Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Algorithm
CUBN	8029	hgsc.bcm.edu	37	10	17087956	17087956	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	CUBN-166	NM_001081	exon24	c.C3467A	p.A1156D	CAGTAAGCTGAGA	.	94.0	5.0	95.0	0.0	.	Atlas-SNP
ZW10	9183	hgsc.bcm.edu	37	11	113631587	113631587	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	ZW10-228	NM_004724	exon3	c.G294T	p.Q98H	TTCCAACTGCTGC	.	89.0	81.0	153.0	0.0	.	Atlas-SNP
KRTAP5-5	439915	hgsc.bcm.edu	37	11	1651199	1651200	+	In_Frame_Ins	INS	-	-	GGCTGTGGCTCC	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	KRTAP5-5-23	NM_001001480	exon1	c.129_130insGGCTGTGGCTCC	p.G43delinsGGCGS	.	.	63.0	24.0	31.0	0.0	.	Atlas-Indel
PGAP2	27315	hgsc.bcm.edu	37	11	3846588	3846589	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	PGAP2-90	NM_001256236	exon8	c.1019_1020insT	p.T340fs	.	.	154.0	143.0	241.0	0.0	.	Atlas-Indel
MEN1	4221	hgsc.bcm.edu	37	11	64577330	64577333	+	Frame_Shift_Del	DEL	AGAC	AGAC	-	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	AGAC	AGAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	MEN1,NS,carcinoma,0	MEN1-3017	NM_130801	exon2	c.250_253del	p.84_85del	.	.	81.0	67.0	164.0	0.0	.	Atlas-Indel
ATM	472	hgsc.bcm.edu	37	11	108142086	108142098	+	Frame_Shift_Del	DEL	CACAAGGGATGCT	CACAAGGGATGCT	-	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	CACAAGGGATGCT	CACAAGGGATGCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	ATM-3419	NM_000051	exon20	c.3029_3041del	p.1010_1014del	.	.	34.0	25.0	155.0	0.0	.	Atlas-Indel
LRRIQ1	84125	hgsc.bcm.edu	37	12	85449577	85449577	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	LRRIQ1-95	NM_001079910	exon8	c.C1006T	p.R336X	GAAAATCGAAAAA	.	146.0	75.0	102.0	0.0	.	Atlas-SNP
SCAF11	9169	hgsc.bcm.edu	37	12	46328052	46328053	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	SCAF11-93	NM_004719	exon8	c.539_540insT	p.W180fs	.	.	96.0	38.0	92.0	0.0	.	Atlas-Indel
THAP11	57215	hgsc.bcm.edu	37	16	67876796	67876796	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	THAP11-90	NM_020457	exon1	c.A339G	p.Q113Q	GCAGCAACAGCAG	.	30.0	5.0	6.0	0.0	.	Atlas-SNP
THAP11	57215	hgsc.bcm.edu	37	16	67876805	67876805	+	Silent	SNP	A	A	G	rs28434205	bycluster;byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	THAP11-90	NM_020457	exon1	c.A348G	p.Q116Q	GCAGCAACAGCAG	.	30.0	12.0	16.0	0.0	A|0.991;G|0.009	Atlas-SNP
THAP11	57215	hgsc.bcm.edu	37	16	67876814	67876814	+	Silent	SNP	G	G	A	rs143185886	byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	THAP11-90	NM_020457	exon1	c.G357A	p.Q119Q	GCAGCAGCAGCAG	.	27.0	6.0	18.0	0.0	G|0.997;A|0.003	Atlas-SNP
KRTAP4-5	85289	hgsc.bcm.edu	37	17	39305774	39305774	+	Missense_Mutation	SNP	C	C	G	rs137947981		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	KRTAP4-5-90	NM_033188	exon1	c.G246C	p.Q82H	GGTGGTCTGGCAG	.	132.0	21.0	67.0	0.0	.	Atlas-SNP
