.A677C	p.K226T	ACTCACTTGTTGC	.	192.0	23.0	94.0	0.0	.	Atlas-SNP
PLEKHF1	79156	hgsc.bcm.edu	37	19	30165469	30165469	+	Silent	SNP	G	G	A	rs143273878	byfrequency;alternate_allele	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PLEKHF1-226	NM_024310	exon2	c.G723A	p.A241A	CGGAGCGTCCAGT	.	89.0	25.0	35.0	0.0	G|0.999;T|0.001	Atlas-SNP
TSHZ3	57616	hgsc.bcm.edu	37	19	31769263	31769263	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TSHZ3-232	NM_020856	exon2	c.C1436T	p.A479V	GTGACCGCTTTCT	.	155.0	25.0	107.0	0.0	.	Atlas-SNP
ZNF793	390927	hgsc.bcm.edu	37	19	38028650	38028650	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ZNF793-68	NM_001013659	exon8	c.G1090C	p.E364Q	ACAGGAGAGAAGC	.	95.0	9.0	66.0	0.0	.	Atlas-SNP
SPINT2	10653	hgsc.bcm.edu	37	19	38780794	38780794	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SPINT2-90	NM_001166103	exon4	c.C256T	p.R86C	CCTTGCCGTGCAT	.	172.0	99.0	198.0	0.0	.	Atlas-SNP
RYR1	6261	hgsc.bcm.edu	37	19	39018344	39018344	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	RYR1-100	NM_001042723	exon72	c.C10729T	p.R3577C	CCGGGTCGCGAGG	.	244.0	119.0	237.0	1.0	.	Atlas-SNP
FCGBP	8857	hgsc.bcm.edu	37	19	40368454	40368454	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FCGBP-98	NM_003890	exon28	c.G12894A	p.V4298V	AGGTGGCACATGA	.	399.0	56.0	360.0	0.0	.	Atlas-SNP
GRIK5	2901	hgsc.bcm.edu	37	19	42525580	42525580	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	GRIK5-90	NM_002088	exon14	c.C1744T	p.R582C	GGGGGCGTGCCCG	.	74.0	6.0	61.0	0.0	.	Atlas-SNP
LIPE	3991	hgsc.bcm.edu	37	19	42914843	42914843	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	LIPE-154	NM_005357	exon2	c.G1035A	p.A345A	CCCCAGCGCCTGC	.	171.0	39.0	37.0	0.0	.	Atlas-SNP
PSG6	5675	hgsc.bcm.edu	37	19	43411758	43411758	+	Missense_Mutation	SNP	G	G	A	rs200244036		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PSG6-92	NM_001031850	exon4	c.C955T	p.R319C	TACTGCGGATGCC	.	156.0	65.0	137.0	0.0	.	Atlas-SNP
PVR	5817	hgsc.bcm.edu	37	19	45157249	45157249	+	Missense_Mutation	SNP	C	C	T	rs3745145	alternate_allele	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PVR-90	NM_001135768	exon4	c.C805T	p.R269C	GATGCTCGCAGCA	.	87.0	50.0	71.0	0.0	C|0.161;G|0.839	Atlas-SNP
STRN4	29888	hgsc.bcm.edu	37	19	47236402	47236402	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	STRN4-90	NM_001039877	exon5	c.G631A	p.G211R	CTGCCCCGTTGAG	.	73.0	6.0	41.0	0.0	.	Atlas-SNP
ARHGAP35	2909	hgsc.bcm.edu	37	19	47423998	47423998	+	Missense_Mutation	SNP	G	G	A	rs142807428	by1000genomes	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	NM_004491	exon1	c.G2066A	p.R689Q	GCCGGCGGGATAA	.	119.0	51.0	64.0	0.0	G|0.999;A|0.000	Atlas-SNP
RASIP1	54922	hgsc.bcm.edu	37	19	49238683	49238683	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	RASIP1-228	NM_017805	exon4	c.C949T	p.R317C	CTGAGCGCTCCTT	.	189.0	92.0	50.0	0.0	.	Atlas-SNP
FUZ	80199	hgsc.bcm.edu	37	19	50311889	50311889	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FUZ-90	NM_001171937	exon8	c.G792C	p.L264L	GAGGAGCAGCAGC	.	122.0	66.0	83.0	0.0	.	Atlas-SNP
LILRB4	11006	hgsc.bcm.edu	37	19	55177714	55177714	+	Missense_Mutation	SNP	C	C	T	rs201125273		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	LILRB4-93	NM_006847	exon8	c.C898T	p.R300C	TTCCAACGTCCTC	.	136.0	62.0	140.0	0.0	C|0.997;T|0.003	Atlas-SNP
NLRP2	55655	hgsc.bcm.edu	37	19	55494012	55494012	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	NLRP2-120	NM_001174083	exon7	c.G877A	p.V293I	GTGCCCGTCCTCC	.	129.0	53.0	88.0	0.0	.	Atlas-SNP
PEG3	5178	hgsc.bcm.edu	37	19	57328441	57328441	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PEG3-164	NM_001146186	exon7	c.T1369C	p.C457R	TCCCACACTCATC	.	398.0	193.0	321.0	1.0	.	Atlas-SNP
ZNF419	79744	hgsc.bcm.edu	37	19	58002904	58002904	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ZNF419-90	NM_001098494	exon3	c.C141T	p.D47D	TGATGACGCTCAG	.	381.0	122.0	268.0	0.0	.	Atlas-SNP
ZBTB45	84878	hgsc.bcm.edu	37	19	59028363	59028363	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ZBTB45-90	NM_032792	exon2	c.C678T	p.G226G	TGGGCCGCCACCT	.	224.0	29.0	158.0	0.0	.	Atlas-SNP
ARHGEF18	23370	hgsc.bcm.edu	37	19	7529570	7529576	+	Frame_Shift_Del	DEL	GCAGGTG	GCAGGTG	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	GCAGGTG	GCAGGTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ARHGEF18-228	NM_001130955	exon13	c.2333_2339del	p.778_780del	.	.	191.0	29.0	138.0	0.0	.	Atlas-Indel
KIRREL2	84063	hgsc.bcm.edu	37	19	36357214	36357214	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	KIRREL2-93	NM_199180	exon15	c.1946delT	p.V649fs	.	.	31.0	18.0	31.0	0.0	.	Atlas-Indel
SIPA1L3	23094	hgsc.bcm.edu	37	19	38609984	38609985	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SIPA1L3-91	NM_015073	exon9	c.2330_2331insC	p.G777fs	.	.	88.0	38.0	86.0	0.0	.	Atlas-Indel
PLEKHG2	64857	hgsc.bcm.edu	37	19	39905656	39905656	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PLEKHG2-274	NM_022835	exon3	c.133delT	p.S45fs	.	.	170.0	76.0	193.0	0.0	.	Atlas-Indel
FAM83E	54854	hgsc.bcm.edu	37	19	49107038	49107038	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FAM83E-91	NM_017708	exon4	c.890delA	p.Q297fs	.	.	117.0	57.0	71.0	0.0	.	Atlas-Indel
PRR12	57479	hgsc.bcm.edu	37	19	50098807	50098808	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PRR12-70	NM_020719	exon4	c.1215_1216insC	p.R405fs	.	.	56.0	18.0	43.0	0.0	.	Atlas-Indel
ZNF470	388566	hgsc.bcm.edu	37	19	57088962	57088964	+	In_Frame_Del	DEL	TAT	TAT	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	TAT	TAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ZNF470-92	NM_001001668	exon6	c.1164_1166del	p.388_389del	.	.	159.0	57.0	103.0	0.0	.	Atlas-Indel
TYK2	7297	hgsc.bcm.edu	37	19	10479028	10479028	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TYK2-1009	NM_003331	exon4	c.261delA	p.P87fs	.	.	513.0	79.0	285.0	0.0	.	Pindel
DMWD	1762	hgsc.bcm.edu	37	19	46289542	46289544	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	CTC	CTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	DMWD-90	NM_004943	exon3	c.1211_1213del	p.404_405del	.	.	196.0	38.0	41.0	0.0	.	Pindel
TNFRSF25	8718	hgsc.bcm.edu	37	1	6525618	6525618	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TNFRSF25-714	NM_001039664	exon2	c.G42A	p.A14A	GAGGAGCGCCTGG	.	174.0	141.0	138.0	0.0	.	Atlas-SNP
MFAP2	4237	hgsc.bcm.edu	37	1	17302155	17302155	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MFAP2-514	NM_001135247	exon7	c.C354T	p.N118N	GACCTCGTTGAGA	.	96.0	73.0	183.0	0.0	.	Atlas-SNP
IGSF21	84966	hgsc.bcm.edu	37	1	18691904	18691904	+	Missense_Mutation	SNP	C	C	T	rs144142024	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	IGSF21-156	NM_032880	exon6	c.C728T	p.T243M	CCTACACGGAGCG	.	154.0	125.0	274.0	1.0	C|1.000;T|0.000	Atlas-SNP
EMC1	23065	hgsc.bcm.edu	37	1	19545802	19545802	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	NM_001271428	exon23	c.C2974T	p.R992X	TTTATCGCCAGGC	.	70.0	41.0	105.0	0.0	.	Atlas-SNP
EPHB2	2048	hgsc.bcm.edu	37	1	23222940	23222940	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	EPHB2-1381	NM_017449	exon9	c.G1734A	p.T578T	GTACACGGACAAG	.	78.0	62.0	143.0	0.0	.	Atlas-SNP
DLGAP3	58512	hgsc.bcm.edu	37	1	35365799	35365799	+	Missense_Mutation	SNP	C	C	T	rs140339373		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	DLGAP3-71	NM_001080418	exon2	c.G1183A	p.G395S	AGCTGCCGCTCCG	.	95.0	7.0	125.0	0.0	C|0.999;T|0.000	Atlas-SNP
