Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Algorithm
PTER	9317	hgsc.bcm.edu	37	10	16526726	16526726	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	PTER-92	NM_001001484	exon3	c.G343A	p.E115K	CTTGCAGAAGAGA	.	98.0	28.0	112.0	0.0	.	Atlas-SNP
ARL5B	221079	hgsc.bcm.edu	37	10	18957485	18957485	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	ARL5B-228	NM_178815	exon3	c.C134T	p.S45F	ATACTTCTCCAAC	.	137.0	9.0	117.0	0.0	.	Atlas-SNP
HNRNPF	3185	hgsc.bcm.edu	37	10	43882684	43882684	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	HNRNPF-22	NM_001098208	exon3	c.A649G	p.R217G	ACCTCCTGGCAGT	.	144.0	39.0	128.0	0.0	.	Atlas-SNP
OR13A1	79290	hgsc.bcm.edu	37	10	45799844	45799844	+	Silent	SNP	C	C	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	OR13A1-68	NM_001004297	exon4	c.G27T	p.L9L	GACTATCAGGTGA	.	68.0	7.0	83.0	0.0	.	Atlas-SNP
WDFY4	57705	hgsc.bcm.edu	37	10	50172056	50172056	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	WDFY4-22	NM_020945	exon54	c.C8393T	p.T2798I	AAAGCACCATCCT	.	178.0	20.0	198.0	0.0	.	Atlas-SNP
STOX1	219736	hgsc.bcm.edu	37	10	70652486	70652486	+	Silent	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	STOX1-92	NM_152709	exon4	c.C2964T	p.N988N	CATAAACGTTTAA	.	95.0	10.0	92.0	0.0	.	Atlas-SNP
SPOCK2	9806	hgsc.bcm.edu	37	10	73823959	73823959	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	SPOCK2-90	NM_014767	exon10	c.A968T	p.Q323L	GCCTCCTGGATCT	.	44.0	14.0	35.0	0.0	.	Atlas-SNP
CYP2C18	1562	hgsc.bcm.edu	37	10	96447544	96447544	+	Silent	SNP	C	C	T	rs143341184	byfrequency	TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	CYP2C18-95	NM_000772	exon2	c.C186T	p.G62G	CTATGGCCCTGTG	.	216.0	21.0	216.0	0.0	C|0.999;T|0.001	Atlas-SNP
CPN1	1369	hgsc.bcm.edu	37	10	101841357	101841357	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	CPN1-227	NM_001308	exon1	c.T26C	p.L9P	AGGTGGAGGAAGA	.	103.0	6.0	91.0	0.0	.	Atlas-SNP
GPR123	84435	hgsc.bcm.edu	37	10	134942817	134942817	+	Silent	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	GPR123-90	NM_001083909	exon7	c.C1485T	p.S495S	CTACAGCTGCCCC	.	113.0	11.0	9.0	0.0	.	Atlas-SNP
MUC5B	727897	hgsc.bcm.edu	37	11	1253976	1253976	+	Missense_Mutation	SNP	A	A	G	rs76956995		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	.	NM_002458	exon17	c.A2041G	p.S681G	CAGCTCAGCGACT	.	136.0	12.0	25.0	0.0	.	Atlas-SNP
INSC	387755	hgsc.bcm.edu	37	11	15257156	15257156	+	Silent	SNP	C	C	G	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	INSC-94	NM_001042536	exon10	c.C1179G	p.T393T	TGTGACCATCTTG	.	174.0	63.0	189.0	0.0	.	Atlas-SNP
MPPED2	744	hgsc.bcm.edu	37	11	30435806	30435806	+	Silent	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	MPPED2-91	NM_001584	exon5	c.C735A	p.P245P	GAGCTTGGGCCGG	.	90.0	24.0	88.0	0.0	.	Atlas-SNP
MPPED2	744	hgsc.bcm.edu	37	11	30435807	30435807	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	MPPED2-91	NM_001584	exon5	c.C734A	p.P245H	AGCTTGGGCCGGA	.	90.0	25.0	86.0	0.0	.	Atlas-SNP
CHST1	8534	hgsc.bcm.edu	37	11	45671302	45671302	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	CHST1-95	NM_003654	exon4	c.A1172G	p.E391G	TCCTCCTCCGAGG	.	52.0	16.0	24.0	0.0	.	Atlas-SNP
PTGDR2	11251	hgsc.bcm.edu	37	11	60620261	60620261	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	.	NM_004778	exon2	c.T935A	p.L312Q	TTGCGCAGCATGT	.	105.0	42.0	21.0	0.0	.	Atlas-SNP
FGF3	2248	hgsc.bcm.edu	37	11	69625149	69625149	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	FGF3-847	NM_005247	exon3	c.A644T	p.Q215L	GGGCTCTGCTTCT	.	104.0	44.0	57.0	0.0	.	Atlas-SNP
CTSC	1075	hgsc.bcm.edu	37	11	88027678	88027678	+	Splice_Site	SNP	T	T	C	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	CTSC-90	NM_001814	exon8	c.890-2A>G	.	ACAGCCTGAAGAT	.	109.0	48.0	91.0	0.0	.	Atlas-SNP
NAALAD2	10003	hgsc.bcm.edu	37	11	89892474	89892474	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	NAALAD2-92	NM_005467	exon8	c.G958T	p.G320X	AGTATCGGACCTG	.	78.0	5.0	70.0	0.0	.	Atlas-SNP
FAT3	120114	hgsc.bcm.edu	37	11	92498090	92498090	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	FAT3-73	NM_001008781	exon5	c.C4030A	p.R1344S	ACGGCCCGCCTCC	.	100.0	36.0	96.0	0.0	.	Atlas-SNP
FAT3	120114	hgsc.bcm.edu	37	11	92592485	92592485	+	Silent	SNP	G	G	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	FAT3-73	NM_001008781	exon20	c.G11655A	p.L3885L	AATTCTGAAGGTA	.	108.0	20.0	77.0	0.0	.	Atlas-SNP
MTMR2	8898	hgsc.bcm.edu	37	11	95657077	95657077	+	Silent	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	MTMR2-91	NM_016156	exon1	c.G42A	p.P14P	CGCCGCCGGCTGG	.	294.0	54.0	36.0	0.0	.	Atlas-SNP
OR8A1	390275	hgsc.bcm.edu	37	11	124440077	124440077	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	OR8A1-69	NM_001005194	exon1	c.C113A	p.A38E	AGAGAGCAGACCT	.	145.0	52.0	130.0	0.0	.	Atlas-SNP
APLNR	187	hgsc.bcm.edu	37	11	57004442	57004442	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	APLNR-573	NM_005161	exon1	c.38delC	p.A13fs	.	.	120.0	43.0	110.0	0.0	.	Atlas-Indel
FAT3	120114	hgsc.bcm.edu	37	11	92600345	92600345	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	FAT3-73	NM_001008781	exon21	c.12096delC	p.H4032fs	.	.	53.0	25.0	6.0	0.0	.	Atlas-Indel
