Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Algorithm
FAM208B	54906	hgsc.bcm.edu	37	10	5773063	5773063	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	.	NM_017782	exon11	c.C1101T	p.C367C	CTTGTGCCGCCCC	.	42.0	4.0	30.0	0.0	.	Atlas-SNP
TAF3	83860	hgsc.bcm.edu	37	10	8006163	8006163	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	TAF3-69	NM_031923	exon3	c.A690G	p.P230P	TTCTCCAGTCCAT	.	222.0	44.0	183.0	0.0	.	Atlas-SNP
ARHGAP21	57584	hgsc.bcm.edu	37	10	24909959	24909959	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	ARHGAP21-235	NM_020824	exon9	c.A865G	p.N289D	GGTTGTTTCTATT	.	429.0	93.0	285.0	0.0	.	Atlas-SNP
ZEB1	6935	hgsc.bcm.edu	37	10	31810238	31810238	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	ZEB1-518	NM_001174093	exon6	c.A1915C	p.N639H	AAGAACAATGATC	.	145.0	45.0	87.0	0.0	.	Atlas-SNP
PNLIP	5406	hgsc.bcm.edu	37	10	118307963	118307963	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	PNLIP-92	NM_000936	exon4	c.G293A	p.G98E	ACAAGGGAGAAGA	.	131.0	31.0	117.0	0.0	.	Atlas-SNP
BTBD16	118663	hgsc.bcm.edu	37	10	124089066	124089066	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	BTBD16-91	NM_144587	exon11	c.G983A	p.R328H	GCTTGCGTCTGCA	.	71.0	28.0	58.0	0.0	.	Atlas-SNP
EBF3	253738	hgsc.bcm.edu	37	10	131639127	131639127	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	EBF3-91	NM_001005463	exon14	c.C1515T	p.S505S	GTTAGCGGAGGAG	.	64.0	15.0	89.0	0.0	.	Atlas-SNP
LRRC4C	57689	hgsc.bcm.edu	37	11	40136210	40136210	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	LRRC4C-521	NM_020929	exon5	c.G1633C	p.V545L	AAATGACCAGCAT	.	143.0	11.0	169.0	0.0	.	Atlas-SNP
PPME1	51400	hgsc.bcm.edu	37	11	73957234	73957234	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	.	NM_016147	exon10	c.A948G	p.K316K	TCCTAAATTGCTG	.	66.0	63.0	70.0	0.0	.	Atlas-SNP
CD163L1	283316	hgsc.bcm.edu	37	12	7531782	7531782	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	CD163L1-100	NM_174941	exon9	c.G2163T	p.M721I	AATGTTCATTCCC	.	141.0	28.0	110.0	0.0	.	Atlas-SNP
EPS8	2059	hgsc.bcm.edu	37	12	15823815	15823815	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	EPS8-94	NM_004447	exon4	c.C179T	p.S60L	ATATCTGACACAC	.	120.0	32.0	112.0	0.0	.	Atlas-SNP
KRT72	140807	hgsc.bcm.edu	37	12	52980754	52980754	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	KRT72-96	NM_001146226	exon7	c.G1195A	p.E399K	GATATTCGCCAGA	.	242.0	50.0	185.0	0.0	.	Atlas-SNP
TMEM132C	92293	hgsc.bcm.edu	37	12	129100821	129100821	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	TMEM132C-68	NM_001136103	exon4	c.G1246A	p.A416T	GACATCGCCGTGT	.	264.0	77.0	212.0	0.0	.	Atlas-SNP
PGAM5	192111	hgsc.bcm.edu	37	12	133294107	133294107	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	PGAM5-90	NM_001170544	exon3	c.G453T	p.T151T	TATGACGCGCGCC	.	77.0	4.0	107.0	0.0	.	Atlas-SNP
CEP128	145508	hgsc.bcm.edu	37	14	81209477	81209477	+	Silent	SNP	G	G	C	rs201355718		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	CEP128-91	NM_152446	exon18	c.C2748G	p.L916L	TTGAAAGAGACAC	.	102.0	20.0	40.0	0.0	G|0.999;C|0.001	Atlas-SNP
PTPN9	5780	hgsc.bcm.edu	37	15	75782617	75782617	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	PTPN9-226	NM_002833	exon8	c.C994G	p.R332G	CATAACGGTTTTT	.	110.0	54.0	121.0	0.0	.	Atlas-SNP
BFAR	51283	hgsc.bcm.edu	37	16	14761544	14761544	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	BFAR-92	NM_016561	exon8	c.C1213A	p.L405I	CAGGGGCTTTTTG	.	92.0	41.0	85.0	0.0	.	Atlas-SNP