FOXJ3	22887	hgsc.bcm.edu	37	1	42657281	42657281	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FOXJ3-228	NM_001198851	exon11	c.C1044G	p.S348R	GGACAGGCTGCTT	.	169.0	144.0	246.0	0.0	.	Atlas-SNP
C1orf87	127795	hgsc.bcm.edu	37	1	60463390	60463390	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	C1orf87-154	NM_152377	exon11	c.G1371C	p.Q457H	GAAGGGCTGGGAG	.	85.0	73.0	125.0	0.0	.	Atlas-SNP
SGIP1	84251	hgsc.bcm.edu	37	1	67155933	67155933	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SGIP1-93	NM_032291	exon17	c.C1504T	p.R502W	TTAGCGCGGGCTG	.	73.0	61.0	85.0	0.0	.	Atlas-SNP
SGIP1	84251	hgsc.bcm.edu	37	1	67195022	67195022	+	Silent	SNP	G	G	A	rs150154953	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SGIP1-93	NM_032291	exon20	c.G1818A	p.P606P	CAACCCGTCCCCA	.	146.0	107.0	180.0	0.0	G|0.999;A|0.001	Atlas-SNP
OLFML3	56944	hgsc.bcm.edu	37	1	114524270	114524270	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	OLFML3-68	NM_020190	exon3	c.G1100A	p.R367H	TTCCCCGCAGATA	.	85.0	11.0	120.0	0.0	.	Atlas-SNP
LCE2B	26239	hgsc.bcm.edu	37	1	152659333	152659333	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	LCE2B-92	NM_014357	exon2	c.A14G	p.Q5R	GCCAGCAAAACCA	.	80.0	69.0	86.0	0.0	.	Atlas-SNP
MEF2D	4209	hgsc.bcm.edu	37	1	156437983	156437983	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MEF2D-659	NM_001271629	exon10	c.G1335A	p.A445A	GGGAGGCGCAGGG	.	73.0	63.0	40.0	0.0	.	Atlas-SNP
NES	10763	hgsc.bcm.edu	37	1	156640677	156640677	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	NES-520	NM_006617	exon4	c.G3303A	p.P1101P	CTGCCCCGGGCCT	.	52.0	47.0	48.0	0.0	.	Atlas-SNP
UCK2	7371	hgsc.bcm.edu	37	1	165865482	165865482	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	UCK2-91	NM_012474	exon4	c.C412A	p.L138M	GGGATCCTGGCCT	.	145.0	19.0	190.0	0.0	.	Atlas-SNP
ILDR2	387597	hgsc.bcm.edu	37	1	166891885	166891885	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ILDR2-91	NM_199351	exon8	c.C1156T	p.R386C	GCCCGCGGCTTGC	.	61.0	45.0	114.0	0.0	.	Atlas-SNP
SELP	6403	hgsc.bcm.edu	37	1	169559391	169559391	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SELP-94	NM_003005	exon16	c.C2488T	p.P830S	CTTAAGGACTCGG	.	43.0	35.0	63.0	0.0	.	Atlas-SNP
RASAL2	9462	hgsc.bcm.edu	37	1	178412191	178412191	+	Missense_Mutation	SNP	C	C	T	rs200438546		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	RASAL2-155	NM_170692	exon8	c.C1309T	p.R437C	AAATCACGTTTCC	.	107.0	29.0	145.0	0.0	.	Atlas-SNP
PPFIA4	8497	hgsc.bcm.edu	37	1	203025515	203025515	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PPFIA4-230	NM_015053	exon5	c.C601A	p.R201R	GTGTCTCGGGAAG	.	147.0	119.0	262.0	1.0	.	Atlas-SNP
ACBD3	64746	hgsc.bcm.edu	37	1	226342403	226342403	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ACBD3-226	NM_022735	exon6	c.C1035T	p.S345S	TTTTTCGGAGCTG	.	150.0	134.0	194.0	0.0	.	Atlas-SNP
PARP1	142	hgsc.bcm.edu	37	1	226555191	226555191	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PARP1-727	NM_001618	exon17	c.C2396T	p.T799I	ATGTCAGTTTTGA	.	110.0	24.0	157.0	0.0	.	Atlas-SNP
SLC35F3	148641	hgsc.bcm.edu	37	1	234367444	234367444	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SLC35F3-92	NM_173508	exon3	c.G565A	p.V189I	GGGCACGTCTGCA	.	216.0	172.0	338.0	0.0	.	Atlas-SNP
ADAMTSL4	54507	hgsc.bcm.edu	37	1	150530506	150530506	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ADAMTSL4-92	NM_025008	exon14	c.2262delT	p.F754fs	.	.	52.0	14.0	40.0	0.0	.	Atlas-Indel
GON4L	54856	hgsc.bcm.edu	37	1	155823172	155823172	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	GON4L-93	NM_032292	exon2	c.401delT	p.M134fs	.	.	108.0	33.0	130.0	0.0	.	Atlas-Indel
ARV1	64801	hgsc.bcm.edu	37	1	231131567	231131567	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ARV1-154	NM_022786	exon4	c.509delC	p.A170fs	.	.	32.0	18.0	71.0	0.0	.	Pindel
FMN2	56776	hgsc.bcm.edu	37	1	240370291	240370295	+	Frame_Shift_Del	DEL	AGGTT	AGGTT	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	AGGTT	AGGTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FMN2-145	NM_020066	exon5	c.2178_2182del	p.726_728del	.	.	119.0	64.0	191.0	0.0	.	Pindel
C20orf194	25943	hgsc.bcm.edu	37	20	3275220	3275220	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	C20orf194-68	NM_001009984	exon24	c.C2074T	p.R692W	AACTCCGTTTCTC	.	68.0	24.0	75.0	0.0	.	Atlas-SNP
GFRA4	64096	hgsc.bcm.edu	37	20	3640605	3640605	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	GFRA4-90	NM_022139	exon6	c.G761A	p.R254H	AGGGAGCGTCTCT	.	61.0	25.0	60.0	0.0	.	Atlas-SNP
BPIFB4	149954	hgsc.bcm.edu	37	20	31671498	31671498	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	NM_182519	exon3	c.G495A	p.A165A	TGGGGCGGTGGGC	.	253.0	115.0	153.0	0.0	.	Atlas-SNP
DLGAP4	22839	hgsc.bcm.edu	37	20	35060497	35060497	+	Missense_Mutation	SNP	G	G	A	rs202172659		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	DLGAP4-94	NM_014902	exon2	c.G377A	p.R126H	TTCCCCGTGGCGA	.	134.0	62.0	98.0	0.0	G|0.999;A|0.001	Atlas-SNP
PPP1R16B	26051	hgsc.bcm.edu	37	20	37546897	37546897	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PPP1R16B-228	NM_001172735	exon10	c.C1166T	p.P389L	GGGCTCCGGTCAG	.	219.0	18.0	171.0	0.0	.	Atlas-SNP
JPH2	57158	hgsc.bcm.edu	37	20	42815069	42815069	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	JPH2-91	NM_020433	exon1	c.C277T	p.R93C	CGTAGCGTCCCTT	.	150.0	8.0	138.0	0.0	.	Atlas-SNP
TTPAL	79183	hgsc.bcm.edu	37	20	43118014	43118014	+	Silent	SNP	C	C	T	rs180792442		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TTPAL-153	NM_001039199	exon5	c.C861T	p.N287N	CTGGAACGCGGTA	.	206.0	11.0	214.0	0.0	C|0.999;T|0.000	Atlas-SNP
ELMO2	63916	hgsc.bcm.edu	37	20	45023110	45023110	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ELMO2-91	NM_182764	exon2	c.G12A	p.P4P	GTCTGACGGTGGT	.	379.0	156.0	250.0	1.0	.	Atlas-SNP
BMP7	655	hgsc.bcm.edu	37	20	55777574	55777574	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	BMP7-187	NM_001719	exon3	c.G717A	p.P239P	GTGCCGCGGATTG	.	107.0	46.0	84.0	0.0	.	Atlas-SNP
RAE1	8480	hgsc.bcm.edu	37	20	55931510	55931510	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	RAE1-226	NM_003610	exon4	c.C204T	p.C68C	TCGCTGCTGGGAA	.	141.0	61.0	93.0	0.0	.	Atlas-SNP
CDH4	1002	hgsc.bcm.edu	37	20	60499460	60499460	+	Missense_Mutation	SNP	C	C	T	rs1051676		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CDH4-282	NM_001252339	exon10	c.C1475T	p.A492V	CCACGGCGGCAGT	.	241.0	96.0	208.0	0.0	C|1.000;T|0.000	Atlas-SNP
CDH4	1002	hgsc.bcm.edu	37	20	60509119	60509119	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CDH4-282	NM_001252339	exon14	c.C2163T	p.Y721Y	GGACTACGACCTC	.	181.0	84.0	78.0	0.0	.	Atlas-SNP
SRMS	6725	hgsc.bcm.edu	37	20	62172334	62172334	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SRMS-521	NM_080823	exon8	c.C1304T	p.T435M	TGCAGCGTCTCGT	.	75.0	35.0	19.0	0.0	.	Atlas-SNP
TNFRSF6B	8771	hgsc.bcm.edu	37	20	62328346	62328346	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TNFRSF6B-651	NM_003823	exon1	c.C226T	p.R76C	CCACCGCGCCACT	.	154.0	10.0	23.0	0.0	.	Atlas-SNP
RBL1	5933	hgsc.bcm.edu	37	20	35663914	35663914	+	Splice_Site	DEL	A	A	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	RBL1-419	NM_002895	exon16	c.1904-2T>-	.	.	.	27.0	10.0	26.0	0.0	.	Atlas-Indel
PWP2	5822	hgsc.bcm.edu	37	21	45548439	45548439	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PWP2-91	NM_005049	exon20	c.G2517A	p.G839G	AGCCGGGACGCTG	.	109.0	98.0	154.0	0.0	.	Atlas-SNP