A2ML1	144568	hgsc.bcm.edu	37	12	8998816	8998816	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	A2ML1-93	NM_144670	exon14	c.C1681T	p.Q561X	GACAATCAGGTAA	.	190.0	35.0	187.0	0.0	.	Atlas-SNP
BICD1	636	hgsc.bcm.edu	37	12	32447047	32447047	+	Missense_Mutation	SNP	G	G	T	rs200890038	alternate_allele	TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	BICD1-153	NM_001003398	exon3	c.G546T	p.L182F	CACATTGCAGAAA	.	153.0	27.0	193.0	0.0	.	Atlas-SNP
RPAP3	79657	hgsc.bcm.edu	37	12	48090102	48090102	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	RPAP3-69	NM_001146076	exon4	c.G25A	p.V9M	GCAACACGGGATT	.	103.0	24.0	141.0	0.0	.	Atlas-SNP
OR10A7	121364	hgsc.bcm.edu	37	12	55615093	55615093	+	Silent	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	OR10A7-72	NM_001005280	exon1	c.G285T	p.V95V	TTTTGTGGGCTGT	.	134.0	39.0	142.0	0.0	.	Atlas-SNP
TBK1	29110	hgsc.bcm.edu	37	12	64878206	64878206	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	TBK1-1459	NM_013254	exon9	c.A1116C	p.K372N	CCCTAAAACTACT	.	39.0	4.0	52.0	0.0	.	Atlas-SNP
DAO	1610	hgsc.bcm.edu	37	12	109278894	109278894	+	Missense_Mutation	SNP	C	C	T	rs150448350		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	DAO-92	NM_001917	exon2	c.C112T	p.R38C	GCGGACCGCTTCA	.	126.0	20.0	152.0	0.0	C|1.000;T|0.000	Atlas-SNP
ZMYM2	7750	hgsc.bcm.edu	37	13	20625654	20625654	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	ZMYM2-685	NM_197968	exon13	c.G2374A	p.D792N	TTCTGTGATCAAC	.	93.0	10.0	97.0	0.0	.	Atlas-SNP
SACS	26278	hgsc.bcm.edu	37	13	23905553	23905553	+	Silent	SNP	T	T	C	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	SACS-298	NM_014363	exon10	c.A12462G	p.P4154P	AGGCATTGGAAGT	.	92.0	19.0	106.0	0.0	.	Atlas-SNP
FLT3	2322	hgsc.bcm.edu	37	13	28623524	28623524	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	FLT3-42117	NM_004119	exon8	c.G1033T	p.V345L	TACCTACGATGGT	.	140.0	38.0	159.0	0.0	.	Atlas-SNP
ZC3H13	23091	hgsc.bcm.edu	37	13	46559801	46559801	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	ZC3H13-92	NM_015070	exon10	c.G1351A	p.E451K	GAGGTTCTCTGTC	.	56.0	8.0	62.0	0.0	.	Atlas-SNP
ARHGEF40	55701	hgsc.bcm.edu	37	14	21552141	21552141	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	ARHGEF40-228	NM_018071	exon17	c.C3721T	p.Q1241X	GCTGTACAGCTGC	.	142.0	36.0	126.0	0.0	.	Atlas-SNP
LRFN5	145581	hgsc.bcm.edu	37	14	42360856	42360856	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	LRFN5-97	NM_152447	exon4	c.G1789C	p.E597Q	GGACACGAAGAGA	.	181.0	47.0	225.0	0.0	.	Atlas-SNP
MDGA2	161357	hgsc.bcm.edu	37	14	47343286	47343286	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	MDGA2-95	NM_182830	exon13	c.A1661G	p.N554S	CCTGTATTAGGAG	.	70.0	21.0	76.0	0.0	.	Atlas-SNP
DACT1	51339	hgsc.bcm.edu	37	14	59113460	59113460	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	DACT1-291	NM_001079520	exon4	c.G2008T	p.A670S	TACCCCGCGCCTG	.	47.0	12.0	27.0	0.0	.	Atlas-SNP
EXD2	55218	hgsc.bcm.edu	37	14	69676281	69676281	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	.	NM_001193363	exon2	c.C94T	p.R32X	CGCCGCCGAAGGA	.	83.0	15.0	67.0	0.0	.	Atlas-SNP
TNFAIP2	7127	hgsc.bcm.edu	37	14	103599182	103599182	+	Silent	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	TNFAIP2-90	NM_006291	exon8	c.C1518T	p.F506F	TGAGTTCTCAGAG	.	90.0	7.0	86.0	0.0	.	Atlas-SNP
FAM189A1	23359	hgsc.bcm.edu	37	15	29674025	29674025	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	FAM189A1-22	NM_015307	exon2	c.C230T	p.S77L	AGTCCCGACAGCA	.	123.0	13.0	161.0	0.0	.	Atlas-SNP
NARG2	79664	hgsc.bcm.edu	37	15	60747337	60747337	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	NARG2-227	NM_001276385	exon8	c.G808A	p.E270K	GCTTCTCTGCATT	.	90.0	9.0	91.0	0.0	.	Atlas-SNP
CSNK1G1	53944	hgsc.bcm.edu	37	15	64499779	64499779	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	CSNK1G1-319	NM_022048	exon7	c.G694A	p.D232N	AATCATCTCTCCG	.	77.0	22.0	117.0	0.0	.	Atlas-SNP
ADAMTS17	170691	hgsc.bcm.edu	37	15	100649210	100649210	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	ADAMTS17-228	NM_139057	exon14	c.T2000A	p.V667E	CCGTGCACGCAGA	.	113.0	33.0	137.0	0.0	.	Atlas-SNP
CERS3	204219	hgsc.bcm.edu	37	15	101042050	101042050	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	.	NM_178842	exon4	c.T5A	p.F2Y	GTCCAAAACATTC	.	78.0	15.0	73.0	0.0	.	Atlas-SNP
LRRK1	79705	hgsc.bcm.edu	37	15	101523853	101523853	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	LRRK1-602	NM_024652	exon4	c.G382T	p.A128S	GTGGCAGCGTATT	.	93.0	16.0	100.0	0.0	.	Atlas-SNP
SLC6A2	6530	hgsc.bcm.edu	37	16	55725871	55725871	+	Silent	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	SLC6A2-526	NM_001172504	exon5	c.C825T	p.F275F	GCTGTTCGTGCTC	.	190.0	36.0	155.0	0.0	.	Atlas-SNP
CHST5	23563	hgsc.bcm.edu	37	16	75563186	75563186	+	Missense_Mutation	SNP	C	C	T	rs147069503		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	CHST5-90	NM_024533	exon3	c.G1097A	p.R366H	TGCACGCGCAGGA	.	236.0	24.0	37.0	0.0	C|1.000;T|0.000	Atlas-SNP
PKD1L2	114780	hgsc.bcm.edu	37	16	81232625	81232625	+	Silent	SNP	G	G	C	rs138475973	byfrequency	TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	PKD1L2-92	NM_001076780	exon7	c.C1185G	p.A395A	GGACTCGGCCAGG	.	115.0	27.0	136.0	0.0	A|0.000;G|0.998;T|0.002	Atlas-SNP
