Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Algorithm
PCDH15	65217	hgsc.bcm.edu	37	10	55943228	55943228	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	PCDH15-193	NM_001142767	exon12	c.G1455A	p.M485I	AGGTCTCATGTCT	.	185.0	73.0	127.0	0.0	.	Atlas-SNP
C2CD2L	9854	hgsc.bcm.edu	37	11	118986791	118986791	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	C2CD2L-68	NM_014807	exon14	c.G1949T	p.R650L	TCTTCCGCCGGAG	.	53.0	4.0	81.0	0.0	.	Atlas-SNP
KRTAP5-5	439915	hgsc.bcm.edu	37	11	1651199	1651200	+	In_Frame_Ins	INS	-	-	GGCTGTGGCTCC	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	KRTAP5-5-23	NM_001001480	exon1	c.129_130insGGCTGTGGCTCC	p.G43delinsGGCGS	.	.	67.0	27.0	33.0	0.0	.	Atlas-Indel
KIAA1551	55196	hgsc.bcm.edu	37	12	32136338	32136338	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	.	NM_018169	exon4	c.G2449T	p.D817Y	AAAGTTGATGTTA	.	98.0	5.0	85.0	0.0	.	Atlas-SNP
CPSF6	11052	hgsc.bcm.edu	37	12	69646896	69646896	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	CPSF6-226	NM_007007	exon3	c.335delT	p.I112fs	.	.	159.0	77.0	161.0	0.0	.	Atlas-Indel
CPSF6	11052	hgsc.bcm.edu	37	12	69646903	69646903	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	CPSF6-226	NM_007007	exon3	c.342delT	p.F114fs	.	.	157.0	33.0	158.0	0.0	.	Pindel
PCCA	5095	hgsc.bcm.edu	37	13	100925450	100925450	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	PCCA-227	NM_001178004	exon12	c.C915A	p.S305R	ATGTAGCATTTTT	.	39.0	20.0	61.0	0.0	.	Atlas-SNP
NOVA1	4857	hgsc.bcm.edu	37	14	26917292	26917292	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	NOVA1-229	NM_002515	exon5	c.G1397A	p.G466D	CTTGTGCCAGGTA	.	274.0	116.0	234.0	0.0	.	Atlas-SNP
SERPINA3	12	hgsc.bcm.edu	37	14	95085645	95085645	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	SERPINA3-653	NM_001085	exon3	c.T757C	p.Y253H	ATACCTTACTTCC	.	351.0	29.0	258.0	0.0	.	Atlas-SNP
FAM219B	57184	hgsc.bcm.edu	37	15	75195092	75195092	+	Silent	SNP	C	C	T	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	.	NM_020447	exon5	c.G465A	p.Q155Q	CCCATCCTGAAGC	.	107.0	7.0	151.0	0.0	.	Atlas-SNP
OR4F15	390649	hgsc.bcm.edu	37	15	102359139	102359139	+	Missense_Mutation	SNP	C	C	A	rs149793188	byfrequency;alternate_allele	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	OR4F15-68	NM_001001674	exon1	c.C750A	p.F250L	CTTGTTCTTTGGG	.	82.0	6.0	139.0	0.0	C|1.000;T|0.000	Atlas-SNP
C19orf71	100128569	hgsc.bcm.edu	37	19	3543552	3543552	+	Splice_Site	SNP	G	G	C	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	.	NM_001135580	exon3	c.323-1G>C	.	ACCGCAGCCTACA	.	74.0	21.0	18.0	0.0	.	Atlas-SNP
MYO9B	4650	hgsc.bcm.edu	37	19	17311225	17311225	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	MYO9B-67	NM_001130065	exon25	c.G4362C	p.K1454N	GAAGAAGGGCCTG	.	235.0	64.0	122.0	0.0	.	Atlas-SNP
ZNF714	148206	hgsc.bcm.edu	37	19	21300738	21300738	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	ZNF714-67	NM_182515	exon5	c.T1268C	p.L423P	AGAAACTCTACAA	.	17.0	6.0	9.0	0.0	.	Atlas-SNP
NLRP9	338321	hgsc.bcm.edu	37	19	56243992	56243992	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	NLRP9-294	NM_176820	exon2	c.G1205A	p.G402E	CAAATTCCCTCTG	.	69.0	23.0	76.0	0.0	.	Atlas-SNP
CELA3B	23436	hgsc.bcm.edu	37	1	22304887	22304887	+	Silent	SNP	T	T	C	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	CELA3B-91	NM_007352	exon2	c.T69C	p.S23S	TTCCTCTCGCCCT	.	118.0	72.0	169.0	0.0	.	Atlas-SNP
DCST1	149095	hgsc.bcm.edu	37	1	155020586	155020586	+	Silent	SNP	A	A	G	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	DCST1-92	NM_001143687	exon15	c.A1734G	p.A578A	AAGAGCAGCCTTC	.	66.0	4.0	84.0	0.0	.	Atlas-SNP