COL18A1	80781	hgsc.bcm.edu	37	21	46931077	46931077	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	COL18A1-90	NM_030582	exon41	c.C4277T	p.P1426L	AGGGTCCGCTGAA	.	66.0	17.0	110.0	0.0	.	Atlas-SNP
SLC25A18	83733	hgsc.bcm.edu	37	22	18070754	18070754	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SLC25A18-90	NM_031481	exon9	c.C639T	p.N213N	GTTCAACGAGCTC	.	173.0	142.0	301.0	0.0	.	Atlas-SNP
SLC5A4	6527	hgsc.bcm.edu	37	22	32614516	32614516	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SLC5A4-90	NM_014227	exon15	c.C1965T	p.H655H	GTAGCCGTGAATA	.	75.0	66.0	119.0	0.0	.	Atlas-SNP
TOM1	10043	hgsc.bcm.edu	37	22	35734781	35734781	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TOM1-91	NM_001135730	exon11	c.G1089A	p.A363A	TGGCGCGGTAAGC	.	37.0	5.0	33.0	0.0	.	Atlas-SNP
FOXRED2	80020	hgsc.bcm.edu	37	22	36900582	36900582	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FOXRED2-92	NM_001102371	exon3	c.C759A	p.T253T	GTAGTGGGTGGCC	.	87.0	76.0	135.0	1.0	.	Atlas-SNP
EIF3L	51386	hgsc.bcm.edu	37	22	38273801	38273801	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	EIF3L-69	NM_001242923	exon9	c.C1054T	p.R352C	ATGTTGCGCATGC	.	169.0	140.0	279.0	1.0	.	Atlas-SNP
SGSM3	27352	hgsc.bcm.edu	37	22	40803553	40803553	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SGSM3-494	NM_015705	exon13	c.G1505A	p.R502H	GCTTCCGCAAGAA	.	35.0	34.0	13.0	0.0	.	Atlas-SNP
SBF1	6305	hgsc.bcm.edu	37	22	50899065	50899065	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SBF1-90	NM_002972	exon24	c.G3044A	p.R1015Q	GGGTACCGCAGCT	.	87.0	67.0	167.0	1.0	.	Atlas-SNP
EP300	2033	hgsc.bcm.edu	37	22	41572252	41572254	+	In_Frame_Del	DEL	TCT	TCT	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	TCT	TCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	EP300-2011	NM_001429	exon30	c.4780_4782del	p.1594_1594del	.	.	59.0	41.0	98.0	0.0	.	Atlas-Indel
TPO	7173	hgsc.bcm.edu	37	2	1520736	1520736	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	TPO,NS,NS,-1	TPO-332	NM_001206744	exon15	c.C2600T	p.S867L	TCACCTCGACGGT	.	70.0	57.0	122.0	1.0	.	Atlas-SNP
LPIN1	23175	hgsc.bcm.edu	37	2	11960588	11960588	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	LPIN1-156	NM_001261427	exon20	c.G2479A	p.V827I	TTTACCGTCAACC	.	100.0	75.0	134.0	1.0	.	Atlas-SNP
EFR3B	22979	hgsc.bcm.edu	37	2	25366724	25366724	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	NM_014971	exon18	c.G2043T	p.Q681H	TCCTCAGCTGACA	.	84.0	69.0	117.0	0.0	.	Atlas-SNP
SLC30A6	55676	hgsc.bcm.edu	37	2	32396391	32396391	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SLC30A6-90	NM_001193513	exon2	c.C39T	p.S13S	AAGATCCTTTTTT	.	98.0	42.0	165.0	0.0	.	Atlas-SNP
XPO1	7514	hgsc.bcm.edu	37	2	61729431	61729431	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	XPO1-229	NM_003400	exon5	c.G316A	p.V106I	CAACAACGTATTT	.	89.0	6.0	111.0	0.0	.	Atlas-SNP
STAMBP	10617	hgsc.bcm.edu	37	2	74058012	74058012	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	STAMBP-524	NM_006463	exon3	c.C29T	p.P10L	GCCTCCCGCCCGA	.	77.0	65.0	99.0	0.0	.	Atlas-SNP
LOXL3	84695	hgsc.bcm.edu	37	2	74763595	74763595	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	LOXL3-226	NM_032603	exon6	c.C916T	p.R306C	GGACACGGGCCTA	.	60.0	50.0	83.0	0.0	.	Atlas-SNP
GNLY	10578	hgsc.bcm.edu	37	2	85922477	85922477	+	Silent	SNP	C	C	T	rs201139886		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	GNLY-90	NM_006433	exon2	c.C87T	p.Y29Y	GTACTACGACCTG	.	145.0	128.0	196.0	0.0	C|0.999;T|0.000	Atlas-SNP
GCC2	9648	hgsc.bcm.edu	37	2	109124031	109124031	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	GCC2-91	NM_181453	exon23	c.C5000T	p.A1667V	AAAATGCTTCCCG	.	228.0	191.0	381.0	1.0	.	Atlas-SNP
SLC4A10	57282	hgsc.bcm.edu	37	2	162813676	162813676	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SLC4A10-229	NM_001178016	exon20	c.C2662T	p.R888W	GGCATTCGGGAGC	.	110.0	10.0	116.0	0.0	.	Atlas-SNP
KCNH7	90134	hgsc.bcm.edu	37	2	163236465	163236465	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	KCNH7-95	NM_033272	exon14	c.C3029G	p.S1010C	AGTGCAGATGGAC	.	123.0	8.0	127.0	0.0	.	Atlas-SNP
CDCA7	83879	hgsc.bcm.edu	37	2	174228042	174228042	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CDCA7-91	NM_031942	exon4	c.G473A	p.R158Q	CAGCGCGGAGTAC	.	214.0	29.0	337.0	0.0	.	Atlas-SNP
ALS2CR8	79800	hgsc.bcm.edu	37	2	203817288	203817288	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ALS2CR8-136	NM_001104586	exon5	c.G313A	p.V105I	ATGATCGTTGCCA	.	43.0	4.0	55.0	0.0	.	Atlas-SNP
ABCA12	26154	hgsc.bcm.edu	37	2	215820071	215820071	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ABCA12-99	NM_173076	exon43	c.C6248T	p.S2083F	ATCCAGGAAAATG	.	201.0	161.0	219.0	0.0	.	Atlas-SNP
LRRFIP1	9208	hgsc.bcm.edu	37	2	238617211	238617211	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	LRRFIP1-153	NM_001137552	exon2	c.C91T	p.R31W	GCAAAACGGGCGG	.	304.0	238.0	246.0	1.0	.	Atlas-SNP
MSH2	4436	hgsc.bcm.edu	37	2	47707899	47707900	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MSH2-2445	NM_000251	exon15	c.2522_2523del	p.841_841del	.	.	110.0	91.0	154.0	0.0	.	Atlas-Indel
ARHGAP25	9938	hgsc.bcm.edu	37	2	69049670	69049670	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ARHGAP25-274	NM_001007231	exon10	c.1398delT	p.F466fs	.	.	107.0	34.0	160.0	0.0	.	Atlas-Indel
EN1	2019	hgsc.bcm.edu	37	2	119600797	119600799	+	In_Frame_Del	DEL	TTC	TTC	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	TTC	TTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	EN1-154	NM_001426	exon2	c.895_897del	p.299_299del	.	.	29.0	19.0	50.0	0.0	.	Atlas-Indel
MYO3B	140469	hgsc.bcm.edu	37	2	171509587	171509587	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MYO3B-530	NM_138995	exon35	c.3981delC	p.S1327fs	.	.	94.0	40.0	120.0	0.0	.	Atlas-Indel
TNS1	7145	hgsc.bcm.edu	37	2	218712886	218712887	+	In_Frame_Ins	INS	-	-	GCT	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TNS1-156	NM_022648	exon17	c.1979_1980insAGC	p.P660delinsQP	.	.	66.0	35.0	35.0	0.0	.	Atlas-Indel
PAX3	5077	hgsc.bcm.edu	37	2	223066912	223066912	+	Splice_Site	DEL	A	A	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PAX3-1821	NM_181458	exon9	c.1174-2T>-	.	.	.	81.0	65.0	88.0	0.0	.	Atlas-Indel
CCDC108	255101	hgsc.bcm.edu	37	2	219892999	219892999	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CCDC108-94	NM_194302	exon12	c.1776delT	p.P592fs	.	.	96.0	50.0	142.0	0.0	.	Pindel
ASXL2	55252	hgsc.bcm.edu	37	2	25966872	25966873	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ASXL2-23	NM_018263	exon12	c.2334_2335insC	p.P778fs	.	.	59.0	22.0	69.0	0.0	.	Pindel
CHL1	10752	hgsc.bcm.edu	37	3	447311	447311	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CHL1-583	NM_001253387	exon27	c.A3544G	p.I1182V	TCATTTATTGGTG	.	75.0	62.0	118.0	0.0	.	Atlas-SNP
IRAK2	3656	hgsc.bcm.edu	37	3	10219666	10219666	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	IRAK2-574	NM_001570	exon2	c.G239A	p.R80H	TGTGCCGCCTGGA	.	96.0	9.0	92.0	0.0	.	Atlas-SNP
TMEM40	55287	hgsc.bcm.edu	37	3	12778317	12778317	+	Missense_Mutation	SNP	C	C	T	rs201284335		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TMEM40-90	NM_018306	exon9	c.G490A	p.V164I	GGAGGACGAAATG	.	460.0	54.0	398.0	0.0	C|0.999;T|0.001	Atlas-SNP
LRRFIP2	9209	hgsc.bcm.edu	37	3	37107722	37107722	+	Missense_Mutation	SNP	G	G	A	rs148787856	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	LRRFIP2-91	NM_006309	exon23	c.C1559T	p.T520M	TCTCCCGTCTTCA	.	146.0	15.0	79.0	0.0	G|1.000;A|0.000	Atlas-SNP