CTRL	1506	hgsc.bcm.edu	37	16	67963838	67963838	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	CTRL-90	NM_001907	exon7	c.G794C	p.X265S	TGAGCTCAGTTGT	.	82.0	19.0	54.0	0.0	.	Atlas-SNP
GFAP	2670	hgsc.bcm.edu	37	17	42989105	42989105	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	GFAP-516	NM_001131019	exon5	c.G841T	p.E281X	TGGCTTCGTGCTT	.	86.0	70.0	106.0	0.0	.	Atlas-SNP
PRKAR1A	5573	hgsc.bcm.edu	37	17	66521052	66521052	+	Splice_Site	SNP	G	G	A	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	PRKAR1A-1141	NM_212471	exon6	c.503-1G>A	.	CTTTTAGGTGATG	.	34.0	18.0	67.0	0.0	.	Atlas-SNP
FASN	2194	hgsc.bcm.edu	37	17	80039129	80039129	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	FASN-90	NM_004104	exon38	c.A6506T	p.E2169V	TTGAGCTCACGCT	.	208.0	14.0	85.0	0.0	.	Atlas-SNP
FASN	2194	hgsc.bcm.edu	37	17	80042498	80042498	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	FASN-90	NM_004104	exon27	c.T4659G	p.H1553Q	CTGGGCATGGCGC	.	195.0	26.0	112.0	0.0	.	Atlas-SNP
C19orf24	55009	hgsc.bcm.edu	37	19	1275820	1275820	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	C19orf24-90	NM_017914	exon1	c.G272T	p.R91L	TGATCCGGGCGTT	.	59.0	4.0	7.0	0.0	.	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	37	19	9066010	9066010	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	MUC16-566	NM_024690	exon3	c.G21436C	p.E7146Q	CAAGTTCTGGGCT	.	489.0	216.0	326.0	0.0	.	Atlas-SNP
LDLR	3949	hgsc.bcm.edu	37	19	11234004	11234004	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	LDLR-94	NM_001195802	exon14	c.G1932C	p.V644V	GATAGTGACAATG	.	134.0	27.0	72.0	0.0	.	Atlas-SNP
RNASEH2A	10535	hgsc.bcm.edu	37	19	12918306	12918306	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	RNASEH2A-524	NM_006397	exon4	c.G397T	p.V133L	CAGGGCGTGAACG	.	296.0	134.0	188.0	0.0	.	Atlas-SNP
GIPR	2696	hgsc.bcm.edu	37	19	46176189	46176189	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	GIPR-523	NM_000164	exon5	c.C361T	p.P121S	GAGAACCCAGAGA	.	151.0	30.0	115.0	0.0	.	Atlas-SNP
SLC1A5	6510	hgsc.bcm.edu	37	19	47278856	47278856	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	SLC1A5-90	NM_001145145	exon7	c.C931G	p.P311A	CAGTGGGGACTGG	.	112.0	17.0	101.0	0.0	.	Atlas-SNP
HRC	3270	hgsc.bcm.edu	37	19	49657889	49657889	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	HRC-91	NM_002152	exon1	c.A606G	p.E202E	CTCCTCTTCCTCC	.	110.0	6.0	73.0	0.0	.	Atlas-SNP
HRC	3270	hgsc.bcm.edu	37	19	49657916	49657916	+	Silent	SNP	T	T	C	rs7409255		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	HRC-91	NM_002152	exon1	c.A579G	p.E193E	CTCCTCTTCTCCT	.	100.0	6.0	82.0	0.0	.	Atlas-SNP
NLRP12	91662	hgsc.bcm.edu	37	19	54313435	54313435	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	NLRP12-211	NM_144687	exon3	c.A1478T	p.N493I	AGGAAGGCAGAGA	.	257.0	41.0	157.0	0.0	.	Atlas-SNP
NLRP9	338321	hgsc.bcm.edu	37	19	56226564	56226564	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	NLRP9-294	NM_176820	exon6	c.C2358G	p.V786V	ACAGGAGACAGAG	.	170.0	30.0	130.0	0.0	.	Atlas-SNP
ZNF135	7694	hgsc.bcm.edu	37	19	58579299	58579299	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	ZNF135-91	NM_003436	exon5	c.C1483A	p.Q495K	CTCACCCAACACC	.	204.0	44.0	128.0	0.0	.	Atlas-SNP
