Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Algorithm
CRYAB	1410	hgsc.bcm.edu	37	11	111782365	111782365	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LM-01A-11D-A29I-10	TCGA-OR-A5LM-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a6b592a8-0b94-419c-9c61-562fe685e97a	b4655f57-0fd5-4e2a-9df1-8fc37b6582d2	.	CRYAB-514	NM_001885	exon1	c.C84A	p.F28L	CTCTCCGAAGAAC	.	51.0	10.0	72.0	0.0	.	Atlas-SNP
CRYAB	1410	hgsc.bcm.edu	37	11	111782366	111782366	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5LM-01A-11D-A29I-10	TCGA-OR-A5LM-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a6b592a8-0b94-419c-9c61-562fe685e97a	b4655f57-0fd5-4e2a-9df1-8fc37b6582d2	.	CRYAB-514	NM_001885	exon1	c.T83A	p.F28Y	TCTCCGAAGAACT	.	50.0	10.0	72.0	0.0	.	Atlas-SNP
ITPR2	3709	hgsc.bcm.edu	37	12	26774092	26774092	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LM-01A-11D-A29I-10	TCGA-OR-A5LM-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a6b592a8-0b94-419c-9c61-562fe685e97a	b4655f57-0fd5-4e2a-9df1-8fc37b6582d2	.	ITPR2-542	NM_002223	exon26	c.G3426A	p.G1142G	ACTTTCCCCTATT	.	257.0	65.0	132.0	0.0	.	Atlas-SNP
ACADS	35	hgsc.bcm.edu	37	12	121176680	121176680	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LM-01A-11D-A29I-10	TCGA-OR-A5LM-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a6b592a8-0b94-419c-9c61-562fe685e97a	b4655f57-0fd5-4e2a-9df1-8fc37b6582d2	.	ACADS-90	NM_000017	exon8	c.G991A	p.A331T	TGGCGCGCTGCCA	.	213.0	23.0	131.0	0.0	.	Atlas-SNP
SPPL3	121665	hgsc.bcm.edu	37	12	121206275	121206275	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LM-01A-11D-A29I-10	TCGA-OR-A5LM-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a6b592a8-0b94-419c-9c61-562fe685e97a	b4655f57-0fd5-4e2a-9df1-8fc37b6582d2	.	.	NM_139015	exon8	c.A626G	p.Y209C	AAGATGTAGGCTG	.	95.0	32.0	63.0	0.0	.	Atlas-SNP
GOLGA3	2802	hgsc.bcm.edu	37	12	133378462	133378462	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LM-01A-11D-A29I-10	TCGA-OR-A5LM-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a6b592a8-0b94-419c-9c61-562fe685e97a	b4655f57-0fd5-4e2a-9df1-8fc37b6582d2	.	GOLGA3-95	NM_001172557	exon8	c.C1691T	p.S564L	GCCTGCGACGCCT	.	53.0	28.0	40.0	0.0	.	Atlas-SNP
FAM194B	220081	hgsc.bcm.edu	37	13	46170726	46170726	+	Missense_Mutation	SNP	A	A	G	rs28548352		TCGA-OR-A5LM-01A-11D-A29I-10	TCGA-OR-A5LM-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a6b592a8-0b94-419c-9c61-562fe685e97a	b4655f57-0fd5-4e2a-9df1-8fc37b6582d2	.	FAM194B-68	NM_182542	exon3	c.T415C	p.Y139H	CCAGATACTCTTC	.	63.0	5.0	30.0	0.0	.	Atlas-SNP