SCN5A	6331	hgsc.bcm.edu	37	3	38618243	38618243	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SCN5A-98	NM_001099405	exon19	c.C3420T	p.S1140S	TGCTGTGCTGCCC	.	154.0	60.0	128.0	0.0	.	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	37	3	41266104	41266104	+	Missense_Mutation	SNP	G	G	A	rs28931589	bycluster	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	CTNNB1,gallbladder,other,0	CTNNB1-24361	NM_001098210	exon3	c.G101A	p.G34E	ACTCTGGAATCCA	.	110.0	97.0	210.0	0.0	G|1.000;T|0.000	Atlas-SNP
ALS2CL	259173	hgsc.bcm.edu	37	3	46718502	46718502	+	Missense_Mutation	SNP	C	C	T	rs200208936		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ALS2CL-155	NM_001190707	exon17	c.G1768A	p.V590M	CACCCACGCCCAG	.	46.0	35.0	91.0	0.0	C|0.999;T|0.000	Atlas-SNP
NME6	10201	hgsc.bcm.edu	37	3	48336637	48336637	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	NME6-115	NM_005793	exon5	c.C346T	p.R116C	CATGGCGTGCTCG	.	158.0	13.0	236.0	0.0	.	Atlas-SNP
GMPPB	29925	hgsc.bcm.edu	37	3	49760038	49760038	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	GMPPB-90	NM_013334	exon5	c.G552T	p.Q184H	GATGCGCTGCAGC	.	150.0	42.0	225.0	0.0	.	Atlas-SNP
PBRM1	55193	hgsc.bcm.edu	37	3	52584594	52584594	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PBRM1-575	NM_018313	exon29	c.A4419T	p.P1473P	TCCAGCTGGATGT	.	71.0	39.0	51.0	0.0	.	Atlas-SNP
FEZF2	55079	hgsc.bcm.edu	37	3	62355881	62355881	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FEZF2-278	NM_018008	exon5	c.C1257T	p.C419C	AGTGGCGCACGTG	.	407.0	21.0	367.0	0.0	.	Atlas-SNP
ROBO2	6092	hgsc.bcm.edu	37	3	77623681	77623681	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ROBO2-328	NM_002942	exon14	c.A2003G	p.Y668C	AAGGCTACCGAGT	.	244.0	14.0	152.0	0.0	.	Atlas-SNP
PLXNA1	5361	hgsc.bcm.edu	37	3	126726724	126726724	+	Missense_Mutation	SNP	G	G	A	rs149327396		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PLXNA1-93	NM_032242	exon8	c.G2080A	p.A694T	GACTGCGCCTTCC	.	191.0	80.0	192.0	0.0	G|1.000;A|0.000	Atlas-SNP
PLXNA1	5361	hgsc.bcm.edu	37	3	126752807	126752807	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PLXNA1-93	NM_032242	exon31	c.C5638T	p.R1880W	CGGCAGCGGCTGC	.	467.0	98.0	266.0	0.0	.	Atlas-SNP
MRPL3	11222	hgsc.bcm.edu	37	3	131219274	131219274	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MRPL3-90	NM_007208	exon3	c.G369A	p.Q123Q	TCTTACCTGAAGT	.	115.0	48.0	91.0	0.0	.	Atlas-SNP
EPHB1	2047	hgsc.bcm.edu	37	3	134911554	134911554	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	EPHB1-1492	NM_004441	exon11	c.C2019T	p.G673G	CATGGGCCAGTTC	.	404.0	171.0	337.0	1.0	.	Atlas-SNP
TRIM42	287015	hgsc.bcm.edu	37	3	140407267	140407267	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TRIM42-227	NM_152616	exon3	c.C1743T	p.S581S	AGACAGCCAGTCT	.	215.0	76.0	140.0	0.0	.	Atlas-SNP
ANKUB1	389161	hgsc.bcm.edu	37	3	149485286	149485286	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	NM_001144960	exon5	c.A1163C	p.K388T	ACAGGTTTGCTGC	.	190.0	14.0	131.0	0.0	.	Atlas-SNP
GPR87	53836	hgsc.bcm.edu	37	3	151011993	151011993	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	GPR87-153	NM_023915	exon3	c.G1041A	p.S347S	AACTTCCGATCTT	.	381.0	182.0	276.0	1.0	.	Atlas-SNP
LRRC34	151827	hgsc.bcm.edu	37	3	169511575	169511575	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	LRRC34-90	NM_001172779	exon11	c.G1243A	p.V415M	GCTCCACATCTGT	.	195.0	21.0	108.0	0.0	.	Atlas-SNP
PRKCI	5584	hgsc.bcm.edu	37	3	169985778	169985778	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PRKCI-1378	NM_002740	exon5	c.G440A	p.R147H	CCAAGCGTTTCAA	.	93.0	33.0	56.0	0.0	.	Atlas-SNP
ABCC5	10057	hgsc.bcm.edu	37	3	183732094	183732094	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ABCC5-137	NM_001023587	exon2	c.G87A	p.T29T	TCTGTGCGTCCCA	.	130.0	14.0	93.0	0.0	.	Atlas-SNP
EPHB3	2049	hgsc.bcm.edu	37	3	184297350	184297350	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	EPHB3-1455	NM_004443	exon10	c.C1887T	p.D629D	GATCGACGTGTCC	.	441.0	47.0	390.0	0.0	.	Atlas-SNP
LRRC15	131578	hgsc.bcm.edu	37	3	194080702	194080702	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	LRRC15-71	NM_130830	exon2	c.C1071T	p.D357D	GTTCCCGTCCAGG	.	227.0	108.0	231.0	0.0	.	Atlas-SNP
APOD	347	hgsc.bcm.edu	37	3	195306326	195306326	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	APOD-516	NM_001647	exon2	c.A7C	p.M3L	GCAGCATCACCAT	.	71.0	27.0	56.0	0.0	.	Atlas-SNP
MUC20	200958	hgsc.bcm.edu	37	3	195453329	195453329	+	Nonsense_Mutation	SNP	C	C	T	rs73203946	byfrequency;alternate_allele	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	NM_001098516	exon2	c.C1237T	p.R413X	AGCAGCCGAGGGA	.	682.0	162.0	575.0	0.0	C|0.967;A|0.033	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	37	3	195516579	195516579	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MUC4-90	NM_018406	exon2	c.A1872G	p.T624T	GGTGCTTGTGGAA	.	282.0	117.0	246.0	0.0	.	Atlas-SNP
LRCH3	84859	hgsc.bcm.edu	37	3	197598289	197598289	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	LRCH3-91	NM_032773	exon19	c.C2086T	p.R696X	CATGTGCGACCTC	.	334.0	161.0	249.0	1.0	.	Atlas-SNP
LMLN	89782	hgsc.bcm.edu	37	3	197702954	197702954	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	LMLN-91	NM_033029	exon4	c.C403T	p.R135X	GTCCGTCGACCTG	.	153.0	69.0	119.0	0.0	.	Atlas-SNP
CNOT10	25904	hgsc.bcm.edu	37	3	32774948	32774948	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CNOT10-91	NM_001256742	exon11	c.1428delC	p.S476fs	.	.	169.0	48.0	144.0	0.0	.	Atlas-Indel
ACTR8	93973	hgsc.bcm.edu	37	3	53910110	53910110	+	Splice_Site	DEL	G	G	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ACTR8-91	NM_022899	exon8	c.779-2C>-	.	.	.	96.0	41.0	76.0	0.0	.	Atlas-Indel
EIF4G1	1981	hgsc.bcm.edu	37	3	184042024	184042025	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	EIF4G1-344	NM_182917	exon16	c.2510_2511del	p.837_837del	.	.	374.0	92.0	296.0	0.0	.	Atlas-Indel
FETUB	26998	hgsc.bcm.edu	37	3	186362544	186362544	+	Nonsense_Mutation	DEL	A	A	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FETUB-92	NM_014375	exon4	c.428delC	p.S143X	.	.	60.0	29.0	49.0	0.0	.	Atlas-Indel
FYTTD1	84248	hgsc.bcm.edu	37	3	197505338	197505338	+	Splice_Site	DEL	A	A	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FYTTD1-90	NM_001011537	exon9	c.780+2A>-	.	.	.	187.0	68.0	192.0	0.0	.	Atlas-Indel
MAGI1	9223	hgsc.bcm.edu	37	3	65372850	65372851	+	Frame_Shift_Del	DEL	TC	TC	-	rs139764373	by1000genomes	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MAGI1-661	NM_004742	exon15	c.2468_2469del	p.823_823del	.	.	147.0	42.0	86.0	0.0	.	Pindel
HGFAC	3083	hgsc.bcm.edu	37	4	3444827	3444827	+	Missense_Mutation	SNP	C	C	T	rs140691145		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	HGFAC-514	NM_001528	exon3	c.C349T	p.R117C	GGGGGCCGCATGC	.	38.0	31.0	26.0	0.0	C|1.000;T|0.000	Atlas-SNP
FAM184B	27146	hgsc.bcm.edu	37	4	17711136	17711136	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FAM184B-23	NM_015688	exon2	c.C273T	p.C91C	CTCTGCGCAGCCC	.	66.0	50.0	91.0	0.0	.	Atlas-SNP
TMEM165	55858	hgsc.bcm.edu	37	4	56283354	56283354	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TMEM165-514	NM_018475	exon3	c.T549C	p.P183P	GAGCCCTGATGAG	.	52.0	43.0	100.0	0.0	.	Atlas-SNP
FRAS1	80144	hgsc.bcm.edu	37	4	78987147	78987147	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FRAS1-68	NM_025074	exon2	c.G85A	p.V29I	GCTTGTGTCTATC	.	53.0	41.0	95.0	0.0	.	Atlas-SNP