ATP2C2	9914	hgsc.bcm.edu	37	16	84473062	84473062	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	ATP2C2-91	NM_014861	exon13	c.A1141T	p.T381S	GACAAGACGGGGA	.	207.0	39.0	193.0	0.0	.	Atlas-SNP
SPG7	6687	hgsc.bcm.edu	37	16	89598886	89598886	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	SPG7-226	NM_003119	exon9	c.G1166T	p.R389L	CTGCCCGTGTGCG	.	63.0	30.0	50.0	0.0	.	Atlas-SNP
OR1A2	26189	hgsc.bcm.edu	37	17	3101622	3101622	+	Silent	SNP	A	A	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	OR1A2-70	NM_012352	exon1	c.A810T	p.A270A	AGATGCAGTGATA	.	141.0	31.0	144.0	0.0	.	Atlas-SNP
MFSD6L	162387	hgsc.bcm.edu	37	17	8702057	8702057	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	MFSD6L-90	NM_152599	exon1	c.G382T	p.V128L	TGTTCACAGGTAG	.	85.0	22.0	75.0	0.0	.	Atlas-SNP
TMC6	11322	hgsc.bcm.edu	37	17	76121282	76121282	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	TMC6-90	NM_007267	exon6	c.C493T	p.L165F	CGCGAAGCATGTG	.	123.0	38.0	83.0	0.0	.	Atlas-SNP
ACTG1	71	hgsc.bcm.edu	37	17	79479051	79479051	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	ACTG1-91	NM_001199954	exon3	c.G241C	p.D81H	CCATGTCGTCCCA	.	142.0	27.0	105.0	0.0	.	Atlas-SNP
ANKRD30B	374860	hgsc.bcm.edu	37	18	14748541	14748541	+	Silent	SNP	G	G	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	ANKRD30B-24	NM_001145029	exon1	c.G123A	p.K41K	AGGGAAGATCCAT	.	121.0	19.0	119.0	0.0	.	Atlas-SNP
R3HDM4	91300	hgsc.bcm.edu	37	19	901464	901464	+	Silent	SNP	T	T	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	.	NM_138774	exon3	c.A309T	p.P103P	GATGCCTGGTGAT	.	23.0	6.0	25.0	0.0	.	Atlas-SNP
GIPC3	126326	hgsc.bcm.edu	37	19	3590128	3590128	+	Silent	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	GIPC3-135	NM_133261	exon6	c.C879T	p.P293P	CTTCCCCGACGAG	.	227.0	41.0	158.0	0.0	.	Atlas-SNP
ZFR2	23217	hgsc.bcm.edu	37	19	3834849	3834849	+	Silent	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	ZFR2-70	NM_015174	exon2	c.C186A	p.P62P	GGAGTGGGGCTGG	.	85.0	13.0	40.0	0.0	.	Atlas-SNP
CHST8	64377	hgsc.bcm.edu	37	19	34263233	34263233	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	CHST8-156	NM_001127895	exon5	c.C540A	p.H180Q	CCGCCACGTGTCC	.	33.0	6.0	9.0	0.0	.	Atlas-SNP
WDR62	284403	hgsc.bcm.edu	37	19	36581423	36581423	+	Splice_Site	SNP	G	G	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	WDR62-90	NM_001083961	exon16	c.2034+1G>A	.	CTGAAGGTGAGGA	.	141.0	18.0	146.0	0.0	.	Atlas-SNP
TBCB	1155	hgsc.bcm.edu	37	19	36606495	36606495	+	Silent	SNP	G	G	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	TBCB-90	NM_001281	exon1	c.G33A	p.V11V	CACGGTGACCGTT	.	192.0	32.0	135.0	0.0	.	Atlas-SNP
ZNF527	84503	hgsc.bcm.edu	37	19	37879891	37879891	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	ZNF527-70	NM_032453	exon5	c.G940A	p.D314N	AGCCACGACTTCT	.	82.0	7.0	106.0	0.0	.	Atlas-SNP
PSG4	5672	hgsc.bcm.edu	37	19	43699273	43699273	+	Silent	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	PSG4-91	NM_002780	exon4	c.A862A	p.T288T	TGGGTCGCTTTAC	.	71.0	13.0	97.0	0.0	.	Atlas-SNP
ZNF320	162967	hgsc.bcm.edu	37	19	53384618	53384618	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	ZNF320-91	NM_207333	exon4	c.T761C	p.F254S	TGACTAAAGGTCT	.	88.0	9.0	73.0	0.0	.	Atlas-SNP
DMKN	93099	hgsc.bcm.edu	37	19	36002394	36002405	+	In_Frame_Del	DEL	GCCACTGCTGCT	GCCACTGCTGCT	-	rs71940230		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	GCCACTGCTGCT	GCCACTGCTGCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	DMKN-155	NM_001126058	exon5	c.827_838del	p.276_280del	.	.	97.0	25.0	67.0	0.0	.	Atlas-Indel
TAS1R1	80835	hgsc.bcm.edu	37	1	6636573	6636573	+	Silent	SNP	C	C	A	rs200570210	alternate_allele	TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	TAS1R1,brain,glioma,+1	TAS1R1-516	NM_177540	exon3	c.C597A	p.A199A	AATTGCCTGGGAC	.	149.0	31.0	153.0	0.0	C|0.999;T|0.000	Atlas-SNP
VPS13D	55187	hgsc.bcm.edu	37	1	12520276	12520276	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	VPS13D-95	NM_018156	exon66	c.A12412T	p.S4138C	CTGACCAGTGTTA	.	79.0	12.0	113.0	0.0	.	Atlas-SNP
IGSF21	84966	hgsc.bcm.edu	37	1	18703418	18703418	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	IGSF21-156	NM_032880	exon8	c.C1226T	p.S409F	ATGGCTCCATGTA	.	137.0	10.0	71.0	0.0	.	Atlas-SNP
UBR4	23352	hgsc.bcm.edu	37	1	19536671	19536671	+	Silent	SNP	G	G	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	UBR4-612	NM_020765	exon1	c.C72T	p.D24D	GGTCGTGTCCGCC	.	88.0	19.0	13.0	0.0	.	Atlas-SNP
HSPG2	3339	hgsc.bcm.edu	37	1	22170649	22170649	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	HSPG2-141	NM_005529	exon65	c.C8608T	p.R2870W	GGTGCCGGGCAGG	.	185.0	23.0	156.0	0.0	.	Atlas-SNP
MYOM3	127294	hgsc.bcm.edu	37	1	24435087	24435087	+	Silent	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	MYOM3-93	NM_152372	exon2	c.C40A	p.R14R	GGGGCCGGGGGTC	.	309.0	52.0	230.0	0.0	.	Atlas-SNP
NIPAL3	57185	hgsc.bcm.edu	37	1	24787011	24787011	+	Silent	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	NIPAL3-90	NM_020448	exon10	c.G903T	p.L301L	CGTGCTGCACATC	.	146.0	32.0	142.0	0.0	.	Atlas-SNP
ARID1A	8289	hgsc.bcm.edu	37	1	27057916	27057916	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	ARID1A-584	NM_006015	exon3	c.C1624T	p.Q542X	ACGACACAGCAGC	.	130.0	21.0	157.0	0.0	.	Atlas-SNP