TTF2	8458	hgsc.bcm.edu	37	1	117618146	117618146	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	TTF2-91	NM_003594	exon5	c.C940G	p.Q314E	CATTTCCAAGAGC	.	101.0	48.0	114.0	0.0	.	Atlas-SNP
NBPF7	343505	hgsc.bcm.edu	37	1	120378701	120378701	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	NBPF7-24	NM_001047980	exon7	c.G1045C	p.E349Q	TCTGTTCAACTAG	.	129.0	56.0	173.0	0.0	.	Atlas-SNP
NME7	29922	hgsc.bcm.edu	37	1	169292366	169292366	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	NME7-514	NM_197972	exon3	c.T159C	p.S53S	TTTCCTACTGCCC	.	32.0	13.0	50.0	0.0	.	Atlas-SNP
ELK4	2005	hgsc.bcm.edu	37	1	205592890	205592890	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	ELK4-658	NM_001973	exon2	c.G121T	p.V41L	GAGCCACCTCTTC	.	114.0	50.0	179.0	0.0	.	Atlas-SNP
TXNIP	10628	hgsc.bcm.edu	37	1	145441200	145441202	+	In_Frame_Del	DEL	CAA	CAA	-	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	CAA	CAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	TXNIP-92	NM_006472	exon8	c.1157_1159del	p.386_387del	.	.	105.0	25.0	96.0	0.0	.	Atlas-Indel
PAK7	57144	hgsc.bcm.edu	37	20	9538346	9538346	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	PAK7-1434	NM_177990	exon7	c.C1652A	p.S551X	AGAACTGACAGGC	.	73.0	29.0	82.0	0.0	.	Atlas-SNP
PTPN4	5775	hgsc.bcm.edu	37	2	120640081	120640081	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	PTPN4-228	NM_002830	exon8	c.G469A	p.E157K	TTAGCTGAACTTG	.	116.0	60.0	113.0	0.0	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	37	2	179581920	179581920	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	TTN-636	NM_001267550	exon88	c.C25541T	p.T8514I	AGAACTGTCAGAG	.	67.0	34.0	114.0	0.0	.	Atlas-SNP
UNC80	285175	hgsc.bcm.edu	37	2	210705361	210705361	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	UNC80-90	NM_182587	exon20	c.C3337A	p.Q1113K	ATCAGGCAAAGCT	.	94.0	8.0	127.0	0.0	.	Atlas-SNP
RHBDD1	84236	hgsc.bcm.edu	37	2	227729481	227729481	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	RHBDD1-91	NM_001167608	exon4	c.C72T	p.I24I	TGGGATCAACAAT	.	102.0	42.0	163.0	0.0	.	Atlas-SNP
ILKAP	80895	hgsc.bcm.edu	37	2	239079640	239079640	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	ILKAP-118	NM_030768	exon11	c.C982A	p.L328I	TGAAGAGCCCATC	.	141.0	67.0	174.0	0.0	.	Atlas-SNP
CSN1S1	1446	hgsc.bcm.edu	37	4	70802862	70802862	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	.	NM_001025104	exon8	c.G216T	p.Q72H	TACTCAGGTGAGA	.	239.0	43.0	128.0	0.0	.	Atlas-SNP
METTL14	57721	hgsc.bcm.edu	37	4	119626935	119626935	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	METTL14-90	NM_020961	exon10	c.G1025A	p.R342K	GTAGAAGACGCCT	.	87.0	21.0	56.0	0.0	.	Atlas-SNP
TRIM60	166655	hgsc.bcm.edu	37	4	165962195	165962195	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	TRIM60-226	NM_001258025	exon4	c.G971A	p.R324Q	AAAAACGAAACAT	.	154.0	33.0	118.0	0.0	.	Atlas-SNP
MAST4	375449	hgsc.bcm.edu	37	5	66462103	66462103	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	MAST4-647	NM_015183	exon28	c.G6529A	p.D2177N	AACACCGACAGAA	.	135.0	33.0	96.0	0.0	.	Atlas-SNP
CENPH	64946	hgsc.bcm.edu	37	5	68485476	68485476	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	CENPH-153	NM_022909	exon1	c.C15G	p.P5P	GCAGCCCCAGATG	.	51.0	12.0	32.0	0.0	.	Atlas-SNP
CAMK4	814	hgsc.bcm.edu	37	5	110819981	110819981	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	CAMK4-386	NM_001744	exon11	c.C1239A	p.A413A	AGAGGCCCCCAAA	.	127.0	39.0	108.0	0.0	.	Atlas-SNP