BMP3	651	hgsc.bcm.edu	37	4	81967507	81967507	+	Missense_Mutation	SNP	A	A	T	rs138325448	alternate_allele	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	BMP3-518	NM_001201	exon2	c.A932T	p.K311M	ATAAAAAGGATGA	.	80.0	73.0	103.0	0.0	A|1.000;G|0.000	Atlas-SNP
ADH7	131	hgsc.bcm.edu	37	4	100349278	100349278	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ADH7-227	NM_000673	exon4	c.C349T	p.R117C	GGTTGCGACAAGC	.	133.0	106.0	157.0	0.0	.	Atlas-SNP
FAM198B	51313	hgsc.bcm.edu	37	4	159092445	159092445	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FAM198B-90	NM_001128424	exon2	c.G83C	p.S28T	CGGCTGCTCCAGA	.	123.0	105.0	138.0	0.0	.	Atlas-SNP
SNX25	83891	hgsc.bcm.edu	37	4	186272686	186272686	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SNX25-273	NM_031953	exon14	c.G1897A	p.V633M	ATCGACGTGCAGG	.	68.0	49.0	98.0	0.0	.	Atlas-SNP
ARAP2	116984	hgsc.bcm.edu	37	4	36069850	36069851	+	Frame_Shift_Del	DEL	TT	TT	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ARAP2-93	NM_015230	exon33	c.4794_4795del	p.1598_1599del	.	.	38.0	34.0	56.0	0.0	.	Atlas-Indel
BMP3	651	hgsc.bcm.edu	37	4	81967503	81967503	+	Nonsense_Mutation	DEL	A	A	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	BMP3-518	NM_001201	exon2	c.927delT	p.Y309X	.	.	78.0	69.0	105.0	0.0	.	Atlas-Indel
QRFPR	84109	hgsc.bcm.edu	37	4	122301511	122301513	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	AGA	AGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	QRFPR-90	NM_198179	exon1	c.291_293del	p.97_98del	.	.	137.0	55.0	148.0	0.0	.	Pindel
LRRC14B	389257	hgsc.bcm.edu	37	5	192355	192355	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	LRRC14B-69	NM_001080478	exon1	c.C702A	p.A234A	TCTGGCCCAGGTG	.	159.0	12.0	13.0	0.0	.	Atlas-SNP
NR2F1	7025	hgsc.bcm.edu	37	5	92929487	92929487	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	NR2F1-227	NM_005654	exon3	c.G1211A	p.R404H	TCATCCGCGATAT	.	332.0	165.0	332.0	1.0	.	Atlas-SNP
SEMA6A	57556	hgsc.bcm.edu	37	5	115813772	115813772	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SEMA6A-92	NM_020796	exon14	c.G1506A	p.A502A	AGAGAACGCAACA	.	260.0	29.0	207.0	0.0	.	Atlas-SNP
SEPT8	23176	hgsc.bcm.edu	37	5	132097247	132097247	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SEPT8-70	NM_001098813	exon7	c.C685T	p.R229C	GCTCGCGGAGGTC	.	156.0	72.0	104.0	0.0	.	Atlas-SNP
FSTL4	23105	hgsc.bcm.edu	37	5	132569152	132569152	+	Silent	SNP	G	G	A	rs190908572		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FSTL4-91	NM_015082	exon8	c.C972T	p.S324S	GTGGCCGGAAGCA	.	290.0	133.0	276.0	1.0	G|0.999;A|0.000	Atlas-SNP
PCDHA2	56146	hgsc.bcm.edu	37	5	140174695	140174695	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PCDHA2-94	NM_018905	exon1	c.C146T	p.A49V	GCATCGCGCAGGA	.	158.0	78.0	46.0	0.0	.	Atlas-SNP
PCDHGA3	56112	hgsc.bcm.edu	37	5	140725147	140725147	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PCDHGA3-68	NM_018916	exon1	c.C1547T	p.A516V	TATACGCGCTGAG	.	527.0	178.0	340.0	0.0	.	Atlas-SNP
PCDHGA3	56112	hgsc.bcm.edu	37	5	140725295	140725295	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PCDHGA3-68	NM_018916	exon1	c.C1695T	p.P565P	GTACCCCGCCCTC	.	468.0	99.0	190.0	0.0	.	Atlas-SNP
PCDHGA3	56112	hgsc.bcm.edu	37	5	140725299	140725299	+	Missense_Mutation	SNP	C	C	T	rs201819603	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PCDHGA3-68	NM_018916	exon1	c.C1699T	p.L567F	CCCGCCCTCCCCA	.	454.0	92.0	183.0	0.0	C|0.999;T|0.001	Atlas-SNP
CYFIP2	26999	hgsc.bcm.edu	37	5	156746911	156746911	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CYFIP2-22	NM_001037333	exon14	c.C1498T	p.R500W	GCGGTACGGAAGA	.	210.0	86.0	197.0	0.0	.	Atlas-SNP
LCP2	3937	hgsc.bcm.edu	37	5	169685169	169685169	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	LCP2-23	NM_005565	exon16	c.G972A	p.V324V	CTGATGCACTGTG	.	155.0	18.0	120.0	0.0	.	Atlas-SNP
STC2	8614	hgsc.bcm.edu	37	5	172744904	172744904	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	STC2-93	NM_003714	exon4	c.C855T	p.S285S	GCTTCCGGAAGGT	.	160.0	10.0	119.0	0.0	.	Atlas-SNP
PROP1	5626	hgsc.bcm.edu	37	5	177420005	177420005	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PROP1-90	NM_006261	exon3	c.G386A	p.R129H	AGTGAGCGCTCTT	.	141.0	49.0	101.0	0.0	.	Atlas-SNP
ADAMTS2	9509	hgsc.bcm.edu	37	5	178567010	178567010	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ADAMTS2-228	NM_014244	exon11	c.G1656A	p.W552X	TGTCAGCCAGATG	.	281.0	147.0	187.0	0.0	.	Atlas-SNP
IL7R	3575	hgsc.bcm.edu	37	5	35867541	35867541	+	Nonsense_Mutation	DEL	A	A	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	IL7R-157	NM_002185	exon3	c.354delC	p.C118X	.	.	70.0	20.0	37.0	0.0	.	Atlas-Indel
ITGA2	3673	hgsc.bcm.edu	37	5	52358762	52358763	+	Splice_Site	DEL	AA	AA	-	rs35940809	alternate_allele	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ITGA2-226	.	.	.	.	.	.	58.0	11.0	31.0	0.0	.	Atlas-Indel
ERCC8	1161	hgsc.bcm.edu	37	5	60224762	60224765	+	Frame_Shift_Del	DEL	TTTA	TTTA	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	TTTA	TTTA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ERCC8-227	NM_000082	exon2	c.100_103del	p.34_35del	.	.	105.0	44.0	73.0	0.0	.	Atlas-Indel
NSA2	10412	hgsc.bcm.edu	37	5	74066537	74066539	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	AAG	AAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	NSA2-91	NM_014886	exon4	c.423_425del	p.141_142del	.	.	602.0	256.0	387.0	0.0	.	Atlas-Indel
KIAA0825	285600	hgsc.bcm.edu	37	5	93807171	93807171	+	Splice_Site	DEL	T	T	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	KIAA0825-91	NM_001145678	exon10	c.1721+1A>-	.	.	.	136.0	70.0	106.0	0.0	.	Atlas-Indel
TRIM41	90933	hgsc.bcm.edu	37	5	180651181	180651182	+	In_Frame_Ins	INS	-	-	GGA	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TRIM41-226	NM_033549	exon1	c.182_183insGGA	p.R61delinsRE	.	.	209.0	54.0	161.0	0.0	.	Atlas-Indel
COL4A3BP	10087	hgsc.bcm.edu	37	5	74722306	74722306	+	Splice_Site	DEL	A	A	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	COL4A3BP-226	NM_005713	exon5	c.349-2T>-	.	.	.	125.0	30.0	80.0	0.0	.	Pindel
PCDHGA12	26025	hgsc.bcm.edu	37	5	140812776	140812776	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PCDHGA12-27	NM_032094	exon1	c.2449delC	p.L817fs	.	.	69.0	20.0	50.0	0.0	.	Pindel
KIAA1191	57179	hgsc.bcm.edu	37	5	175775319	175775320	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	KIAA1191-91	NM_001079685	exon6	c.500_501del	p.167_167del	.	.	153.0	46.0	116.0	0.0	.	Pindel
DAB2	1601	hgsc.bcm.edu	37	5	39390566	39390567	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	DAB2-227	NM_001244871	exon5	c.442_443insT	p.A148fs	.	.	123.0	25.0	93.0	0.0	.	Pindel
RIOK1	83732	hgsc.bcm.edu	37	6	7393387	7393387	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	RIOK1-336	NM_031480	exon2	c.C127T	p.L43F	GAAGACCTTCAAG	.	84.0	69.0	130.0	1.0	.	Atlas-SNP
HIVEP1	3096	hgsc.bcm.edu	37	6	12162023	12162023	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	HIVEP1-139	NM_002114	exon8	c.G6839A	p.R2280H	GGCAGCGTGCTGC	.	121.0	92.0	183.0	0.0	.	Atlas-SNP
ATXN1	6310	hgsc.bcm.edu	37	6	16306908	16306908	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ATXN1-93	NM_000332	exon9	c.C2100T	p.P700P	ATCCACGGGCTGG	.	97.0	81.0	144.0	1.0	.	Atlas-SNP
ATXN1	6310	hgsc.bcm.edu	37	6	16327924	16327924	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ATXN1-93	NM_000332	exon8	c.G618T	p.Q206H	CTGCTGCTGCTGC	.	47.0	4.0	20.0	0.0	.	Atlas-SNP
