Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Algorithm
PCDH15	65217	hgsc.bcm.edu	37	10	55587197	55587197	+	Silent	SNP	A	A	C	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	PCDH15-193	NM_001142767	exon30	c.T4203G	p.P1401P	TGGCGGAGGCGGC	.	34.0	6.0	14.0	0.0	.	Atlas-SNP
GLRX3	10539	hgsc.bcm.edu	37	10	131969900	131969900	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	GLRX3-22	NM_001199868	exon8	c.G824T	p.G275V	GTACTGGGTATGT	.	43.0	5.0	81.0	0.0	.	Atlas-SNP
MUC5B	727897	hgsc.bcm.edu	37	11	1253980	1253980	+	Missense_Mutation	SNP	A	A	G	rs202127660		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	.	NM_002458	exon17	c.A2045G	p.D682G	TCAGCGACTGGAG	.	104.0	11.0	35.0	0.0	.	Atlas-SNP
OR52M1	119772	hgsc.bcm.edu	37	11	4567166	4567166	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	OR52M1-68	NM_001004137	exon1	c.G746C	p.C249S	ACCTCTGTGCCAT	.	115.0	30.0	153.0	0.0	.	Atlas-SNP
ZNF385A	25946	hgsc.bcm.edu	37	12	54778302	54778302	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	ZNF385A-23	NM_001130968	exon2	c.G57A	p.P19P	CATGATCGGGGGC	.	46.0	7.0	42.0	0.0	.	Atlas-SNP
L3HYPDH	112849	hgsc.bcm.edu	37	14	59950910	59950910	+	Missense_Mutation	SNP	A	A	G	rs17096291	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	.	NM_144581	exon1	c.T125C	p.V42A	CCAGACACCTCCG	.	60.0	20.0	7.0	0.0	A|0.965;G|0.035	Atlas-SNP
STON2	85439	hgsc.bcm.edu	37	14	81737202	81737202	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	STON2-95	NM_001256430	exon7	c.C2425A	p.H809N	AACAGTGTGGGTG	.	52.0	21.0	95.0	0.0	.	Atlas-SNP
KCNK10	54207	hgsc.bcm.edu	37	14	88652129	88652129	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	KCNK10-95	NM_138317	exon7	c.G1382A	p.R461K	TTTTTCCTCTTGG	.	250.0	83.0	338.0	1.0	.	Atlas-SNP
VAT1	10493	hgsc.bcm.edu	37	17	41170156	41170156	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	VAT1-90	NM_006373	exon3	c.C663G	p.A221A	GGCCGAGGCCGTT	.	259.0	14.0	196.0	0.0	.	Atlas-SNP
UBR4	23352	hgsc.bcm.edu	37	1	19518806	19518806	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	UBR4-612	NM_020765	exon11	c.C1270A	p.L424I	GACTGAGGTTCAG	.	79.0	4.0	100.0	0.0	.	Atlas-SNP
NCOA3	8202	hgsc.bcm.edu	37	20	46279863	46279863	+	Silent	SNP	G	G	A	rs141008500	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	NCOA3-229	NM_001174087	exon20	c.G3786A	p.Q1262Q	GCAGCAGCAACAG	.	154.0	8.0	148.0	0.0	G|0.993;A|0.007	Atlas-SNP
MICAL3	57553	hgsc.bcm.edu	37	22	18347738	18347738	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	MICAL3-68	NM_001136004	exon23	c.C2904A	p.P968P	CTGCAGGGGTCCT	.	67.0	4.0	104.0	0.0	.	Atlas-SNP
MN1	4330	hgsc.bcm.edu	37	22	28194933	28194933	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	MN1-993	NM_002430	exon1	c.A1599G	p.Q533Q	CTGCTGTTGCTGC	.	58.0	13.0	14.0	0.0	.	Atlas-SNP
MN1	4330	hgsc.bcm.edu	37	22	28194936	28194936	+	Silent	SNP	C	C	T	rs45597040	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	MN1-993	NM_002430	exon1	c.G1596A	p.Q532Q	CTGTTGCTGCTGC	.	58.0	13.0	15.0	0.0	C|0.963;T|0.037	Atlas-SNP
SNTN	132203	hgsc.bcm.edu	37	3	63649755	63649755	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	SNTN-69	NM_001080537	exon4	c.T428C	p.V143A	GGAATGTAAAAAT	.	130.0	9.0	164.0	0.0	.	Atlas-SNP
CRIPAK	285464	hgsc.bcm.edu	37	4	1388755	1388755	+	Silent	SNP	C	C	G	rs141481663	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	CRIPAK-90	NM_175918	exon1	c.C456G	p.P152P	CGTGCCCATGCGG	.	154.0	50.0	11.0	0.0	C|0.960;G|0.040	Atlas-SNP
KIAA1211	57482	hgsc.bcm.edu	37	4	57180576	57180577	+	In_Frame_Ins	INS	-	-	GGAGCGGAG	rs138358443	by1000genomes	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	KIAA1211-70	NM_020722	exon8	c.908_909insGGAGCGGAG	p.A303delinsAERR	.	.	39.0	17.0	13.0	0.0	.	Atlas-Indel
SLCO6A1	133482	hgsc.bcm.edu	37	5	101816044	101816044	+	Silent	SNP	G	G	A	rs143064096	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	SLCO6A1-96	NM_173488	exon2	c.C453T	p.Y151Y	AATATCGTAACTC	.	141.0	35.0	131.0	0.0	G|0.998;A|0.002	Atlas-SNP
DNAH8	1769	hgsc.bcm.edu	37	6	38813530	38813530	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	DNAH8-615	NM_001206927	exon36	c.G5026T	p.G1676W	GTCTTAGGGTCTT	.	56.0	4.0	68.0	0.0	.	Atlas-SNP
KCNK9	51305	hgsc.bcm.edu	37	8	140715144	140715144	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	KCNK9-93	NM_016601	exon1	c.C92G	p.S31W	TGGTCCGACTCGA	.	280.0	50.0	143.0	0.0	.	Atlas-SNP
SPATA31E1	286234	hgsc.bcm.edu	37	9	90499864	90499864	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	.	NM_178828	exon4	c.C462A	p.H154Q	CTCCCACCTGCCC	.	90.0	17.0	99.0	0.0	.	Atlas-SNP
DCAF8L1	139425	hgsc.bcm.edu	37	X	27999220	27999220	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	DCAF8L1-112	NM_001017930	exon1	c.G232C	p.D78H	CGACGTCTTCACT	.	275.0	49.0	244.0	0.0	.	Atlas-SNP