FAM194B	220081	hgsc.bcm.edu	37	13	46170728	46170728	+	Missense_Mutation	SNP	T	T	C	rs45625342		TCGA-OR-A5LM-01A-11D-A29I-10	TCGA-OR-A5LM-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a6b592a8-0b94-419c-9c61-562fe685e97a	b4655f57-0fd5-4e2a-9df1-8fc37b6582d2	.	FAM194B-68	NM_182542	exon3	c.A413G	p.E138G	AGATACTCTTCCT	.	63.0	8.0	30.0	0.0	.	Atlas-SNP
FAM194B	220081	hgsc.bcm.edu	37	13	46170735	46170735	+	Missense_Mutation	SNP	C	C	T	rs28460344		TCGA-OR-A5LM-01A-11D-A29I-10	TCGA-OR-A5LM-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a6b592a8-0b94-419c-9c61-562fe685e97a	b4655f57-0fd5-4e2a-9df1-8fc37b6582d2	.	FAM194B-68	NM_182542	exon3	c.G406A	p.E136K	CTTCCTCCTCCAG	.	60.0	9.0	29.0	0.0	.	Atlas-SNP
PDPR	55066	hgsc.bcm.edu	37	16	70176291	70176291	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LM-01A-11D-A29I-10	TCGA-OR-A5LM-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a6b592a8-0b94-419c-9c61-562fe685e97a	b4655f57-0fd5-4e2a-9df1-8fc37b6582d2	.	PDPR-135	NM_017990	exon12	c.G1470A	p.K490K	CGACAAGGGTAAG	.	145.0	13.0	106.0	0.0	.	Atlas-SNP
CDT1	81620	hgsc.bcm.edu	37	16	88872235	88872235	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5LM-01A-11D-A29I-10	TCGA-OR-A5LM-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a6b592a8-0b94-419c-9c61-562fe685e97a	b4655f57-0fd5-4e2a-9df1-8fc37b6582d2	.	CDT1-227	NM_030928	exon5	c.A790T	p.R264W	ACCAGGAGGTCAG	.	145.0	27.0	91.0	0.0	.	Atlas-SNP
KRTAP4-7	100132476	hgsc.bcm.edu	37	17	39240791	39240791	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5LM-01A-11D-A29I-10	TCGA-OR-A5LM-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a6b592a8-0b94-419c-9c61-562fe685e97a	b4655f57-0fd5-4e2a-9df1-8fc37b6582d2	.	.	NM_033061	exon1	c.C333G	p.R111R	CTGCCGCCCCAGC	.	27.0	11.0	31.0	0.0	.	Atlas-SNP
KRTAP4-7	100132476	hgsc.bcm.edu	37	17	39240796	39240796	+	Missense_Mutation	SNP	G	G	C	rs199957151		TCGA-OR-A5LM-01A-11D-A29I-10	TCGA-OR-A5LM-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a6b592a8-0b94-419c-9c61-562fe685e97a	b4655f57-0fd5-4e2a-9df1-8fc37b6582d2	.	.	NM_033061	exon1	c.G338C	p.S113T	GCCCCAGCTGCTG	.	27.0	15.0	30.0	0.0	.	Atlas-SNP
SPOP	8405	hgsc.bcm.edu	37	17	47699369	47699369	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LM-01A-11D-A29I-10	TCGA-OR-A5LM-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a6b592a8-0b94-419c-9c61-562fe685e97a	b4655f57-0fd5-4e2a-9df1-8fc37b6582d2	SPOP,NS,carcinoma,0	SPOP-660	NM_001007229	exon4	c.G139C	p.E47Q	CCATTTCCTCCCG	.	90.0	14.0	113.0	0.0	.	Atlas-SNP
NUMBL	9253	hgsc.bcm.edu	37	19	41173886	41173886	+	Silent	SNP	C	C	T	rs62640392		TCGA-OR-A5LM-01A-11D-A29I-10	TCGA-OR-A5LM-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a6b592a8-0b94-419c-9c61-562fe685e97a	b4655f57-0fd5-4e2a-9df1-8fc37b6582d2	.	NUMBL-637	NM_004756	exon10	c.G1317A	p.Q439Q	CTGCTGCTGCTGC	.	32.0	4.0	29.0	0.0	C|0.984;T|0.016	Atlas-SNP