KRTAP4-5	85289	hgsc.bcm.edu	37	17	39305800	39305800	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	KRTAP4-5-90	NM_033188	exon1	c.A220T	p.S74C	AGCAGCTGGATTC	.	130.0	14.0	66.0	0.0	.	Atlas-SNP
TTC25	83538	hgsc.bcm.edu	37	17	40093013	40093013	+	Splice_Site	SNP	A	A	G	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	TTC25-23	NM_031421	exon5	c.460-2A>G	.	TTTCTCAGAATAT	.	85.0	38.0	79.0	0.0	.	Atlas-SNP
SLC25A19	60386	hgsc.bcm.edu	37	17	73282384	73282384	+	Splice_Site	SNP	C	C	T	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	SLC25A19-91	NM_021734	exon5	c.288+1G>A	.	CACCTACTTGGAC	.	113.0	19.0	93.0	0.0	.	Atlas-SNP
NLRP11	204801	hgsc.bcm.edu	37	19	56296996	56296996	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	NLRP11-169	NM_145007	exon12	c.C3097A	p.L1033I	ATCAAAGGGGTTG	.	369.0	170.0	318.0	0.0	.	Atlas-SNP
OR2C3	81472	hgsc.bcm.edu	37	1	247694861	247694861	+	Missense_Mutation	SNP	G	G	A	rs147306837	alternate_allele	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	OR2C3-70	NM_198074	exon2	c.C953T	p.A318V	ATTTGCGCCAGCT	.	93.0	86.0	152.0	1.0	G|1.000;T|0.000	Atlas-SNP
OGFR	11054	hgsc.bcm.edu	37	20	61444569	61444569	+	Silent	SNP	A	A	G	rs3204348	byfrequency;by1000genomes	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	OGFR-68	NM_007346	exon7	c.A1602G	p.P534P	CGAGCCAGCCGAG	.	44.0	7.0	29.0	0.0	A|0.979;G|0.021	Atlas-SNP
DPP10	57628	hgsc.bcm.edu	37	2	116497402	116497402	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	DPP10-142	NM_001178036	exon10	c.C635A	p.P212H	TGGTACCCACCAT	.	235.0	20.0	419.0	0.0	.	Atlas-SNP
DDX18	8886	hgsc.bcm.edu	37	2	118582643	118582643	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	DDX18-290	NM_006773	exon9	c.T1334C	p.L445P	AGTTGCTGAACTA	.	147.0	57.0	202.0	0.0	.	Atlas-SNP
WDR6	11180	hgsc.bcm.edu	37	3	49050657	49050657	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	WDR6-90	NM_018031	exon2	c.C1780A	p.P594T	ACCCTGCCCTCTC	.	89.0	57.0	132.0	0.0	.	Atlas-SNP
RNF139	11236	hgsc.bcm.edu	37	8	125498340	125498340	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	RNF139-226	NM_007218	exon2	c.C450G	p.I150M	TTCCATCTATTCA	.	106.0	6.0	249.0	0.0	.	Atlas-SNP
TSNARE1	203062	hgsc.bcm.edu	37	8	143396409	143396409	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	TSNARE1-90	NM_145003	exon8	c.A1029C	p.K343N	CTGGGTTTTCAGC	.	150.0	134.0	294.0	2.0	.	Atlas-SNP
MORN5	254956	hgsc.bcm.edu	37	9	124936830	124936830	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	MORN5-90	NM_198469	exon4	c.C363G	p.Y121X	CTATTACGATTGT	.	146.0	31.0	112.0	0.0	.	Atlas-SNP
SAPCD2	89958	hgsc.bcm.edu	37	9	139959388	139959388	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	.	NM_178448	exon5	c.C983T	p.T328M	GTGGACGTCAGGG	.	92.0	42.0	39.0	0.0	.	Atlas-SNP
POLA1	5422	hgsc.bcm.edu	37	X	24844592	24844592	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	POLA1-229	NM_016937	exon32	c.C3592T	p.L1198L	GAGCAGCTGCAGA	.	88.0	79.0	96.0	0.0	.	Atlas-SNP