ASPM	259266	hgsc.bcm.edu	37	1	197071136	197071136	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	ASPM-615	NM_018136	exon18	c.G7245C	p.Q2415H	CCTACTCTGAATA	.	46.0	28.0	74.0	0.0	.	Atlas-SNP
RBM39	9584	hgsc.bcm.edu	37	20	34292408	34292408	+	Silent	SNP	G	G	T	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	RBM39-91	NM_001242599	exon16	c.C1522A	p.R508R	TTCATCGTCTACT	.	95.0	5.0	70.0	0.0	.	Atlas-SNP
NEFH	4744	hgsc.bcm.edu	37	22	29885594	29885594	+	Silent	SNP	A	A	T	rs79235463	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	NEFH-90	NM_021076	exon4	c.A1965T	p.P655P	GTCCCCAGAGAAG	.	207.0	60.0	316.0	0.0	A|0.500;T|0.500	Atlas-SNP
TTN	7273	hgsc.bcm.edu	37	2	179427229	179427229	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	TTN-636	NM_001267550	exon326	c.G83630A	p.R27877H	GTATTACGGGTCA	.	81.0	54.0	138.0	0.0	.	Atlas-SNP
UBA5	79876	hgsc.bcm.edu	37	3	132387706	132387706	+	Silent	SNP	T	T	C	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	UBA5-226	NM_198329	exon4	c.T174C	p.N58N	TATGAATAGACTT	.	100.0	48.0	72.0	0.0	.	Atlas-SNP
CRIPAK	285464	hgsc.bcm.edu	37	4	1388974	1388974	+	Silent	SNP	T	T	C	rs71614969	bycluster	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	CRIPAK-90	NM_175918	exon1	c.T675C	p.D225D	TGCCGATGCGGAG	.	21.0	17.0	9.0	0.0	C|1.000;|0.000	Atlas-SNP
FAM47E-STBD1	0	hgsc.bcm.edu	37	4	77189842	77189842	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	.	NM_001242939	exon4	c.G590T	p.G197V	ACGCAGGCCAATG	.	86.0	5.0	61.0	0.0	.	Atlas-SNP
RANBP17	64901	hgsc.bcm.edu	37	5	170640671	170640671	+	Silent	SNP	T	T	A	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	RANBP17-524	NM_022897	exon21	c.T2268A	p.V756V	TGCTGTTGAACGG	.	234.0	65.0	101.0	0.0	.	Atlas-SNP
LMNB1	4001	hgsc.bcm.edu	37	5	126113295	126113297	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	AGA	AGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	LMNB1-226	NM_005573	exon1	c.94_96del	p.32_32del	.	.	260.0	61.0	59.0	0.0	.	Atlas-Indel
HOXA9	3205	hgsc.bcm.edu	37	7	27203337	27203337	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	HOXA9-1082	NM_152739	exon2	c.G704C	p.R235P	TACCTGCGGTCCC	.	143.0	56.0	119.0	0.0	.	Atlas-SNP
CNTNAP2	26047	hgsc.bcm.edu	37	7	146805372	146805372	+	Silent	SNP	A	A	G	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	CNTNAP2-100	NM_014141	exon5	c.A684G	p.G228G	GCACGGAGAAGGA	.	153.0	67.0	114.0	0.0	.	Atlas-SNP
DMRT2	10655	hgsc.bcm.edu	37	9	1056586	1056586	+	Silent	SNP	A	A	G	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	DMRT2-514	NM_181872	exon4	c.A999G	p.R333R	TTATAGACAGTAT	.	152.0	58.0	103.0	0.0	.	Atlas-SNP
SVEP1	79987	hgsc.bcm.edu	37	9	113168503	113168503	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	SVEP1-75	NM_153366	exon38	c.C9377T	p.P3126L	ACAGACGGTGGGG	.	255.0	124.0	154.0	0.0	.	Atlas-SNP
PHF2	5253	hgsc.bcm.edu	37	9	96435947	96435954	+	Frame_Shift_Del	DEL	GCCTGCAG	GCCTGCAG	-	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	GCCTGCAG	GCCTGCAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	PHF2-91	NM_005392	exon18	c.2428_2435del	p.810_812del	.	.	214.0	74.0	183.0	0.0	.	Atlas-Indel
ZRSR2	8233	hgsc.bcm.edu	37	X	15821812	15821812	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	ZRSR2-133	NM_005089	exon4	c.C205G	p.Q69E	GATAGGCAAAGAT	.	417.0	147.0	370.0	0.0	.	Atlas-SNP
ARHGAP36	158763	hgsc.bcm.edu	37	X	130218194	130218194	+	Silent	SNP	A	A	T	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	ARHGAP36-133	NM_144967	exon5	c.A561T	p.A187A	GGGTGCAGTGTCT	.	130.0	54.0	121.0	0.0	.	Atlas-SNP