NUMBL	9253	hgsc.bcm.edu	37	19	41173898	41173898	+	Silent	SNP	T	T	C	rs79747129		TCGA-OR-A5LM-01A-11D-A29I-10	TCGA-OR-A5LM-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a6b592a8-0b94-419c-9c61-562fe685e97a	b4655f57-0fd5-4e2a-9df1-8fc37b6582d2	.	NUMBL-637	NM_004756	exon10	c.A1305G	p.Q435Q	CTGCTGTTGCTGT	.	33.0	8.0	14.0	0.0	.	Atlas-SNP
NUMBL	9253	hgsc.bcm.edu	37	19	41173904	41173904	+	Silent	SNP	T	T	C	rs79658769		TCGA-OR-A5LM-01A-11D-A29I-10	TCGA-OR-A5LM-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a6b592a8-0b94-419c-9c61-562fe685e97a	b4655f57-0fd5-4e2a-9df1-8fc37b6582d2	.	NUMBL-637	NM_004756	exon10	c.A1299G	p.Q433Q	TTGCTGTTGCTGC	.	33.0	4.0	33.0	0.0	C|1.000;|0.000	Atlas-SNP
CDC42EP1	11135	hgsc.bcm.edu	37	22	37964429	37964429	+	Missense_Mutation	SNP	T	T	C	rs62235034	byfrequency	TCGA-OR-A5LM-01A-11D-A29I-10	TCGA-OR-A5LM-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a6b592a8-0b94-419c-9c61-562fe685e97a	b4655f57-0fd5-4e2a-9df1-8fc37b6582d2	.	CDC42EP1-90	NM_152243	exon3	c.T778C	p.S260P	AACCCCTCAGCAC	.	5.0	5.0	12.0	0.0	T|0.643;C|0.357	Atlas-SNP
CPSF3	51692	hgsc.bcm.edu	37	2	9576490	9576490	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LM-01A-11D-A29I-10	TCGA-OR-A5LM-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a6b592a8-0b94-419c-9c61-562fe685e97a	b4655f57-0fd5-4e2a-9df1-8fc37b6582d2	.	CPSF3-153	NM_016207	exon7	c.G760T	p.D254Y	ATTCTAGGTATGC	.	97.0	5.0	77.0	0.0	.	Atlas-SNP
IQCF6	440956	hgsc.bcm.edu	37	3	51812856	51812856	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LM-01A-11D-A29I-10	TCGA-OR-A5LM-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a6b592a8-0b94-419c-9c61-562fe685e97a	b4655f57-0fd5-4e2a-9df1-8fc37b6582d2	.	.	NM_001143833	exon2	c.T107C	p.L36P	AGTCTTAGTGCCA	.	106.0	24.0	111.0	0.0	.	Atlas-SNP
PTPRG	5793	hgsc.bcm.edu	37	3	62177191	62177191	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LM-01A-11D-A29I-10	TCGA-OR-A5LM-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a6b592a8-0b94-419c-9c61-562fe685e97a	b4655f57-0fd5-4e2a-9df1-8fc37b6582d2	.	PTPRG-419	NM_002841	exon9	c.C1082T	p.T361M	ACCAGACGGCACT	.	120.0	28.0	109.0	0.0	.	Atlas-SNP
NLGN1	22871	hgsc.bcm.edu	37	3	173998498	173998498	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LM-01A-11D-A29I-10	TCGA-OR-A5LM-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a6b592a8-0b94-419c-9c61-562fe685e97a	b4655f57-0fd5-4e2a-9df1-8fc37b6582d2	.	NLGN1-231	NM_014932	exon7	c.C1877A	p.T626K	CTACAACAACTAA	.	65.0	15.0	107.0	0.0	.	Atlas-SNP