AQPEP	0	hgsc.bcm.edu	37	5	115336915	115336915	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	FLJ90650,upper_arm,malignant_melanoma,-1	.	NM_173800	exon10	c.A1799G	p.N600S	TTAAAAATCGGAC	.	376.0	100.0	220.0	0.0	.	Atlas-SNP
NIPAL4	348938	hgsc.bcm.edu	37	5	156899852	156899852	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	NIPAL4-68	NM_001172292	exon5	c.G1228A	p.A410T	TCTCCCGCCCCGG	.	95.0	46.0	45.0	0.0	.	Atlas-SNP
ADAMTS2	9509	hgsc.bcm.edu	37	5	178608155	178608155	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	ADAMTS2-228	NM_021599	exon5	c.T893C	p.V298A	TCATTGACCTGAA	.	240.0	69.0	140.0	0.0	.	Atlas-SNP
CD83	9308	hgsc.bcm.edu	37	6	14131769	14131769	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	CD83-90	NM_004233	exon3	c.G172C	p.E58Q	GGTGAAGAGAGGA	.	127.0	46.0	132.0	0.0	.	Atlas-SNP
HIST1H1E	3008	hgsc.bcm.edu	37	6	26156922	26156922	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	HIST1H1E-154	NM_005321	exon1	c.T304A	p.S102T	GGCGCGTCGGGTT	.	124.0	64.0	160.0	0.0	.	Atlas-SNP
USP42	84132	hgsc.bcm.edu	37	7	6175530	6175530	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	USP42-659	NM_032172	exon4	c.C501G	p.L167L	GGCACTCAGTAAT	.	195.0	34.0	143.0	0.0	.	Atlas-SNP
MCM7	4176	hgsc.bcm.edu	37	7	99697290	99697290	+	Silent	SNP	A	A	T	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	MCM7-651	NM_005916	exon3	c.T198A	p.I66I	CTCACAAATTGAG	.	38.0	6.0	55.0	0.0	.	Atlas-SNP
TAS2R5	54429	hgsc.bcm.edu	37	7	141490447	141490447	+	Missense_Mutation	SNP	G	G	T	rs142196311	alternate_allele	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	TAS2R5-90	NM_018980	exon1	c.G286T	p.A96S	TGGTTTGCCACCT	.	118.0	31.0	138.0	0.0	G|1.000;A|0.000	Atlas-SNP
NOS3	4846	hgsc.bcm.edu	37	7	150696313	150696313	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	NOS3-1011	NM_000603	exon9	c.A992G	p.Y331C	GCTGGTACGCCCT	.	65.0	36.0	57.0	0.0	.	Atlas-SNP
NEFL	4747	hgsc.bcm.edu	37	8	24811264	24811264	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	NEFL-24	NM_006158	exon3	c.G1215A	p.V405V	GCTTCCCACGCTG	.	65.0	52.0	86.0	0.0	.	Atlas-SNP
PREX2	80243	hgsc.bcm.edu	37	8	69020559	69020559	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	PREX2-390	NM_024870	exon24	c.G2931A	p.S977S	ATCTTCGGAGCAA	.	63.0	22.0	74.0	0.0	.	Atlas-SNP
CXorf21	80231	hgsc.bcm.edu	37	X	30577888	30577888	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	CXorf21-131	NM_025159	exon3	c.G585A	p.E195E	GCTTTTCTCTTTG	.	147.0	39.0	87.0	0.0	.	Atlas-SNP
CXorf21	80231	hgsc.bcm.edu	37	X	30577890	30577890	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	CXorf21-131	NM_025159	exon3	c.G583A	p.E195K	TTTTCTCTTTGAT	.	146.0	36.0	87.0	0.0	.	Atlas-SNP
HS6ST2	90161	hgsc.bcm.edu	37	X	132090979	132090979	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	HS6ST2-130	NM_001077188	exon3	c.C804A	p.H268Q	CGGCCGGTGGCAA	.	519.0	111.0	256.0	0.0	.	Atlas-SNP
L1CAM	3897	hgsc.bcm.edu	37	X	153133282	153133282	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	L1CAM-138	NM_001143963	exon14	c.G1897T	p.A633S	CTTCTGCAGGACT	.	177.0	34.0	125.0	0.0	.	Atlas-SNP
KLHL15	80311	hgsc.bcm.edu	37	X	24006761	24006763	+	In_Frame_Del	DEL	ATC	ATC	-	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	ATC	ATC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	KLHL15-131	NM_030624	exon4	c.1091_1093del	p.364_365del	.	.	227.0	65.0	164.0	0.0	.	Pindel
