Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Algorithm
MKI67	4288	hgsc.bcm.edu	37	10	129913821	129913821	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	MKI67-519	NM_002417	exon7	c.C851A	p.T284N	AGTTGGGTCTCCC	.	69.0	40.0	88.0	0.0	.	Atlas-SNP
MUC5B	727897	hgsc.bcm.edu	37	11	1253976	1253976	+	Missense_Mutation	SNP	A	A	G	rs76956995		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	.	NM_002458	exon17	c.A2041G	p.S681G	CAGCTCAGCGACT	.	100.0	7.0	31.0	0.0	.	Atlas-SNP
MUC5B	727897	hgsc.bcm.edu	37	11	1253980	1253980	+	Missense_Mutation	SNP	A	A	G	rs202127660		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	.	NM_002458	exon17	c.A2045G	p.D682G	TCAGCGACTGGAG	.	97.0	6.0	29.0	0.0	.	Atlas-SNP
ANO5	203859	hgsc.bcm.edu	37	11	22279254	22279254	+	Missense_Mutation	SNP	C	C	T	rs148698633		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	ANO5-515	NM_001142649	exon14	c.C1358T	p.T453M	TATACACGCGTAT	.	87.0	42.0	107.0	0.0	C|1.000;T|0.000	Atlas-SNP
TNFRSF1A	7132	hgsc.bcm.edu	37	12	6439136	6439136	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	TNFRSF1A-659	NM_001065	exon9	c.C865G	p.P289A	AACTGGGCACGGG	.	38.0	14.0	30.0	0.0	.	Atlas-SNP
LRIG3	121227	hgsc.bcm.edu	37	12	59268001	59268001	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	LRIG3-229	NM_153377	exon18	c.G2951A	p.S984N	CTGAAGCTCCGTT	.	227.0	76.0	181.0	0.0	.	Atlas-SNP
LAG3	3902	hgsc.bcm.edu	37	12	6887493	6887494	+	In_Frame_Ins	INS	-	-	CCGGAG	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	LAG3-90	NM_002286	exon8	c.1515_1516insCCGGAG	p.E505delinsEPE	.	.	88.0	22.0	37.0	0.0	.	Atlas-Indel
PPFIA3	8541	hgsc.bcm.edu	37	19	49645325	49645325	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	PPFIA3-226	NM_003660	exon20	c.C2497G	p.L833V	CAGGGCCTACCTT	.	97.0	6.0	74.0	0.0	.	Atlas-SNP
RGL1	23179	hgsc.bcm.edu	37	1	183867009	183867009	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	RGL1-725	NM_015149	exon11	c.G1313T	p.R438L	AGAGGCGGCTGCA	.	119.0	60.0	142.0	0.0	.	Atlas-SNP
CTH	1491	hgsc.bcm.edu	37	1	70904780	70904784	+	Splice_Site	DEL	ATAGC	ATAGC	-	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	ATAGC	ATAGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	CTH-91	.	.	.	.	.	.	81.0	33.0	129.0	0.0	.	Atlas-Indel
OTOR	56914	hgsc.bcm.edu	37	20	16729548	16729548	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	OTOR-206	NM_020157	exon2	c.A152G	p.N51S	ATTATAATGCCCC	.	48.0	4.0	37.0	0.0	.	Atlas-SNP
C2orf54	79919	hgsc.bcm.edu	37	2	241835134	241835134	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	C2orf54-90	NM_001085437	exon1	c.T281C	p.I94T	TCCTCAATCAGTA	.	185.0	118.0	196.0	0.0	.	Atlas-SNP
RAPGEF5	9771	hgsc.bcm.edu	37	7	22348060	22348060	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	RAPGEF5-206	NM_012294	exon5	c.A119G	p.Y40C	TACAAGTAGCTAC	.	117.0	7.0	62.0	0.0	.	Atlas-SNP
COBL	23242	hgsc.bcm.edu	37	7	51111334	51111334	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	COBL-95	NM_015198	exon8	c.G1152T	p.V384V	TGACAGCACCTGC	.	104.0	43.0	81.0	0.0	.	Atlas-SNP
POM121L12	285877	hgsc.bcm.edu	37	7	53103693	53103693	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	.	NM_182595	exon1	c.G329T	p.R110L	TGGGGCGAGACCT	.	82.0	8.0	21.0	0.0	.	Atlas-SNP
PALM2-AKAP2	445815	hgsc.bcm.edu	37	9	112899504	112899504	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	PALM2-AKAP2-475	NM_147150	exon8	c.A1680T	p.Q560H	CAAACAATTTCAG	.	70.0	13.0	96.0	0.0	.	Atlas-SNP
COL5A1	1289	hgsc.bcm.edu	37	9	137676893	137676893	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	COL5A1-524	NM_000093	exon30	c.G2543A	p.R848H	AGGGTCGCGGAGG	.	56.0	7.0	59.0	0.0	.	Atlas-SNP
RBBP7	5931	hgsc.bcm.edu	37	X	16871808	16871808	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	RBBP7-227	NM_001198719	exon6	c.T887C	p.M296T	TACATCATAAGTT	.	117.0	39.0	87.0	0.0	.	Atlas-SNP
