Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Algorithm
ECHDC3	79746	hgsc.bcm.edu	37	10	11805375	11805375	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	ECHDC3-90	NM_024693	exon5	c.G744A	p.V248V	GGTGGTGTCCCTG	.	41.0	7.0	33.0	0.0	.	Atlas-SNP
SLIT1	6585	hgsc.bcm.edu	37	10	98799839	98799839	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	SLIT1-94	NM_003061	exon21	c.C2203T	p.P735S	CCTGTGGGCACTG	.	203.0	39.0	222.0	0.0	.	Atlas-SNP
PC	5091	hgsc.bcm.edu	37	11	66636324	66636324	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	PC-228	NM_001040716	exon10	c.A1015G	p.I339V	CGGTGATCTCCTC	.	79.0	7.0	100.0	0.0	.	Atlas-SNP
KRT1	3848	hgsc.bcm.edu	37	12	53069243	53069243	+	Missense_Mutation	SNP	T	T	C	rs77846840		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	KRT1-92	NM_006121	exon9	c.A1669G	p.S557G	AGCTGCTACCTCC	.	15.0	4.0	15.0	0.0	T|0.500;C|0.500	Atlas-SNP
DNAJC14	85406	hgsc.bcm.edu	37	12	56215846	56215846	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	DNAJC14-229	NM_032364	exon7	c.C2024T	p.A675V	GAGGCTGCAGCGG	.	66.0	31.0	85.0	0.0	.	Atlas-SNP
MMP19	4327	hgsc.bcm.edu	37	12	56231788	56231788	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	MMP19-227	NM_002429	exon7	c.C899T	p.P300L	CCACGGGGCCCTG	.	56.0	15.0	87.0	0.0	.	Atlas-SNP
MBD6	114785	hgsc.bcm.edu	37	12	57922471	57922471	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	MBD6-516	NM_052897	exon11	c.A2843C	p.K948T	TCAGAAAGTCTCG	.	88.0	8.0	116.0	0.0	.	Atlas-SNP
WIF1	11197	hgsc.bcm.edu	37	12	65448919	65448919	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	WIF1-1110	NM_007191	exon9	c.C997A	p.H333N	TTCCATGCCAACC	.	68.0	6.0	58.0	0.0	.	Atlas-SNP
ERCC5	2073	hgsc.bcm.edu	37	13	103498624	103498624	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	ERCC5-689	NM_000123	exon1	c.T8A	p.V3D	TGGGGGTCCAGGG	.	22.0	14.0	32.0	0.0	.	Atlas-SNP
LRP10	26020	hgsc.bcm.edu	37	14	23345363	23345363	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	LRP10-90	NM_014045	exon5	c.C1206T	p.G402G	GCCTGGCAATTTC	.	71.0	9.0	68.0	0.0	.	Atlas-SNP
ADAM21	8747	hgsc.bcm.edu	37	14	70926008	70926008	+	Silent	SNP	A	A	C	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	ADAM21-92	NM_003813	exon2	c.A1792C	p.R598R	CATTTAAGGATGA	.	313.0	146.0	363.0	1.0	.	Atlas-SNP
FAM161B	145483	hgsc.bcm.edu	37	14	74411292	74411292	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	FAM161B-91	NM_152445	exon3	c.A860T	p.H287L	TAGACATGTGCAG	.	65.0	27.0	79.0	0.0	.	Atlas-SNP
CEP152	22995	hgsc.bcm.edu	37	15	49034286	49034286	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	CEP152-70	NM_001194998	exon25	c.C3847A	p.R1283S	TATAACGAAGCAT	.	75.0	4.0	66.0	0.0	.	Atlas-SNP
PML	5371	hgsc.bcm.edu	37	15	74335395	74335395	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	PML-1083	NM_033238	exon8	c.C1776T	p.T592T	CAGCACCCTCAGG	.	75.0	9.0	94.0	0.0	.	Atlas-SNP
NLRP1	22861	hgsc.bcm.edu	37	17	5424256	5424256	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	NLRP1-274	NM_033004	exon14	c.G3860A	p.G1287D	CGACAGCCCATAT	.	24.0	21.0	46.0	0.0	.	Atlas-SNP
MFSD6L	162387	hgsc.bcm.edu	37	17	8702218	8702218	+	Missense_Mutation	SNP	C	C	T	rs111726322	byfrequency;alternate_allele	TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	MFSD6L-90	NM_152599	exon1	c.G221A	p.R74Q	CTTTTCCGGTAGC	.	67.0	20.0	83.0	0.0	C|0.986;A|0.014	Atlas-SNP
CD300A	11314	hgsc.bcm.edu	37	17	72470793	72470793	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	CD300A-92	NM_001256841	exon2	c.C163A	p.Q55K	AGCATCCAGGAGG	.	135.0	25.0	170.0	0.0	.	Atlas-SNP