MANEAL	149175	hgsc.bcm.edu	37	1	38260241	38260241	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	MANEAL-90	NM_001113482	exon1	c.G387T	p.M129I	CGTCATGGTGCCG	.	125.0	21.0	88.0	0.0	.	Atlas-SNP
MACF1	23499	hgsc.bcm.edu	37	1	39913145	39913145	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	MACF1-165	NM_012090	exon78	c.G13470T	p.Q4490H	ATTCCAGAATTCC	.	176.0	32.0	156.0	0.0	.	Atlas-SNP
USP24	23358	hgsc.bcm.edu	37	1	55569622	55569622	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	USP24-521	NM_015306	exon42	c.A4952G	p.N1651S	TGAAGATTTGAAG	.	80.0	15.0	74.0	0.0	.	Atlas-SNP
ROR1	4919	hgsc.bcm.edu	37	1	64515549	64515549	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	ROR1-1536	NM_005012	exon3	c.G350T	p.R117L	GGCTGCGGATTAG	.	133.0	29.0	160.0	0.0	.	Atlas-SNP
HFM1	164045	hgsc.bcm.edu	37	1	91726883	91726883	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	HFM1-112	NM_001017975	exon39	c.G4272A	p.M1424I	AGACTTCATTTCA	.	153.0	18.0	136.0	0.0	.	Atlas-SNP
ARHGAP29	9411	hgsc.bcm.edu	37	1	94640288	94640288	+	Silent	SNP	G	G	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	ARHGAP29-296	NM_004815	exon23	c.C2923T	p.L975L	GGTCTAGAAGCAA	.	109.0	28.0	83.0	0.0	.	Atlas-SNP
NRAS	4893	hgsc.bcm.edu	37	1	115256530	115256530	+	Missense_Mutation	SNP	G	G	T	rs121913254	bycluster	TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	NRAS,NS,haematopoietic_neoplasm,0	NRAS-32773	NM_002524	exon3	c.C181A	p.Q61K	CTTCTTGTCCAGC	.	123.0	26.0	95.0	1.0	.	Atlas-SNP
SELENBP1	8991	hgsc.bcm.edu	37	1	151341951	151341951	+	Silent	SNP	C	C	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	SELENBP1-90	NM_003944	exon3	c.G141T	p.V47V	AACATCCACAGTG	.	110.0	32.0	90.0	0.0	.	Atlas-SNP
ATP8B2	57198	hgsc.bcm.edu	37	1	154306997	154306997	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	ATP8B2-92	NM_001005855	exon11	c.T767C	p.M256T	AGCTGATGCAAAA	.	75.0	15.0	41.0	0.0	.	Atlas-SNP
ATP8B2	57198	hgsc.bcm.edu	37	1	154317580	154317580	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	ATP8B2-92	NM_020452	exon22	c.C2519G	p.A840G	AGAAGGCTGTGAC	.	182.0	11.0	174.0	0.0	.	Atlas-SNP
ATP8B2	57198	hgsc.bcm.edu	37	1	154321000	154321000	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	ATP8B2-92	NM_020452	exon27	c.G3379T	p.D1127Y	AAGCCGGATCTCT	.	96.0	23.0	94.0	0.0	.	Atlas-SNP
CD1C	911	hgsc.bcm.edu	37	1	158263043	158263043	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	CD1C-94	NM_001765	exon5	c.G931T	p.V311L	GTGATAGTGCCCT	.	233.0	41.0	218.0	0.0	.	Atlas-SNP
SPTA1	6708	hgsc.bcm.edu	37	1	158585167	158585167	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	SPTA1-142	NM_003126	exon48	c.G6627T	p.M2209I	ACGCTTCATCGCC	.	148.0	29.0	171.0	0.0	.	Atlas-SNP
SPTA1	6708	hgsc.bcm.edu	37	1	158614085	158614085	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	SPTA1-142	NM_003126	exon30	c.G4296T	p.L1432F	CTTCATCAAAGCC	.	128.0	10.0	106.0	0.0	.	Atlas-SNP
MROH9	80133	hgsc.bcm.edu	37	1	170965695	170965695	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	.	NM_025063	exon14	c.A1385T	p.Q462L	GACTGCAACAGGT	.	139.0	18.0	144.0	0.0	.	Atlas-SNP
RC3H1	149041	hgsc.bcm.edu	37	1	173947732	173947732	+	Silent	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	RC3H1-92	NM_172071	exon6	c.G996A	p.Q332Q	AACACTCTGTGCA	.	74.0	7.0	58.0	0.0	.	Atlas-SNP
PAPPA2	60676	hgsc.bcm.edu	37	1	176659581	176659581	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	PAPPA2-548	NM_021936	exon5	c.T2446G	p.L816V	ACTGTCTTGTTTT	.	93.0	5.0	89.0	0.0	.	Atlas-SNP
RALGPS2	55103	hgsc.bcm.edu	37	1	178753600	178753600	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	RALGPS2-226	NM_152663	exon3	c.G105C	p.K35N	ATTGAAGAAAAGC	.	96.0	9.0	87.0	0.0	.	Atlas-SNP
SWT1	54823	hgsc.bcm.edu	37	1	185175896	185175896	+	Splice_Site	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	SWT1-91	NM_001105518	exon13	c.1972+1G>T	.	GTAAAGGTATGAA	.	35.0	7.0	27.0	0.0	.	Atlas-SNP
PTGS2	5743	hgsc.bcm.edu	37	1	186646005	186646005	+	Missense_Mutation	SNP	C	C	T	rs3218622	byfrequency	TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	PTGS2-227	NM_000963	exon6	c.G683A	p.R228H	AGTTTACGCTGTC	.	143.0	13.0	144.0	0.0	C|0.997;T|0.003	Atlas-SNP
USH2A	7399	hgsc.bcm.edu	37	1	216061975	216061975	+	Silent	SNP	C	C	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	USH2A-115	NM_206933	exon41	c.G8016T	p.L2672L	AGTCACCAGGGTA	.	71.0	14.0	87.0	0.0	.	Atlas-SNP
TRIM67	440730	hgsc.bcm.edu	37	1	231344731	231344731	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	TRIM67-229	NM_001004342	exon8	c.G1858T	p.D620Y	CATCGGGACATCA	.	188.0	53.0	172.0	0.0	.	Atlas-SNP
PCNXL2	80003	hgsc.bcm.edu	37	1	233362971	233362971	+	Splice_Site	SNP	C	C	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	PCNXL2-91	NM_014801	exon11	c.2504+1G>T	.	GGCTTACCGATCA	.	81.0	14.0	88.0	0.0	.	Atlas-SNP
RYR2	6262	hgsc.bcm.edu	37	1	237893641	237893641	+	Silent	SNP	G	G	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	RYR2-158	NM_001035	exon77	c.G10920A	p.L3640L	TAAACTGATAGAA	.	81.0	6.0	94.0	0.0	.	Atlas-SNP
OR14C36	127066	hgsc.bcm.edu	37	1	248512629	248512629	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	OR14C36-48	NM_001001918	exon1	c.C553T	p.L185F	CTGAAGCTCTCTT	.	130.0	33.0	114.0	0.0	.	Atlas-SNP