PRL	5617	hgsc.bcm.edu	37	6	22294740	22294740	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PRL-90	NM_000948	exon2	c.C102A	p.G34G	AGCCCCGCCGGGA	.	238.0	72.0	314.0	0.0	.	Atlas-SNP
VARS	7407	hgsc.bcm.edu	37	6	31747038	31747038	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	VARS-93	NM_006295	exon29	c.C3432T	p.G1144G	CAGGGCGCCCGTG	.	65.0	59.0	36.0	0.0	.	Atlas-SNP
TNXB	7148	hgsc.bcm.edu	37	6	32037421	32037421	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TNXB-90	NM_019105	exon15	c.G5496A	p.P1832P	CAGGCCCGGCACG	.	85.0	7.0	80.0	0.0	.	Atlas-SNP
ITPR3	3710	hgsc.bcm.edu	37	6	33638975	33638975	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ITPR3-1085	NM_002224	exon21	c.G2620A	p.G874S	TACTTCGGCTTCT	.	152.0	35.0	181.0	0.0	.	Atlas-SNP
BRPF3	27154	hgsc.bcm.edu	37	6	36179103	36179103	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	BRPF3-92	NM_015695	exon7	c.G2248T	p.E750X	CTGCTGGAGAAAC	.	51.0	47.0	77.0	0.0	.	Atlas-SNP
LRFN2	57497	hgsc.bcm.edu	37	6	40400435	40400435	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	LRFN2-93	NM_020737	exon2	c.G418A	p.A140T	CATCTGCGATGCC	.	68.0	56.0	77.0	0.0	.	Atlas-SNP
UBR2	23304	hgsc.bcm.edu	37	6	42627467	42627467	+	Missense_Mutation	SNP	G	G	A	rs147922807	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	UBR2-94	NM_015255	exon30	c.G3316A	p.V1106I	CAATTCGTTACAT	.	110.0	88.0	142.0	0.0	G|0.999;A|0.001	Atlas-SNP
RRP36	88745	hgsc.bcm.edu	37	6	42992729	42992729	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	RRP36-90	NM_033112	exon2	c.C137T	p.S46F	GCACATCTAACAT	.	71.0	26.0	101.0	0.0	.	Atlas-SNP
TTBK1	84630	hgsc.bcm.edu	37	6	43230559	43230559	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TTBK1-353	NM_032538	exon13	c.G1457A	p.R486H	CCTCGCGCCAGGC	.	112.0	26.0	50.0	0.0	.	Atlas-SNP
CAPN11	11131	hgsc.bcm.edu	37	6	44144037	44144037	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CAPN11-136	NM_007058	exon9	c.C963A	p.P321P	GAATCCCTGGGGC	.	125.0	32.0	147.0	0.0	.	Atlas-SNP
TINAG	27283	hgsc.bcm.edu	37	6	54185431	54185431	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TINAG-93	NM_014464	exon2	c.G410T	p.C137F	AAAACTGCAACTC	.	27.0	17.0	47.0	0.0	.	Atlas-SNP
PHF3	23469	hgsc.bcm.edu	37	6	64395054	64395054	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PHF3-229	NM_015153	exon3	c.C1431T	p.S477S	AAGTAGCGTTTCT	.	136.0	112.0	187.0	1.0	.	Atlas-SNP
COL19A1	1310	hgsc.bcm.edu	37	6	70873275	70873275	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	COL19A1-156	NM_001858	exon36	c.C2387T	p.A796V	CAGGAGCAAAAGG	.	82.0	64.0	108.0	0.0	.	Atlas-SNP
ARMC2	84071	hgsc.bcm.edu	37	6	109249377	109249377	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ARMC2-68	NM_032131	exon11	c.G1437A	p.T479T	CTGCACGGCAATG	.	117.0	59.0	211.0	0.0	.	Atlas-SNP
SESN1	27244	hgsc.bcm.edu	37	6	109308793	109308793	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SESN1-227	NM_014454	exon10	c.C1610T	p.A537V	AGTTCTGCTTGCA	.	50.0	32.0	62.0	0.0	.	Atlas-SNP
GPR6	2830	hgsc.bcm.edu	37	6	110300812	110300812	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	GPR6-90	NM_005284	exon1	c.G497A	p.R166H	TGGACCGCTACCT	.	75.0	60.0	102.0	0.0	.	Atlas-SNP
MED23	9439	hgsc.bcm.edu	37	6	131944491	131944491	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MED23-24	NM_015979	exon5	c.G396T	p.K132N	ATATACCTTGTAA	.	20.0	6.0	30.0	0.0	.	Atlas-SNP
PLAGL1	5325	hgsc.bcm.edu	37	6	144269185	144269185	+	Missense_Mutation	SNP	C	C	T	rs201696236		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PLAGL1-91	NM_001080951	exon7	c.G89A	p.R30Q	TACGGCCGCTCCC	.	272.0	232.0	310.0	1.0	.	Atlas-SNP
SNX9	51429	hgsc.bcm.edu	37	6	158349722	158349722	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SNX9-226	NM_016224	exon12	c.C1276T	p.R426C	TGGAAGCGCTGCA	.	55.0	48.0	80.0	0.0	.	Atlas-SNP
FNDC1	84624	hgsc.bcm.edu	37	6	159660704	159660704	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FNDC1-138	NM_032532	exon14	c.C4336T	p.P1446S	ACCCATCCCCCTA	.	51.0	31.0	87.0	0.0	.	Atlas-SNP
SLC22A3	6581	hgsc.bcm.edu	37	6	160864677	160864677	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SLC22A3-517	NM_021977	exon9	c.G1413A	p.S471S	AGTTTCGCTCTGT	.	42.0	35.0	55.0	0.0	.	Atlas-SNP
BAG6	7917	hgsc.bcm.edu	37	6	31615616	31615617	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	BAG6-154	NM_004639	exon7	c.558_559del	p.186_187del	.	.	17.0	10.0	34.0	0.0	.	Atlas-Indel
ZBTB9	221504	hgsc.bcm.edu	37	6	33423520	33423522	+	In_Frame_Del	DEL	GAG	GAG	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	GAG	GAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ZBTB9-90	NM_152735	exon2	c.642_644del	p.214_215del	.	.	61.0	16.0	76.0	0.0	.	Atlas-Indel
BTN2A2	10385	hgsc.bcm.edu	37	6	26384116	26384118	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	CTT	CTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	BTN2A2-90	NM_001197240	exon2	c.66_68del	p.22_23del	.	.	112.0	41.0	169.0	0.0	.	Pindel
CYP2W1	54905	hgsc.bcm.edu	37	7	1027032	1027032	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CYP2W1-90	NM_017781	exon7	c.C1008G	p.P336P	GACTCCCCGGCTG	.	45.0	20.0	7.0	0.0	.	Atlas-SNP
USP42	84132	hgsc.bcm.edu	37	7	6193968	6193968	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	USP42-659	NM_032172	exon15	c.C2783T	p.A928V	ACGCCGCGGCGCC	.	116.0	73.0	34.0	0.0	.	Atlas-SNP
PRR15	222171	hgsc.bcm.edu	37	7	29606205	29606205	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PRR15-46	NM_175887	exon2	c.G260A	p.R87H	GCCGCCGCAATTT	.	88.0	14.0	57.0	0.0	.	Atlas-SNP
MYO1G	64005	hgsc.bcm.edu	37	7	45014805	45014805	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MYO1G-137	NM_033054	exon5	c.G586A	p.V196M	CACCCACGTGCTG	.	179.0	80.0	161.0	0.0	.	Atlas-SNP
CCT6A	908	hgsc.bcm.edu	37	7	56125797	56125797	+	Splice_Site	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CCT6A-91	NM_001762	exon6	c.725+1G>A	.	GAAAACGTAAGTT	.	125.0	14.0	88.0	0.0	.	Atlas-SNP
ZNF727	442319	hgsc.bcm.edu	37	7	63537844	63537844	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	NM_001159522	exon4	c.T417C	p.A139A	GTCAGCTACCCGT	.	301.0	143.0	241.0	1.0	.	Atlas-SNP
DBF4	10926	hgsc.bcm.edu	37	7	87514295	87514295	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	DBF4-253	NM_006716	exon3	c.G221A	p.R74Q	TCTAGCGAGTTGA	.	70.0	4.0	43.0	0.0	.	Atlas-SNP
ZNF804B	219578	hgsc.bcm.edu	37	7	88964603	88964603	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ZNF804B-101	NM_181646	exon4	c.A2307G	p.I769M	TGATATAACAAAG	.	273.0	22.0	215.0	0.0	.	Atlas-SNP
AP4M1	9179	hgsc.bcm.edu	37	7	99701292	99701292	+	Missense_Mutation	SNP	G	G	A	rs201065427		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	AP4M1-90	NM_004722	exon6	c.G520A	p.V174I	CGCCCCGTCCTGT	.	96.0	44.0	90.0	0.0	G|0.999;A|0.000	Atlas-SNP
PLOD3	8985	hgsc.bcm.edu	37	7	100853911	100853911	+	Missense_Mutation	SNP	G	G	A	rs75592752	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PLOD3-92	NM_001084	exon13	c.C1402T	p.R468W	CACCCCGGATCAC	.	132.0	57.0	114.0	0.0	A|0.000;C|0.010;G|0.990	Atlas-SNP
PRKRIP1	79706	hgsc.bcm.edu	37	7	102038071	102038071	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PRKRIP1-91	NM_024653	exon2	c.A131G	p.K44R	AGGACAAAGCAGT	.	169.0	83.0	138.0	0.0	.	Atlas-SNP
NRCAM	4897	hgsc.bcm.edu	37	7	107820770	107820770	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	NRCAM-156	NM_001037132	exon22	c.G2748A	p.P916P	TAGCCCCGGCAAC	.	187.0	100.0	129.0	0.0	.	Atlas-SNP