QTRT1	81890	hgsc.bcm.edu	37	19	10823651	10823651	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	QTRT1-91	NM_031209	exon9	c.G994A	p.A332T	CTGCACGCACTGC	.	58.0	4.0	87.0	0.0	.	Atlas-SNP
UPF1	5976	hgsc.bcm.edu	37	19	18966869	18966869	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	UPF1-91	NM_002911	exon12	c.C1680G	p.A560A	TCTGGCCCTGCAC	.	119.0	24.0	127.0	0.0	.	Atlas-SNP
CSMD2	114784	hgsc.bcm.edu	37	1	34276428	34276428	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	CSMD2-103	NM_052896	exon10	c.C1242T	p.G414G	GATGATGCCCGAG	.	16.0	6.0	46.0	0.0	.	Atlas-SNP
OR10J1	26476	hgsc.bcm.edu	37	1	159410014	159410014	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	OR10J1-69	NM_012351	exon1	c.G466T	p.V156F	CAACTTGTCCTGG	.	800.0	83.0	239.0	0.0	.	Atlas-SNP
FMO1	2326	hgsc.bcm.edu	37	1	171254505	171254505	+	Missense_Mutation	SNP	G	G	A	rs28360433	byfrequency	TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	FMO1-515	NM_002021	exon9	c.G1421A	p.R474H	AGTTCCGCTTGAC	.	99.0	14.0	109.0	0.0	G|0.994;A|0.006	Atlas-SNP
PM20D1	148811	hgsc.bcm.edu	37	1	205797785	205797785	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	PM20D1-69	NM_152491	exon13	c.C1472G	p.T491R	TGGTCTGTGTCAG	.	54.0	9.0	67.0	0.0	.	Atlas-SNP
NLRP3	114548	hgsc.bcm.edu	37	1	247587746	247587746	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	NLRP3-674	NM_001243133	exon3	c.G995A	p.S332N	TGAGCAGCCTCAT	.	84.0	28.0	110.0	0.0	.	Atlas-SNP
BPIFB4	149954	hgsc.bcm.edu	37	20	31671359	31671359	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	.	NM_182519	exon3	c.G356A	p.R119Q	ACCTCCGAAACAG	.	125.0	8.0	138.0	0.0	.	Atlas-SNP
CTCFL	140690	hgsc.bcm.edu	37	20	56090847	56090847	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	CTCFL-292	NM_001269047	exon6	c.G1103A	p.R368H	AAGGGGCGCTCCC	.	44.0	5.0	39.0	0.0	.	Atlas-SNP
OLIG2	10215	hgsc.bcm.edu	37	21	34399459	34399459	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	OLIG2-629	NM_005806	exon2	c.G289A	p.D97N	AAGAAGGACAAGA	.	132.0	25.0	155.0	0.0	.	Atlas-SNP
RABL2B	11158	hgsc.bcm.edu	37	22	51208398	51208399	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	RABL2B-131	NM_001130921	exon7	c.344_345insT	p.W115fs	.	.	116.0	30.0	185.0	0.0	.	Atlas-Indel
DCTN1	1639	hgsc.bcm.edu	37	2	74588719	74588719	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	DCTN1-95	NM_023019	exon27	c.G3342A	p.V1114V	GAAGGTCACTTTG	.	34.0	6.0	87.0	0.0	.	Atlas-SNP
DNAH6	1768	hgsc.bcm.edu	37	2	84924798	84924798	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	DNAH6-69	NM_001370	exon47	c.G7624T	p.A2542S	TTAGCGGCCACCA	.	389.0	44.0	96.0	0.0	.	Atlas-SNP
FAM124B	79843	hgsc.bcm.edu	37	2	225266236	225266236	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	FAM124B-92	NM_001122779	exon1	c.C250T	p.R84C	GGACGCGAAATAG	.	93.0	19.0	110.0	0.0	.	Atlas-SNP
DZIP3	9666	hgsc.bcm.edu	37	3	108407467	108407467	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	DZIP3-91	NM_014648	exon30	c.A3298G	p.N1100D	AATGTTAATTGTG	.	179.0	95.0	260.0	0.0	.	Atlas-SNP
CP	1356	hgsc.bcm.edu	37	3	148896230	148896230	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	CP-515	NM_000096	exon16	c.G2850C	p.E950D	GAATTCCTCATCA	.	88.0	15.0	107.0	0.0	.	Atlas-SNP
SLITRK3	22865	hgsc.bcm.edu	37	3	164908554	164908554	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	SLITRK3-100	NM_014926	exon2	c.C65T	p.T22I	GCAATTGTGCTTA	.	67.0	15.0	113.0	0.0	.	Atlas-SNP