PADI2	11240	hgsc.bcm.edu	37	1	17418973	17418973	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	PADI2-208	NM_007365	exon6	c.586delG	p.A196fs	.	.	145.0	22.0	135.0	0.0	.	Atlas-Indel
IGSF21	84966	hgsc.bcm.edu	37	1	18703304	18703305	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	IGSF21-156	NM_032880	exon8	c.1112_1113insC	p.F371fs	.	.	136.0	25.0	121.0	0.0	.	Atlas-Indel
TGM6	343641	hgsc.bcm.edu	37	20	2378567	2378567	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	TGM6-94	NM_001254734	exon5	c.G547A	p.E183K	CAGTTTGAGGAGG	.	180.0	31.0	215.0	0.0	.	Atlas-SNP
CST1	1469	hgsc.bcm.edu	37	20	23728453	23728453	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	CST1-91	NM_001898	exon3	c.G426C	p.X142Y	AGATCCCTAGGAT	.	77.0	16.0	79.0	0.0	.	Atlas-SNP
WFDC10B	280664	hgsc.bcm.edu	37	20	44314620	44314620	+	Silent	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	WFDC10B-91	NM_172006	exon3	c.G12A	p.Q4Q	CAGAGTCTGGGGT	.	146.0	23.0	165.0	0.0	.	Atlas-SNP
FOXS1	2307	hgsc.bcm.edu	37	20	30433212	30433212	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	FOXS1-69	NM_004118	exon1	c.135delC	p.Y45fs	.	.	148.0	43.0	112.0	0.0	.	Atlas-Indel
FOXS1	2307	hgsc.bcm.edu	37	20	30433214	30433214	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	FOXS1-69	NM_004118	exon1	c.133delT	p.Y45fs	.	.	147.0	43.0	115.0	0.0	.	Atlas-Indel
FOXS1	2307	hgsc.bcm.edu	37	20	30433212	30433214	+	In_Frame_Del	DEL	TAG	TAG	-	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	TAG	TAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	FOXS1-69	NM_004118	exon1	c.133_135del	p.45_45del	.	.	150.0	34.0	112.0	0.0	.	Pindel
NEFH	4744	hgsc.bcm.edu	37	22	29885594	29885594	+	Silent	SNP	A	A	T	rs79235463	byfrequency	TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	NEFH-90	NM_021076	exon4	c.A1965T	p.P655P	GTCCCCAGAGAAG	.	287.0	91.0	295.0	0.0	A|0.500;T|0.500	Atlas-SNP
C22orf42	150297	hgsc.bcm.edu	37	22	32550280	32550280	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	C22orf42-92	NM_001010859	exon2	c.G258A	p.W86X	TTTTAACCAGCGC	.	192.0	37.0	246.0	0.0	.	Atlas-SNP
TRIOBP	11078	hgsc.bcm.edu	37	22	38120692	38120692	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	TRIOBP-136	NM_001039141	exon7	c.C2129T	p.S710F	CCTCCTCTCCTAA	.	299.0	56.0	267.0	0.0	.	Atlas-SNP
ADSL	158	hgsc.bcm.edu	37	22	40759061	40759061	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	ADSL-652	NM_000026	exon10	c.G1087T	p.V363F	GGATTGGTCGTGT	.	59.0	11.0	86.0	0.0	.	Atlas-SNP
APOB	338	hgsc.bcm.edu	37	2	21230805	21230805	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	APOB-175	NM_000384	exon26	c.G8935T	p.G2979C	GGGAGCCAGATTC	.	107.0	15.0	126.0	0.0	.	Atlas-SNP
APOB	338	hgsc.bcm.edu	37	2	21230838	21230838	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	APOB-175	NM_000384	exon26	c.C8902A	p.L2968I	CTCTTAGGTGTTT	.	112.0	36.0	130.0	0.0	.	Atlas-SNP
C2orf53	339779	hgsc.bcm.edu	37	2	27360284	27360284	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	C2orf53-90	NM_178553	exon3	c.G914A	p.G305D	GCCTGGCCCTGAG	.	202.0	66.0	138.0	0.0	.	Atlas-SNP
FBXO11	80204	hgsc.bcm.edu	37	2	48035363	48035363	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	FBXO11-659	NM_001190274	exon23	c.G2678A	p.G893E	AGTGTTCCAGCAC	.	55.0	11.0	67.0	0.0	.	Atlas-SNP
TET3	200424	hgsc.bcm.edu	37	2	74307673	74307673	+	Silent	SNP	G	G	T	rs79201046	alternate_allele	TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	.	NM_144993	exon3	c.G2229T	p.T743T	CTACACGGGGAAG	.	102.0	36.0	105.0	0.0	.	Atlas-SNP
REG3A	5068	hgsc.bcm.edu	37	2	79385822	79385822	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	REG3A-91	NM_002580	exon3	c.C150A	p.H50Q	ATAGCAGTGGGAG	.	186.0	49.0	237.0	0.0	.	Atlas-SNP
CHMP3	51652	hgsc.bcm.edu	37	2	86732983	86732983	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	.	NM_016079	exon6	c.G613A	p.E205K	CCTCCTCCTCCTC	.	46.0	11.0	62.0	0.0	.	Atlas-SNP
MRPS9	64965	hgsc.bcm.edu	37	2	105654560	105654560	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	MRPS9-90	NM_182640	exon1	c.C10G	p.P4A	GCGGCGCCCTGTG	.	135.0	40.0	139.0	0.0	.	Atlas-SNP
SAP130	79595	hgsc.bcm.edu	37	2	128757634	128757634	+	Silent	SNP	T	T	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	SAP130-94	NM_001145928	exon9	c.A1182T	p.T394T	ACCAGCTGTGGTC	.	168.0	49.0	168.0	0.0	.	Atlas-SNP
RBM45	129831	hgsc.bcm.edu	37	2	178982881	178982881	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	RBM45-22	NM_152945	exon3	c.G523C	p.A175P	CAAGCTGCCCAAG	.	60.0	15.0	58.0	0.0	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	37	2	179454036	179454036	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	TTN-636	NM_001267550	exon304	c.G62416A	p.D20806N	CTTTGTCCTTGGT	.	148.0	25.0	203.0	0.0	.	Atlas-SNP
PLCL1	5334	hgsc.bcm.edu	37	2	198948503	198948503	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	PLCL1-228	NM_006226	exon2	c.G262T	p.G88C	AAATGTGGTGGAA	.	38.0	8.0	39.0	0.0	.	Atlas-SNP
UNC80	285175	hgsc.bcm.edu	37	2	210650850	210650850	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	UNC80-90	NM_182587	exon5	c.C661G	p.H221D	TGGGAACACAGAC	.	98.0	26.0	127.0	0.0	.	Atlas-SNP
DES	1674	hgsc.bcm.edu	37	2	220288498	220288498	+	Splice_Site	SNP	G	G	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	DES-514	NM_001927	exon7	c.1245-1G>A	.	CTTTTAGGATCAA	.	75.0	11.0	75.0	0.0	.	Atlas-SNP