SMO	6608	hgsc.bcm.edu	37	7	128843243	128843243	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SMO-2451	NM_005631	exon2	c.G350A	p.R117H	CCCCCCGCTGCTG	.	120.0	55.0	79.0	0.0	.	Atlas-SNP
AKR1D1	6718	hgsc.bcm.edu	37	7	137761290	137761290	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	AKR1D1-91	NM_001190906	exon1	c.G26A	p.R9H	GTCACCGCATACC	.	165.0	87.0	148.0	0.0	.	Atlas-SNP
JHDM1D	80853	hgsc.bcm.edu	37	7	139796487	139796487	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	JHDM1D-91	NM_030647	exon17	c.A2242T	p.T748S	AACACGTGGAATA	.	192.0	75.0	155.0	0.0	.	Atlas-SNP
ZYX	7791	hgsc.bcm.edu	37	7	143087734	143087734	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ZYX-90	NM_003461	exon10	c.G1678A	p.V560M	GGTCACGTGCTCT	.	180.0	17.0	165.0	0.0	.	Atlas-SNP
OR2A7	401427	hgsc.bcm.edu	37	7	143955878	143955878	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	OR2A7-23	NM_001005328	exon1	c.C844A	p.P282T	GCATGGGATTAAA	.	433.0	23.0	469.0	0.0	.	Atlas-SNP
NOS3	4846	hgsc.bcm.edu	37	7	150706627	150706627	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	NOS3-1011	NM_000603	exon20	c.G2466A	p.A822A	GCCGGCGCCCACT	.	85.0	41.0	10.0	0.0	.	Atlas-SNP
ABCF2	10061	hgsc.bcm.edu	37	7	150920935	150920935	+	Missense_Mutation	SNP	G	G	A	rs138611892		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ABCF2-90	NM_005692	exon5	c.C551T	p.A184V	CACTCCGCTGTGG	.	95.0	40.0	67.0	0.0	G|1.000;A|0.000	Atlas-SNP
RNF32	140545	hgsc.bcm.edu	37	7	156469120	156469120	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	RNF32-226	NM_001184996	exon9	c.G860A	p.R287H	CTCTGCGCCGGGA	.	176.0	94.0	57.0	0.0	.	Atlas-SNP
IQCE	23288	hgsc.bcm.edu	37	7	2641074	2641075	+	Splice_Site	INS	-	-	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	IQCE-226	NM_001100390	exon17	c.1561-1->A	.	.	.	82.0	13.0	52.0	0.0	.	Atlas-Indel
HOXA3	3200	hgsc.bcm.edu	37	7	27147667	27147667	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	HOXA3-153	NM_030661	exon3	c.1200delT	p.G400fs	.	.	76.0	37.0	23.0	0.0	.	Atlas-Indel
MLXIPL	51085	hgsc.bcm.edu	37	7	73008706	73008709	+	Frame_Shift_Del	DEL	CAAA	CAAA	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	CAAA	CAAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MLXIPL-91	NM_032953	exon16	c.2330_2333del	p.777_778del	.	.	59.0	29.0	61.0	0.0	.	Atlas-Indel
AP1S1	1174	hgsc.bcm.edu	37	7	100802405	100802405	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	AP1S1-226	NM_001283	exon4	c.356delT	p.M119fs	.	.	160.0	76.0	131.0	0.0	.	Atlas-Indel
PSMC2	5701	hgsc.bcm.edu	37	7	103006564	103006564	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PSMC2-90	NM_002803	exon9	c.797delC	p.T266fs	.	.	78.0	34.0	52.0	0.0	.	Atlas-Indel
SRPK2	6733	hgsc.bcm.edu	37	7	104767476	104767479	+	Frame_Shift_Del	DEL	CAAA	CAAA	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	CAAA	CAAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SRPK2-805	NM_182691	exon13	c.1751_1754del	p.584_585del	.	.	160.0	62.0	159.0	0.0	.	Atlas-Indel
NOBOX	135935	hgsc.bcm.edu	37	7	144096190	144096190	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	NOBOX-69	NM_001080413	exon8	c.1323delA	p.P441fs	.	.	88.0	49.0	69.0	0.0	.	Atlas-Indel
NOD1	10392	hgsc.bcm.edu	37	7	30491510	30491510	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	NOD1-229	NM_006092	exon6	c.1524delT	p.G508fs	.	.	93.0	26.0	90.0	0.0	.	Pindel
ANGPT2	285	hgsc.bcm.edu	37	8	6371316	6371316	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ANGPT2-91	NM_001118888	exon6	c.C926T	p.S309L	AGTTGCGAAACAA	.	56.0	45.0	86.0	0.0	.	Atlas-SNP
PDLIM2	64236	hgsc.bcm.edu	37	8	22447189	22447189	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PDLIM2-90	NM_021630	exon8	c.G1448A	p.R483Q	AGGGACGGGCGGC	.	183.0	152.0	295.0	2.0	.	Atlas-SNP
UNC5D	137970	hgsc.bcm.edu	37	8	35608159	35608159	+	Silent	SNP	G	G	A	rs145027081	alternate_allele	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	UNC5D-96	NM_080872	exon13	c.G1995A	p.A665A	CTTTGCGTGTCAT	.	186.0	145.0	248.0	0.0	G|1.000;C|0.000	Atlas-SNP
WHSC1L1	54904	hgsc.bcm.edu	37	8	38162210	38162210	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	WHSC1L1-658	NM_023034	exon14	c.G2506A	p.G836R	TGCTTCCGGCCGC	.	57.0	45.0	76.0	0.0	.	Atlas-SNP
HOOK3	84376	hgsc.bcm.edu	37	8	42823193	42823193	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	HOOK3-154	NM_032410	exon11	c.G958C	p.V320L	GGTCAAGTAGAAT	.	153.0	27.0	258.0	0.0	.	Atlas-SNP
CHD7	55636	hgsc.bcm.edu	37	8	61743055	61743055	+	Missense_Mutation	SNP	G	G	A	rs190548814		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CHD7-141	NM_017780	exon15	c.G3697A	p.G1233S	AAAGGCGGTGGTC	.	115.0	33.0	186.0	0.0	G|0.999;A|0.001	Atlas-SNP
TRIM55	84675	hgsc.bcm.edu	37	8	67049359	67049359	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TRIM55-230	NM_184085	exon4	c.C537T	p.L179L	CATCCTCGTGGGC	.	92.0	19.0	127.0	0.0	.	Atlas-SNP
CA3	761	hgsc.bcm.edu	37	8	86354416	86354416	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CA3-514	NM_005181	exon3	c.C347T	p.A116V	ATGCAGCGGAGGT	.	114.0	15.0	91.0	0.0	.	Atlas-SNP
POP1	10940	hgsc.bcm.edu	37	8	99146235	99146235	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	POP1-154	NM_001145860	exon6	c.C794T	p.A265V	TAAAGGCGCTTTC	.	140.0	66.0	124.0	0.0	.	Atlas-SNP
UBR5	51366	hgsc.bcm.edu	37	8	103297999	103297999	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	UBR5-761	NM_015902	exon39	c.G5226A	p.A1742A	CAAACCCGCTGAA	.	75.0	33.0	63.0	0.0	.	Atlas-SNP
ZFPM2	23414	hgsc.bcm.edu	37	8	106813889	106813889	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ZFPM2-139	NM_012082	exon8	c.C1579T	p.R527X	CATCGGCGACTGA	.	54.0	27.0	35.0	0.0	.	Atlas-SNP
TRPS1	7227	hgsc.bcm.edu	37	8	116616259	116616259	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TRPS1-229	NM_014112	exon4	c.A1937G	p.Y646C	CTTTCATAGTGAA	.	268.0	15.0	168.0	0.0	.	Atlas-SNP
COLEC10	10584	hgsc.bcm.edu	37	8	120101975	120101975	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	COLEC10-229	NM_006438	exon2	c.C205T	p.R69C	GTGGGACGCATGG	.	270.0	18.0	212.0	0.0	.	Atlas-SNP
MTBP	27085	hgsc.bcm.edu	37	8	121458716	121458716	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MTBP-228	NM_022045	exon2	c.T162C	p.I54I	AAGCATTAGTGCT	.	74.0	10.0	55.0	0.0	.	Atlas-SNP
TG	7038	hgsc.bcm.edu	37	8	133913766	133913766	+	Missense_Mutation	SNP	C	C	T	rs201453011		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TG-145	NM_003235	exon16	c.C3602T	p.T1201M	CTGGGACGCGCGT	.	210.0	106.0	196.0	0.0	C|0.999;T|0.001	Atlas-SNP
GRINA	2907	hgsc.bcm.edu	37	8	145066998	145066998	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	GRINA-90	NM_000837	exon7	c.G1105A	p.A369T	GGCCGCGCCAAGG	.	115.0	89.0	144.0	1.0	.	Atlas-SNP
ADAM28	10863	hgsc.bcm.edu	37	8	24167472	24167473	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ADAM28-228	NM_021777	exon3	c.216_217insA	p.L72fs	.	.	129.0	92.0	151.0	0.0	.	Atlas-Indel
BAG4	9530	hgsc.bcm.edu	37	8	38067995	38067995	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	BAG4-228	NM_001204878	exon4	c.1249delG	p.E417fs	.	.	54.0	29.0	72.0	0.0	.	Atlas-Indel
UBR5	51366	hgsc.bcm.edu	37	8	103289349	103289349	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	UBR5-761	NM_015902	exon45	c.6361delG	p.E2121fs	.	.	54.0	25.0	45.0	0.0	.	Atlas-Indel
FOCAD	54914	hgsc.bcm.edu	37	9	20881923	20881923	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	NM_017794	exon22	c.C2371T	p.R791C	ATGCCTCGTGGGA	.	80.0	42.0	58.0	0.0	.	Atlas-SNP
