Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Algorithm
MUC5B	727897	hgsc.bcm.edu	37	11	1253976	1253976	+	Missense_Mutation	SNP	A	A	G	rs76956995		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	.	NM_002458	exon17	c.A2041G	p.S681G	CAGCTCAGCGACT	.	117.0	15.0	8.0	0.0	.	Atlas-SNP
MUC5B	727897	hgsc.bcm.edu	37	11	1253980	1253980	+	Missense_Mutation	SNP	A	A	G	rs202127660		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	.	NM_002458	exon17	c.A2045G	p.D682G	TCAGCGACTGGAG	.	113.0	13.0	7.0	0.0	.	Atlas-SNP
KRTAP5-4	387267	hgsc.bcm.edu	37	11	1643216	1643216	+	Silent	SNP	C	C	T	rs184923323	by1000genomes	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	.	NM_001012709	exon1	c.G108A	p.G36G	ACAGCCCCCACAG	.	150.0	8.0	19.0	0.0	C|0.983;T|0.017	Atlas-SNP
ARHGAP32	9743	hgsc.bcm.edu	37	11	128857997	128857997	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	ARHGAP32-231	NM_014715	exon3	c.A130G	p.T44A	ATGCTGTGCAGCT	.	30.0	8.0	35.0	0.0	.	Atlas-SNP
TAS2R43	259289	hgsc.bcm.edu	37	12	11244814	11244814	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	TAS2R43-1	NM_176884	exon1	c.A15G	p.L5L	GATGGGTAGAAAA	.	181.0	10.0	124.0	0.0	.	Atlas-SNP
EP400	57634	hgsc.bcm.edu	37	12	132547099	132547099	+	Silent	SNP	G	G	A	rs145603866	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	EP400-520	NM_015409	exon47	c.G8187A	p.Q2729Q	ACAGCAGCAGCAG	.	235.0	24.0	84.0	0.0	G|0.997;A|0.003	Atlas-SNP
SALL1	6299	hgsc.bcm.edu	37	16	51175655	51175655	+	Missense_Mutation	SNP	C	C	T	rs199760974		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	SALL1-98	NM_002968	exon2	c.G478A	p.G160S	CGCCGCCGCTGCT	.	150.0	17.0	46.0	0.0	.	Atlas-SNP
CDH8	1006	hgsc.bcm.edu	37	16	61851433	61851433	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	CDH8-161	NM_001796	exon7	c.G1227C	p.V409V	CCCAATCACGGAG	.	242.0	91.0	153.0	0.0	.	Atlas-SNP
ZNF534	147658	hgsc.bcm.edu	37	19	52941934	52941934	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	ZNF534-68	NM_001143939	exon4	c.G1260A	p.G420G	TGGGGGGAGGCGT	.	149.0	36.0	98.0	0.0	.	Atlas-SNP
SLC27A5	10998	hgsc.bcm.edu	37	19	59010241	59010241	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	SLC27A5-90	NM_012254	exon9	c.C1807G	p.P603A	GGCCGGGGGCTAG	.	182.0	76.0	90.0	0.0	.	Atlas-SNP
HIVEP3	59269	hgsc.bcm.edu	37	1	42047867	42047867	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	HIVEP3-157	NM_024503	exon4	c.G2602T	p.D868Y	CTGTGTCCGGCCG	.	69.0	10.0	68.0	0.0	.	Atlas-SNP
TARBP1	6894	hgsc.bcm.edu	37	1	234601455	234601456	+	Frame_Shift_Del	DEL	CT	CT	-	rs138363068	by1000genomes	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	TARBP1-93	NM_005646	exon5	c.1249_1249del	p.417_417del	.	.	57.0	10.0	42.0	0.0	.	Atlas-Indel
SDCBP2	27111	hgsc.bcm.edu	37	20	1293253	1293253	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	SDCBP2-154	NM_080489	exon6	c.A538G	p.I180V	CGACAATCTTATC	.	241.0	75.0	191.0	0.0	.	Atlas-SNP
CDKL3	51265	hgsc.bcm.edu	37	5	133640095	133640095	+	Splice_Site	SNP	C	C	A	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	CDKL3-389	NM_001113575	exon12	c.1621+1G>T	.	TGTGTACCTTCCA	.	126.0	40.0	68.0	0.0	.	Atlas-SNP
EPPK1	83481	hgsc.bcm.edu	37	8	144940290	144940290	+	Missense_Mutation	SNP	C	C	G	rs201976887		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	EPPK1-25	NM_031308	exon1	c.G7132C	p.D2378H	TGGGGTCGGCCAG	.	368.0	28.0	77.0	0.0	.	Atlas-SNP