SPEG	10290	hgsc.bcm.edu	37	2	220309866	220309866	+	Silent	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	SPEG-383	NM_005876	exon3	c.G798T	p.R266R	AGGACGGGCGCTC	.	281.0	90.0	337.0	1.0	.	Atlas-SNP
PRR21	643905	hgsc.bcm.edu	37	2	240982312	240982312	+	Missense_Mutation	SNP	G	G	T	rs115609219	byfrequency;alternate_allele	TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	PRR21-70	NM_001080835	exon1	c.C88A	p.H30N	AGCCGTGGGGGAA	.	262.0	69.0	282.0	0.0	G|0.965;A|0.035	Atlas-SNP
C3orf20	84077	hgsc.bcm.edu	37	3	14755626	14755626	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	C3orf20-94	NM_001184958	exon8	c.A907G	p.T303A	TTCAATACTGAAG	.	83.0	15.0	68.0	0.0	.	Atlas-SNP
EPM2AIP1	9852	hgsc.bcm.edu	37	3	37034349	37034349	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	.	NM_014805	exon1	c.C220T	p.R74C	CCGCGCGCTCGCC	.	109.0	7.0	21.0	0.0	.	Atlas-SNP
BSN	8927	hgsc.bcm.edu	37	3	49694135	49694135	+	Silent	SNP	G	G	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	BSN-97	NM_003458	exon5	c.G7146A	p.L2382L	GGAGTTGGAGAAG	.	290.0	47.0	287.0	0.0	.	Atlas-SNP
ITIH1	3697	hgsc.bcm.edu	37	3	52813596	52813596	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	ITIH1-93	NM_001166434	exon3	c.G133T	p.V45L	CAGCTGGTGCATC	.	251.0	33.0	231.0	0.0	.	Atlas-SNP
CCDC54	84692	hgsc.bcm.edu	37	3	107096669	107096669	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	CCDC54-90	NM_032600	exon1	c.G235A	p.E79K	CAAGTTGAACTTT	.	94.0	7.0	108.0	0.0	.	Atlas-SNP
TMPRSS7	344805	hgsc.bcm.edu	37	3	111760858	111760858	+	Silent	SNP	C	C	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	TMPRSS7-70	NM_001042575	exon2	c.C54A	p.S18S	GGAGTCCAGGGAA	.	116.0	13.0	127.0	0.0	.	Atlas-SNP
ARGFX	503582	hgsc.bcm.edu	37	3	121305055	121305055	+	Missense_Mutation	SNP	C	C	T	rs144775023		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	ARGFX-93	NM_001012659	exon5	c.C556T	p.P186S	TTAGACCCTTCCA	.	162.0	28.0	200.0	0.0	C|0.999;T|0.000	Atlas-SNP
KY	339855	hgsc.bcm.edu	37	3	134322623	134322623	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	KY-24	NM_178554	exon11	c.T1784A	p.V595D	AATGGGACATTCC	.	92.0	8.0	88.0	0.0	.	Atlas-SNP
PPP2R3A	5523	hgsc.bcm.edu	37	3	135720486	135720486	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	PPP2R3A-662	NM_002718	exon2	c.A146T	p.H49L	TACACCATAGTGT	.	283.0	43.0	297.0	0.0	.	Atlas-SNP
IL20RB	53833	hgsc.bcm.edu	37	3	136729006	136729006	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	IL20RB-91	NM_144717	exon7	c.G877T	p.D293Y	GAGGTGGATGCCT	.	203.0	32.0	246.0	0.0	.	Atlas-SNP
ESYT3	83850	hgsc.bcm.edu	37	3	138170900	138170900	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	ESYT3-90	NM_031913	exon2	c.C338T	p.P113L	ACTTCCCGGACGT	.	60.0	13.0	24.0	0.0	.	Atlas-SNP
SUCNR1	56670	hgsc.bcm.edu	37	3	151598373	151598373	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	SUCNR1-711	NM_033050	exon3	c.G42T	p.W14C	AAACTGGCTGGCA	.	85.0	13.0	97.0	0.0	.	Atlas-SNP
GPR149	344758	hgsc.bcm.edu	37	3	154056059	154056059	+	Missense_Mutation	SNP	C	C	T	rs199967865		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	GPR149,NS,carcinoma,0	GPR149-96	NM_001038705	exon4	c.G1625A	p.R542H	CCGGAACGCTGGG	.	24.0	5.0	19.0	0.0	C|0.999;T|0.000	Atlas-SNP
MME	4311	hgsc.bcm.edu	37	3	154890002	154890002	+	Splice_Site	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	MME-516	NM_000902	exon21	c.2076+1G>T	.	GCACAGGTATTGT	.	269.0	35.0	245.0	0.0	.	Atlas-SNP
CCDC39	339829	hgsc.bcm.edu	37	3	180377267	180377267	+	Silent	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	CCDC39-72	NM_181426	exon6	c.G711A	p.R237R	TCCATCCCTCTTC	.	115.0	18.0	162.0	0.0	.	Atlas-SNP
HRG	3273	hgsc.bcm.edu	37	3	186395283	186395283	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	HRG-91	NM_000412	exon7	c.C1189A	p.H397N	CACCCCCATGGAC	.	134.0	25.0	146.0	0.0	.	Atlas-SNP
COL7A1	1294	hgsc.bcm.edu	37	3	48629232	48629232	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	COL7A1-160	NM_000094	exon11	c.1382delT	p.V461fs	.	.	241.0	46.0	258.0	0.0	.	Atlas-Indel
CCDC149	91050	hgsc.bcm.edu	37	4	24821481	24821481	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	CCDC149-68	NM_173463	exon12	c.G1159T	p.G387W	GCTTACCATCCTT	.	125.0	30.0	154.0	0.0	.	Atlas-SNP
RHOH	399	hgsc.bcm.edu	37	4	40245456	40245456	+	Silent	SNP	G	G	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	RHOH-660	NM_004310	exon3	c.G450A	p.E150E	CCTGGAGTGCTCA	.	163.0	46.0	147.0	0.0	.	Atlas-SNP
GABRA4	2557	hgsc.bcm.edu	37	4	46973176	46973176	+	Silent	SNP	C	C	T	rs147092196	alternate_allele	TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	GABRA4-156	NM_000809	exon7	c.G798A	p.P266P	AATGCACGGAATA	.	376.0	38.0	404.0	0.0	C|1.000;A|0.000	Atlas-SNP
MUC7	4589	hgsc.bcm.edu	37	4	71346591	71346591	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	MUC7-93	NM_152291	exon3	c.G130A	p.E44K	CACTTTGAATTAC	.	133.0	15.0	152.0	0.0	.	Atlas-SNP
SPARCL1	8404	hgsc.bcm.edu	37	4	88415405	88415405	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	SPARCL1-91	NM_001128310	exon5	c.C547A	p.Q183K	GGCCTTGGCTATG	.	138.0	38.0	157.0	0.0	.	Atlas-SNP