CAAP1	79886	hgsc.bcm.edu	37	9	26842344	26842344	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	NM_024828	exon6	c.G1041A	p.A347A	TTTAATCGCTCTT	.	103.0	48.0	93.0	0.0	.	Atlas-SNP
SMU1	55234	hgsc.bcm.edu	37	9	33056173	33056173	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SMU1-91	NM_018225	exon9	c.G1060A	p.E354K	TTGCTTCGTTAAC	.	85.0	41.0	71.0	0.0	.	Atlas-SNP
KIF24	347240	hgsc.bcm.edu	37	9	34306345	34306345	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	KIF24-22	NM_194313	exon3	c.C718T	p.R240C	CTCCACGACGTAC	.	123.0	8.0	86.0	0.0	.	Atlas-SNP
CEP78	84131	hgsc.bcm.edu	37	9	80854984	80854984	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CEP78-69	NM_001098802	exon2	c.G299A	p.R100K	CGATAAGATACAA	.	105.0	9.0	91.0	0.0	.	Atlas-SNP
PSMD5	5711	hgsc.bcm.edu	37	9	123586958	123586958	+	Missense_Mutation	SNP	C	C	T	rs149552567		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PSMD5-90	NM_001270427	exon6	c.G691A	p.V231M	ACTTCACGAATCC	.	64.0	33.0	63.0	0.0	C|1.000;T|0.000	Atlas-SNP
DAB2IP	153090	hgsc.bcm.edu	37	9	124519406	124519406	+	Silent	SNP	C	C	T	rs35510547	byfrequency;alternate_allele	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	DAB2IP-91	NM_032552	exon4	c.C393T	p.P131P	CAAGCCCGTGCAC	.	376.0	165.0	330.0	1.0	C|0.994;G|0.006	Atlas-SNP
HSPA5	3309	hgsc.bcm.edu	37	9	127998973	127998973	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	HSPA5-230	NM_005347	exon8	c.G1863T	p.K621N	CAGTTCCTTCTTC	.	140.0	8.0	122.0	0.0	.	Atlas-SNP
PRRC2B	84726	hgsc.bcm.edu	37	9	134340407	134340407	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PRRC2B-24	NM_013318	exon11	c.C1662A	p.P554P	AGTGCCCTGGTCT	.	293.0	18.0	265.0	0.0	.	Atlas-SNP
RNF208	727800	hgsc.bcm.edu	37	9	140115250	140115250	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	NM_031297	exon1	c.G415A	p.E139K	GGGGCTCGCCTGC	.	104.0	18.0	21.0	0.0	.	Atlas-SNP
RNF208	727800	hgsc.bcm.edu	37	9	140115251	140115251	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	NM_031297	exon1	c.C414T	p.G138G	GGGCTCGCCTGCC	.	100.0	10.0	18.0	0.0	.	Atlas-SNP
ARRDC1	92714	hgsc.bcm.edu	37	9	140508572	140508572	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ARRDC1-90	NM_152285	exon5	c.G524A	p.R175H	ATCTCCGCGGCTA	.	192.0	15.0	156.0	0.0	.	Atlas-SNP
EHMT1	79813	hgsc.bcm.edu	37	9	140676778	140676778	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	EHMT1-154	NM_024757	exon15	c.C2311T	p.Q771X	GAGCACCAGAATA	.	95.0	43.0	87.0	0.0	.	Atlas-SNP
SMARCA2	6595	hgsc.bcm.edu	37	9	2039777	2039791	+	In_Frame_Del	DEL	CAGCAGCAGCAGCAG	CAGCAGCAGCAGCAG	-	rs113070757	byfrequency;alternate_allele	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	CAGCAGCAGCAGCAG	CAGCAGCAGCAGCAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SMARCA2-653	NM_003070	exon4	c.666_680del	p.222_227del	.	.	139.0	48.0	89.0	0.0	-|0.500;CAG|0.500	Atlas-Indel
PTCH1	5727	hgsc.bcm.edu	37	9	98231105	98231105	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PTCH1-3532	NM_001083604	exon14	c.1726delT	p.C576fs	.	.	181.0	76.0	173.0	0.0	.	Atlas-Indel
RUSC2	9853	hgsc.bcm.edu	37	9	35560687	35560688	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	RUSC2-91	NM_014806	exon10	c.4049_4050del	p.1350_1350del	.	.	69.0	24.0	54.0	0.0	.	Pindel
ASMTL	8623	hgsc.bcm.edu	37	X	1546767	1546767	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ASMTL-62	NM_001173473	exon7	c.G583A	p.A195T	TGCCCGCGTCCCT	.	98.0	82.0	25.0	0.0	.	Atlas-SNP
PNPLA4	8228	hgsc.bcm.edu	37	X	7890071	7890071	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PNPLA4-130	NM_004650	exon3	c.C249T	p.P83P	ATAACCGGGCGTT	.	242.0	202.0	263.0	1.0	.	Atlas-SNP
USP9X	8239	hgsc.bcm.edu	37	X	41075161	41075161	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	USP9X-563	NM_001039590	exon35	c.G5341A	p.V1781I	GATACCGTAAAGC	.	119.0	9.0	143.0	0.0	.	Atlas-SNP
KCND1	3750	hgsc.bcm.edu	37	X	48826543	48826543	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	KCND1-133	NM_004979	exon1	c.G136A	p.V46M	CGCTCACGTTCAC	.	126.0	109.0	225.0	1.0	.	Atlas-SNP
TEX11	56159	hgsc.bcm.edu	37	X	69774510	69774510	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TEX11-178	NM_001003811	exon27	c.A2326G	p.T776A	CAATTGTTTCAAA	.	161.0	32.0	246.0	0.0	.	Atlas-SNP
CXCR3	2833	hgsc.bcm.edu	37	X	70836820	70836820	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CXCR3-660	NM_001504	exon2	c.G502A	p.V168M	GGGTCACGCGGGC	.	171.0	15.0	198.0	0.0	.	Atlas-SNP
ZDHHC15	158866	hgsc.bcm.edu	37	X	74636938	74636938	+	Silent	SNP	G	G	A	rs192529997		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ZDHHC15-132	NM_001146256	exon9	c.C924T	p.N308N	ATCCTCGTTGTCT	.	100.0	76.0	200.0	0.0	G|0.998;A|0.002	Atlas-SNP
PCDH11X	27328	hgsc.bcm.edu	37	X	91132408	91132408	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PCDH11X-193	NM_032968	exon2	c.C1169T	p.A390V	AGGATGCGGACCA	.	313.0	261.0	413.0	2.0	.	Atlas-SNP
SRPX2	27286	hgsc.bcm.edu	37	X	99905848	99905848	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SRPX2-132	NM_014467	exon3	c.C149T	p.A50V	CTCCTGCCCTGGA	.	89.0	79.0	118.0	0.0	.	Atlas-SNP
RGAG1	57529	hgsc.bcm.edu	37	X	109695052	109695052	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	RGAG1-132	NM_020769	exon3	c.G1207C	p.V403L	CCACCAGTAAGAG	.	98.0	6.0	177.0	0.0	.	Atlas-SNP
SLITRK4	139065	hgsc.bcm.edu	37	X	142717897	142717897	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SLITRK4-193	NM_173078	exon2	c.C1028T	p.P343L	GGTGCCGGGCAAG	.	212.0	177.0	272.0	1.0	.	Atlas-SNP
FMR1NB	158521	hgsc.bcm.edu	37	X	147090160	147090160	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FMR1NB-131	NM_152578	exon4	c.G561T	p.M187I	GCAAATGTTTGGG	.	90.0	75.0	129.0	0.0	.	Atlas-SNP
MAGEA11	4110	hgsc.bcm.edu	37	X	148797592	148797592	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MAGEA11-132	NM_001011544	exon5	c.C359T	p.A120V	AGGCTGCCTTCTT	.	198.0	163.0	301.0	0.0	.	Atlas-SNP
ATP2B3	492	hgsc.bcm.edu	37	X	152815531	152815531	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ATP2B3-109	NM_021949	exon10	c.G1610A	p.R537H	TCCCACGCCAGGT	.	102.0	86.0	151.0	0.0	.	Atlas-SNP
SHROOM4	57477	hgsc.bcm.edu	37	X	50350688	50350690	+	In_Frame_Del	DEL	CCT	CCT	-	rs143151534		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	CCT	CCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SHROOM4-131	NM_020717	exon6	c.3453_3455del	p.1151_1152del	.	.	90.0	65.0	105.0	0.0	-|0.701;TCC|0.299	Atlas-Indel
ZNF711	7552	hgsc.bcm.edu	37	X	84510411	84510413	+	In_Frame_Del	DEL	ATC	ATC	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	ATC	ATC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ZNF711-134	NM_021998	exon4	c.225_227del	p.75_76del	.	.	283.0	47.0	395.0	0.0	.	Atlas-Indel
AFF2	2334	hgsc.bcm.edu	37	X	147733548	147733548	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	AFF2-135	NM_001169122	exon2	c.75delT	p.L25fs	.	.	276.0	157.0	314.0	0.0	.	Atlas-Indel
TSPAN7	7102	hgsc.bcm.edu	37	X	38535027	38535027	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TSPAN7-63	NM_004615	exon5	c.509delT	p.I170fs	.	.	169.0	84.0	207.0	0.0	.	Pindel
ATRX	546	hgsc.bcm.edu	37	X	76938582	76938585	+	Frame_Shift_Del	DEL	TGAT	TGAT	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	TGAT	TGAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ATRX-248	NM_138270	exon8	c.2050_2053del	p.684_685del	.	.	28.0	17.0	40.0	0.0	.	Pindel