TEC	7006	hgsc.bcm.edu	37	4	48139493	48139493	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LM-01A-11D-A29I-10	TCGA-OR-A5LM-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a6b592a8-0b94-419c-9c61-562fe685e97a	b4655f57-0fd5-4e2a-9df1-8fc37b6582d2	.	TEC-1004	NM_003215	exon18	c.C1836T	p.F612F	ATCTTCGAAAGAA	.	51.0	15.0	50.0	0.0	.	Atlas-SNP
ADAMTS16	170690	hgsc.bcm.edu	37	5	5303488	5303488	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LM-01A-11D-A29I-10	TCGA-OR-A5LM-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a6b592a8-0b94-419c-9c61-562fe685e97a	b4655f57-0fd5-4e2a-9df1-8fc37b6582d2	.	ADAMTS16-275	NM_139056	exon19	c.C2897A	p.P966Q	CAGTCCCGGCCAG	.	28.0	6.0	43.0	0.0	.	Atlas-SNP
ASCC3	10973	hgsc.bcm.edu	37	6	101173535	101173535	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LM-01A-11D-A29I-10	TCGA-OR-A5LM-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a6b592a8-0b94-419c-9c61-562fe685e97a	b4655f57-0fd5-4e2a-9df1-8fc37b6582d2	.	ASCC3-96	NM_006828	exon11	c.G1782C	p.K594N	AACACTCTTTCTT	.	113.0	19.0	99.0	0.0	.	Atlas-SNP
PSMC2	5701	hgsc.bcm.edu	37	7	103008174	103008174	+	Silent	SNP	A	A	T	novel		TCGA-OR-A5LM-01A-11D-A29I-10	TCGA-OR-A5LM-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a6b592a8-0b94-419c-9c61-562fe685e97a	b4655f57-0fd5-4e2a-9df1-8fc37b6582d2	.	PSMC2-90	NM_002803	exon11	c.A1062T	p.I354I	CCACATATTTAAG	.	38.0	12.0	35.0	0.0	.	Atlas-SNP
TMEM209	84928	hgsc.bcm.edu	37	7	129821552	129821552	+	Missense_Mutation	SNP	T	T	C	rs117369236		TCGA-OR-A5LM-01A-11D-A29I-10	TCGA-OR-A5LM-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a6b592a8-0b94-419c-9c61-562fe685e97a	b4655f57-0fd5-4e2a-9df1-8fc37b6582d2	.	TMEM209-92	NM_032842	exon9	c.A1031G	p.N344S	GTCTCATTGATCC	.	104.0	13.0	51.0	0.0	T|0.995;C|0.005	Atlas-SNP
BRF2	55290	hgsc.bcm.edu	37	8	37704589	37704589	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LM-01A-11D-A29I-10	TCGA-OR-A5LM-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a6b592a8-0b94-419c-9c61-562fe685e97a	b4655f57-0fd5-4e2a-9df1-8fc37b6582d2	.	BRF2-90	NM_018310	exon3	c.C319T	p.R107X	CCGCTCGGATGCC	.	126.0	24.0	134.0	0.0	.	Atlas-SNP
PHEX	5251	hgsc.bcm.edu	37	X	22129587	22129587	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LM-01A-11D-A29I-10	TCGA-OR-A5LM-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a6b592a8-0b94-419c-9c61-562fe685e97a	b4655f57-0fd5-4e2a-9df1-8fc37b6582d2	.	PHEX-132	NM_000444	exon10	c.C1082T	p.T361I	ACAGGACCATTGC	.	54.0	11.0	48.0	0.0	.	Atlas-SNP
CXorf22	170063	hgsc.bcm.edu	37	X	35944286	35944286	+	Splice_Site	SNP	G	G	C	novel		TCGA-OR-A5LM-01A-11D-A29I-10	TCGA-OR-A5LM-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a6b592a8-0b94-419c-9c61-562fe685e97a	b4655f57-0fd5-4e2a-9df1-8fc37b6582d2	.	CXorf22-131	NM_152632	exon2	c.401+1G>C	.	AATTGGGTATGTA	.	32.0	7.0	38.0	0.0	.	Atlas-SNP