ANK2	287	hgsc.bcm.edu	37	4	114276890	114276890	+	Silent	SNP	C	C	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	ANK2-583	NM_001148	exon38	c.C7116A	p.S2372S	AGAATCCACAGCC	.	106.0	38.0	105.0	0.0	.	Atlas-SNP
ELF2	1998	hgsc.bcm.edu	37	4	139988853	139988853	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	ELF2-228	NM_006874	exon4	c.G418A	p.E140K	CTCTTGGTTTCTT	.	52.0	4.0	47.0	0.0	.	Atlas-SNP
FSTL5	56884	hgsc.bcm.edu	37	4	163032469	163032469	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	FSTL5-158	NM_020116	exon2	c.G80C	p.G27A	CCATATCCTCCTT	.	131.0	47.0	144.0	0.0	.	Atlas-SNP
PDLIM3	27295	hgsc.bcm.edu	37	4	186423472	186423472	+	Silent	SNP	C	C	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	PDLIM3-92	NM_001257963	exon5	c.G570T	p.T190T	AGTGACCGTGTCA	.	82.0	25.0	77.0	0.0	.	Atlas-SNP
TRIML2	205860	hgsc.bcm.edu	37	4	189012733	189012733	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	TRIML2-90	NM_173553	exon7	c.G958T	p.V320F	CGCCAACTGTGTC	.	151.0	25.0	150.0	0.0	.	Atlas-SNP
LRRC14B	389257	hgsc.bcm.edu	37	5	192414	192414	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	LRRC14B-69	NM_001080478	exon1	c.C761A	p.P254H	ATGCACCCCCCAC	.	149.0	17.0	53.0	0.0	.	Atlas-SNP
ADAMTS16	170690	hgsc.bcm.edu	37	5	5235150	5235150	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	ADAMTS16-275	NM_139056	exon13	c.G1874T	p.C625F	AGTTCTGTGAGGG	.	118.0	22.0	162.0	0.0	.	Atlas-SNP
DNAH5	1767	hgsc.bcm.edu	37	5	13776728	13776728	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	DNAH5-182	NM_001369	exon55	c.C9193A	p.P3065T	TGGTAGGAAGGCA	.	143.0	21.0	174.0	0.0	.	Atlas-SNP
NPR3	4883	hgsc.bcm.edu	37	5	32774925	32774925	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	NPR3-91	NM_001204376	exon4	c.C523A	p.Q175K	ATACAGCAGACTT	.	98.0	7.0	105.0	0.0	.	Atlas-SNP
DAB2	1601	hgsc.bcm.edu	37	5	39376968	39376968	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	DAB2-227	NM_001244871	exon11	c.G1858A	p.D620N	GTGGGTCTAAGGC	.	72.0	10.0	65.0	0.0	.	Atlas-SNP
HCN1	348980	hgsc.bcm.edu	37	5	45645525	45645525	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	HCN1-91	NM_021072	exon2	c.C611T	p.S204F	ATTTCAGAACTGT	.	68.0	6.0	86.0	0.0	.	Atlas-SNP
MAST4	375449	hgsc.bcm.edu	37	5	66396385	66396385	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	MAST4-647	NM_015183	exon7	c.G468C	p.R156S	ATGCAGGAACACG	.	110.0	11.0	125.0	0.0	.	Atlas-SNP
VCAN	1462	hgsc.bcm.edu	37	5	82876192	82876192	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	VCAN-238	NM_001164097	exon14	c.C7169T	p.S2390L	ACAATTCAATAAA	.	195.0	23.0	193.0	0.0	.	Atlas-SNP
ARRDC3	57561	hgsc.bcm.edu	37	5	90672527	90672527	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	ARRDC3-136	NM_020801	exon3	c.G421T	p.E141X	GCAATTCGGCTTT	.	172.0	31.0	219.0	0.0	.	Atlas-SNP
ANKRD32	84250	hgsc.bcm.edu	37	5	94031003	94031003	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	ANKRD32,NS,carcinoma,-1	ANKRD32-92	NM_032290	exon21	c.A3163G	p.M1055V	TCAGTCATGGAGT	.	85.0	15.0	107.0	1.0	.	Atlas-SNP
FAM81B	153643	hgsc.bcm.edu	37	5	94756097	94756097	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	FAM81B-92	NM_152548	exon5	c.G647T	p.R216I	GAGGAAGAGTAGC	.	97.0	6.0	93.0	0.0	.	Atlas-SNP
DMXL1	1657	hgsc.bcm.edu	37	5	118480306	118480306	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	DMXL1-92	NM_005509	exon15	c.G2542T	p.G848C	AGCCTTGGCAAAG	.	128.0	13.0	143.0	0.0	.	Atlas-SNP
ADAMTS19	171019	hgsc.bcm.edu	37	5	128844852	128844852	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	ADAMTS19-295	NM_133638	exon3	c.G812C	p.R271P	CACACCGTGTATA	.	106.0	24.0	124.0	0.0	.	Atlas-SNP
TGFBI	7045	hgsc.bcm.edu	37	5	135397233	135397233	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	TGFBI-26	NM_000358	exon15	c.C1951A	p.L651I	TCTGCGCTTGAGA	.	115.0	7.0	93.0	0.0	.	Atlas-SNP
KIF20A	10112	hgsc.bcm.edu	37	5	137522995	137522995	+	Silent	SNP	C	C	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	KIF20A-90	NM_005733	exon19	c.C2566A	p.R856R	CTTCCCCGAACAC	.	133.0	17.0	131.0	0.0	.	Atlas-SNP
PCDHA7	56141	hgsc.bcm.edu	37	5	140215326	140215326	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	PCDHA7-94	NM_018910	exon1	c.C1358T	p.P453L	ACGCCCCGGCGTT	.	403.0	53.0	170.0	0.0	.	Atlas-SNP
PCDHA11	56138	hgsc.bcm.edu	37	5	140248776	140248776	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	PCDHA11-67	NM_031861	exon1	c.C88T	p.Q30X	AGCGGCCAGCTCC	.	77.0	27.0	67.0	0.0	.	Atlas-SNP
PCDHB5	26167	hgsc.bcm.edu	37	5	140517034	140517034	+	Missense_Mutation	SNP	C	C	A	rs139801121	byfrequency;alternate_allele	TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	PCDHB5-95	NM_015669	exon1	c.C2018A	p.P673Q	CGCTGCCGGAGGC	.	103.0	9.0	12.0	0.0	C|0.986;G|0.014	Atlas-SNP
PCDHGA1	56114	hgsc.bcm.edu	37	5	140710303	140710303	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	PCDHGA1-137	NM_031993	exon1	c.C52T	p.L18F	CTGTGTCTTTCTC	.	116.0	10.0	101.0	0.0	.	Atlas-SNP
CYFIP2	26999	hgsc.bcm.edu	37	5	156727750	156727750	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	CYFIP2-22	NM_001037333	exon6	c.G415A	p.E139K	TGCAGCGAGGTGA	.	132.0	14.0	114.0	0.0	.	Atlas-SNP
IL12B	3593	hgsc.bcm.edu	37	5	158743705	158743705	+	Silent	SNP	C	C	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	IL12B-90	NM_002187	exon7	c.G975T	p.V325V	GCAGGGCACAGAT	.	218.0	63.0	208.0	0.0	.	Atlas-SNP
