Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Algorithm
MAP3K8	1326	hgsc.bcm.edu	37	10	30740635	30740635	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	MAP3K8-981	NM_005204	exon6	c.G835A	p.E279K	ATGACCGAAGATG	.	79.0	7.0	95.0	0.0	.	Atlas-SNP
WDFY4	57705	hgsc.bcm.edu	37	10	49951215	49951229	+	In_Frame_Del	DEL	GGGACCCTGTCAATG	GGGACCCTGTCAATG	-	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	GGGACCCTGTCAATG	GGGACCCTGTCAATG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	WDFY4-22	NM_020945	exon12	c.2080_2094del	p.694_698del	.	.	120.0	29.0	194.0	0.0	.	Atlas-Indel
MEN1	4221	hgsc.bcm.edu	37	11	64574681	64574681	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	MEN1-3017	NM_130802	exon5	c.G809A	p.W270X	AGCAGCCAGAGCA	.	23.0	14.0	45.0	0.0	.	Atlas-SNP
KRT85	3891	hgsc.bcm.edu	37	12	52757872	52757872	+	Silent	SNP	G	G	A	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	KRT85-91	NM_002283	exon4	c.C766T	p.L256L	GCCTCAGGAAGCT	.	157.0	26.0	194.0	0.0	.	Atlas-SNP
ARL6IP4	51329	hgsc.bcm.edu	37	12	123465730	123465730	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	ARL6IP4-90	NM_016638	exon2	c.G413T	p.R138L	GCAGCCGGTCCCG	.	154.0	14.0	143.0	0.0	.	Atlas-SNP
EP400	57634	hgsc.bcm.edu	37	12	132547093	132547094	+	In_Frame_Ins	INS	-	-	CAGCAGCAG	rs10902490	bycluster;by2hit2allele;byhapmap	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	EP400-520	NM_015409	exon47	c.8181_8182insCAGCAGCAG	p.Q2727delinsQQQQ	.	.	209.0	43.0	206.0	0.0	.	Atlas-Indel
TDP1	55775	hgsc.bcm.edu	37	14	90450896	90450896	+	Silent	SNP	T	T	C	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	TDP1-92	NM_001008744	exon8	c.T921C	p.D307D	TGCTGATGGAACC	.	44.0	24.0	58.0	0.0	.	Atlas-SNP
MGA	23269	hgsc.bcm.edu	37	15	42042367	42042367	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	MGA-522	NM_001164273	exon17	c.6561delT	p.V2187fs	.	.	40.0	31.0	74.0	0.0	.	Atlas-Indel
NUDT16L1	84309	hgsc.bcm.edu	37	16	4744169	4744169	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	NUDT16L1-90	NM_032349	exon2	c.G344T	p.R115L	ACGCGCGGCAGCT	.	29.0	4.0	6.0	0.0	.	Atlas-SNP
CNEP1R1	255919	hgsc.bcm.edu	37	16	50063678	50063678	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	.	NM_153261	exon4	c.G191T	p.W64L	GTGCCTGGAACTG	.	105.0	14.0	97.0	0.0	.	Atlas-SNP
ASXL3	80816	hgsc.bcm.edu	37	18	31324560	31324560	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	ASXL3-49	NM_030632	exon12	c.C4748T	p.A1583V	AGCAGGCACGTGG	.	28.0	23.0	43.0	0.0	.	Atlas-SNP
CLPP	8192	hgsc.bcm.edu	37	19	6364521	6364521	+	Silent	SNP	G	G	A	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	CLPP-91	NM_006012	exon4	c.G426A	p.P142P	CAACCCGATCTGC	.	186.0	12.0	138.0	0.0	.	Atlas-SNP
ZNF208	7757	hgsc.bcm.edu	37	19	22171652	22171652	+	Silent	SNP	C	C	T	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	ZNF208-7	NM_007153	exon2	c.G63A	p.L21L	AGTGTCCAGGCAT	.	189.0	22.0	154.0	0.0	.	Atlas-SNP
PPP5C	5536	hgsc.bcm.edu	37	19	46857169	46857169	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	PPP5C-227	NM_001204284	exon2	c.A286T	p.I96F	AAGTACATCAAGG	.	248.0	116.0	259.0	1.0	.	Atlas-SNP