CHRNA9	55584	hgsc.bcm.edu	37	4	40337918	40337918	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	CHRNA9-96	NM_017581	exon2	c.C139T	p.R47C	GCTCTTCGTCCAG	.	144.0	8.0	133.0	0.0	.	Atlas-SNP
LOX	4015	hgsc.bcm.edu	37	5	121405754	121405754	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	LOX-650	NM_001178102	exon5	c.T551G	p.I184S	GGTGAAATTGTGC	.	247.0	16.0	117.0	0.0	.	Atlas-SNP
PHAX	51808	hgsc.bcm.edu	37	5	125939673	125939673	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	PHAX-90	NM_032177	exon2	c.G508C	p.D170H	ACAAAAGATCTAG	.	268.0	16.0	96.0	0.0	.	Atlas-SNP
CDKN2AIPNL	91368	hgsc.bcm.edu	37	5	133745680	133745680	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	CDKN2AIPNL-68	NM_080656	exon2	c.C253G	p.L85V	CTAAAAGGTCTTT	.	103.0	11.0	65.0	0.0	.	Atlas-SNP
KLHL3	26249	hgsc.bcm.edu	37	5	137056267	137056267	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	KLHL3-90	NM_017415	exon2	c.G21A	p.K7K	GCTCAGCTTGACA	.	90.0	13.0	97.0	0.0	.	Atlas-SNP
PCDHGB1	56104	hgsc.bcm.edu	37	5	140731780	140731780	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	PCDHGB1-33	NM_018922	exon1	c.C1953T	p.S651S	ACTCTCCGCCACC	.	57.0	12.0	73.0	0.0	.	Atlas-SNP
E2F3	1871	hgsc.bcm.edu	37	6	20488470	20488470	+	Missense_Mutation	SNP	G	G	A	rs147333935	byfrequency	TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	E2F3-414	NM_001243076	exon6	c.G733A	p.A245T	AAACCCGCTTCCA	.	78.0	14.0	86.0	0.0	G|0.999;A|0.001	Atlas-SNP
OR2B6	26212	hgsc.bcm.edu	37	6	27925596	27925596	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	OR2B6-69	NM_012367	exon1	c.C578T	p.T193I	AGACAACAGCAAA	.	129.0	54.0	177.0	0.0	.	Atlas-SNP
GRIK2	2898	hgsc.bcm.edu	37	6	102511871	102511871	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	GRIK2-157	NM_175768	exon16	c.C2597A	p.P866Q	ACCATCCAGACAC	.	171.0	42.0	212.0	0.0	.	Atlas-SNP
RGS22	26166	hgsc.bcm.edu	37	8	101016248	101016248	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	RGS22-140	NM_015668	exon17	c.C2533T	p.P845S	CTGCAGGAACATT	.	92.0	17.0	117.0	0.0	.	Atlas-SNP
HHLA1	10086	hgsc.bcm.edu	37	8	133090151	133090151	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	.	NM_001145095	exon11	c.C993T	p.S331S	GGGCACGGACGAT	.	99.0	45.0	115.0	0.0	.	Atlas-SNP
KIAA1432	57589	hgsc.bcm.edu	37	9	5754924	5754924	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	KIAA1432-90	NM_001206557	exon14	c.A1575G	p.Q525Q	CCGTCAAGAAGAG	.	26.0	6.0	17.0	0.0	.	Atlas-SNP
COL5A1	1289	hgsc.bcm.edu	37	9	137710730	137710730	+	Missense_Mutation	SNP	G	G	A	rs183114696		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	COL5A1-524	NM_000093	exon56	c.G4375A	p.G1459S	CCGGACGGTCCCC	.	70.0	8.0	56.0	0.0	G|0.999;A|0.000	Atlas-SNP
AKAP4	8852	hgsc.bcm.edu	37	X	49957052	49957052	+	Missense_Mutation	SNP	T	T	C	rs61751432	alternate_allele	TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	AKAP4-540	NM_003886	exon5	c.A2312G	p.Q771R	TGCTTCTGCAAGC	.	102.0	14.0	100.0	0.0	.	Atlas-SNP
SHROOM4	57477	hgsc.bcm.edu	37	X	50377344	50377344	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	SHROOM4-131	NM_020717	exon4	c.C1729T	p.R577C	TCGAGCGGCCCCG	.	46.0	10.0	43.0	0.0	.	Atlas-SNP
COL4A6	1288	hgsc.bcm.edu	37	X	107457358	107457358	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	COL4A6-199	NM_033641	exon6	c.G425T	p.G142V	AGAAGCCCAGGAT	.	64.0	24.0	68.0	0.0	.	Atlas-SNP
GPR50	9248	hgsc.bcm.edu	37	X	150349287	150349287	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	GPR50-176	NM_004224	exon2	c.C1232G	p.S411C	GCCACTCCAAGGC	.	92.0	16.0	92.0	0.0	.	Atlas-SNP