KRTAP25-1	100131902	hgsc.bcm.edu	37	21	31661590	31661590	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	.	NM_001128598	exon1	c.C219A	p.F73L	AGGTTGGAAACTA	.	220.0	102.0	279.0	0.0	.	Atlas-SNP
COL18A1	80781	hgsc.bcm.edu	37	21	46932128	46932128	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	COL18A1-90	NM_030582	exon42	c.C4367T	p.S1456L	ATGGCTCGGACCC	.	565.0	47.0	448.0	0.0	.	Atlas-SNP
ZNRF3	84133	hgsc.bcm.edu	37	22	29444479	29444479	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	ZNRF3-69	NM_032173	exon7	c.G715T	p.E239X	ATCATAGGTAACT	.	112.0	92.0	217.0	0.0	.	Atlas-SNP
ZNRF3	84133	hgsc.bcm.edu	37	22	29444480	29444480	+	Splice_Site	SNP	G	G	T	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	ZNRF3-69	NM_001206998	exon7	c.1015+1G>T	.	TCATAGGTAACTG	.	110.0	90.0	217.0	0.0	.	Atlas-SNP
PCDHAC1	56135	hgsc.bcm.edu	37	5	140307778	140307778	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	PCDHAC1-28	NM_031882	exon1	c.C1301T	p.S434L	CTGTGTCAGTTGC	.	108.0	49.0	110.0	0.0	.	Atlas-SNP
SAMD5	389432	hgsc.bcm.edu	37	6	147830225	147830225	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	SAMD5-68	NM_001030060	exon1	c.G161A	p.R54H	GCCGCCGTATCCT	.	40.0	7.0	59.0	0.0	.	Atlas-SNP
GPR141	353345	hgsc.bcm.edu	37	7	37780431	37780431	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	GPR141-93	NM_181791	exon1	c.A436T	p.I146F	ATTGTCATTGTGG	.	161.0	61.0	199.0	0.0	.	Atlas-SNP
RAMP3	10268	hgsc.bcm.edu	37	7	45197433	45197433	+	Silent	SNP	G	G	A	rs67477213		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	RAMP3-90	NM_005856	exon1	c.G6A	p.E2E	CATGGAGACTGGA	.	9.0	9.0	6.0	0.0	G|0.760;A|0.240	Atlas-SNP
TWISTNB	221830	hgsc.bcm.edu	37	7	19748559	19748560	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	TWISTNB-91	NM_001002926	exon1	c.81_82insA	p.P27fs	.	.	74.0	12.0	106.0	0.0	.	Atlas-Indel
SP8	221833	hgsc.bcm.edu	37	7	20824941	20824943	+	In_Frame_Del	DEL	GCC	GCC	-	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	GCC	GCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	SP8-91	NM_182700	exon2	c.494_496del	p.165_166del	.	.	59.0	15.0	34.0	0.0	.	Atlas-Indel
TWISTNB	221830	hgsc.bcm.edu	37	7	19748560	19748582	+	Frame_Shift_Del	DEL	GGCAGGACGCCAGCCTGCCCTAC	GGCAGGACGCCAGCCTGCCCTAC	-	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	GGCAGGACGCCAGCCTGCCCTAC	GGCAGGACGCCAGCCTGCCCTAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	TWISTNB-91	NM_001002926	exon1	c.59_81del	p.20_27del	.	.	66.0	12.0	93.0	0.0	.	Pindel
CHD7	55636	hgsc.bcm.edu	37	8	61769317	61769317	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	CHD7-141	NM_017780	exon34	c.C7478G	p.P2493R	GCACACCCACAAG	.	224.0	125.0	229.0	0.0	.	Atlas-SNP
TSNARE1	203062	hgsc.bcm.edu	37	8	143427201	143427201	+	Silent	SNP	C	C	A	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	TSNARE1-90	NM_145003	exon3	c.G141T	p.S47S	CTCTGGCGACGGG	.	145.0	57.0	147.0	0.0	.	Atlas-SNP
SLC24A2	25769	hgsc.bcm.edu	37	9	19786455	19786455	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	SLC24A2-517	NM_020344	exon1	c.T410C	p.L137P	ACATGCAGAATGA	.	53.0	9.0	55.0	0.0	.	Atlas-SNP
TCEAL6	158931	hgsc.bcm.edu	37	X	101395946	101395946	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	TCEAL6-91	NM_001006938	exon3	c.G358A	p.D120N	GGGAATCGTCCGT	.	170.0	39.0	307.0	0.0	.	Atlas-SNP