DOCK2	1794	hgsc.bcm.edu	37	5	169108869	169108869	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	DOCK2-97	NM_004946	exon7	c.A592G	p.I198V	GAGCGTATCAAAG	.	64.0	13.0	75.0	0.0	.	Atlas-SNP
NSD1	64324	hgsc.bcm.edu	37	5	176721447	176721447	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	NSD1-188	NM_022455	exon23	c.A7078T	p.R2360W	GACCCAAGGCTGG	.	106.0	19.0	88.0	0.0	.	Atlas-SNP
SLC34A1	6569	hgsc.bcm.edu	37	5	176824891	176824891	+	Silent	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	SLC34A1-91	NM_003052	exon13	c.G1524T	p.T508T	ACGCACGGCCAAG	.	105.0	25.0	81.0	0.0	.	Atlas-SNP
ZNF354B	117608	hgsc.bcm.edu	37	5	178310056	178310056	+	Silent	SNP	A	A	G	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	ZNF354B-92	NM_058230	exon5	c.A603G	p.L201L	AAATTTACTTAAC	.	157.0	32.0	152.0	0.0	.	Atlas-SNP
OR2Y1	134083	hgsc.bcm.edu	37	5	180166785	180166785	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	OR2Y1-68	NM_001001657	exon1	c.A274G	p.I92V	GGGTGATGGTGCG	.	192.0	21.0	168.0	0.0	.	Atlas-SNP
PRR16	51334	hgsc.bcm.edu	37	5	120021936	120021937	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	PRR16-71	NM_016644	exon3	c.378_379insA	p.T126fs	.	.	61.0	13.0	61.0	0.0	.	Atlas-Indel
TUBB2B	347733	hgsc.bcm.edu	37	6	3225064	3225064	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	TUBB2B-153	NM_178012	exon4	c.C1259T	p.S420F	TACTCGGACACCA	.	216.0	16.0	162.0	0.0	.	Atlas-SNP
HIST1H2AC	8334	hgsc.bcm.edu	37	6	26124473	26124473	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	HIST1H2AC-90	NM_003512	exon1	c.G13A	p.G5S	GGACGTGGTAAGC	.	194.0	31.0	176.0	0.0	.	Atlas-SNP
LAMA4	3910	hgsc.bcm.edu	37	6	112454057	112454057	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	LAMA4-140	NM_001105207	exon28	c.C3711A	p.F1237L	AGCAATGAAGCTC	.	42.0	6.0	57.0	0.0	.	Atlas-SNP
TAAR5	9038	hgsc.bcm.edu	37	6	132910201	132910201	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	TAAR5-91	NM_003967	exon1	c.T625A	p.F209I	GGACAAAGAACAA	.	53.0	10.0	85.0	0.0	.	Atlas-SNP
FNDC1	84624	hgsc.bcm.edu	37	6	159646689	159646689	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	FNDC1-138	NM_032532	exon8	c.G1007T	p.R336L	CAGTCCGTATTTC	.	96.0	9.0	118.0	0.0	.	Atlas-SNP
KIF25	3834	hgsc.bcm.edu	37	6	168439395	168439395	+	Silent	SNP	G	G	A	rs140066311		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	KIF25-92	NM_030615	exon5	c.G480A	p.A160A	GGTTGCGCTGCTG	.	171.0	19.0	224.0	0.0	G|1.000;A|0.000	Atlas-SNP
AUTS2	26053	hgsc.bcm.edu	37	7	70255109	70255109	+	Silent	SNP	G	G	C	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	AUTS2-92	NM_015570	exon19	c.G2907C	p.P969P	TGAGCCGGCCTAC	.	209.0	22.0	87.0	0.0	.	Atlas-SNP
GRM3	2913	hgsc.bcm.edu	37	7	86415946	86415946	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	GRM3-528	NM_000840	exon3	c.G838C	p.D280H	AGCGACGACTCGC	.	71.0	12.0	23.0	0.0	.	Atlas-SNP
MUC17	140453	hgsc.bcm.edu	37	7	100680798	100680798	+	Missense_Mutation	SNP	T	T	C	rs184841146		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	MUC17-95	NM_001040105	exon3	c.T6101C	p.I2034T	CCAGCATACAAAC	.	155.0	40.0	137.0	0.0	T|0.999;C|0.000	Atlas-SNP
GPR85	54329	hgsc.bcm.edu	37	7	112724534	112724534	+	Silent	SNP	G	G	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	GPR85-91	NM_001146267	exon3	c.C243T	p.V81V	ATTTTTGACAGAG	.	98.0	6.0	106.0	0.0	.	Atlas-SNP
NUP205	23165	hgsc.bcm.edu	37	7	135287599	135287599	+	Silent	SNP	C	C	G	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	NUP205-207	NM_015135	exon18	c.C2559G	p.L853L	ACTTCTCAATCTT	.	63.0	5.0	72.0	0.0	.	Atlas-SNP
PDIA4	9601	hgsc.bcm.edu	37	7	148702357	148702357	+	Silent	SNP	C	C	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	PDIA4-524	NM_004911	exon9	c.G1398T	p.G466G	GCTGAGCCCCAGG	.	132.0	18.0	136.0	0.0	.	Atlas-SNP
ASIC3	9311	hgsc.bcm.edu	37	7	150747958	150747958	+	Silent	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	.	NM_020321	exon4	c.C927T	p.P309P	CCCTCCCTATACC	.	58.0	5.0	49.0	0.0	.	Atlas-SNP
PTPRN2	5799	hgsc.bcm.edu	37	7	157903544	157903544	+	Silent	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	PTPRN2-295	NM_130842	exon9	c.C1569A	p.P523P	ACTGCTGGGCACC	.	60.0	8.0	45.0	0.0	.	Atlas-SNP
ERICH1	157697	hgsc.bcm.edu	37	8	618622	618622	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	ERICH1-153	NM_207332	exon5	c.C1234G	p.P412A	GTTCTGGGAACAT	.	125.0	37.0	129.0	0.0	.	Atlas-SNP
SCARA3	51435	hgsc.bcm.edu	37	8	27516477	27516477	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	SCARA3-228	NM_182826	exon5	c.G790A	p.G264S	TTCAGCGGCCTGC	.	189.0	14.0	220.0	0.0	.	Atlas-SNP
ADAM9	8754	hgsc.bcm.edu	37	8	38961141	38961141	+	Silent	SNP	A	A	G	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	ADAM9-227	NM_003816	exon22	c.A2382G	p.Q794Q	ACCACAACCGAAA	.	57.0	5.0	91.0	0.0	.	Atlas-SNP
PXDNL	137902	hgsc.bcm.edu	37	8	52321954	52321954	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	PXDNL-70	NM_144651	exon17	c.G2230A	p.A744T	GCGCCGCGCCCCA	.	52.0	13.0	24.0	0.0	.	Atlas-SNP
RP1	6101	hgsc.bcm.edu	37	8	55542715	55542715	+	Silent	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	RP1-102	NM_006269	exon4	c.C6273T	p.I2091I	AAATATCAACTGT	.	41.0	5.0	52.0	0.0	.	Atlas-SNP
RALYL	138046	hgsc.bcm.edu	37	8	85441789	85441789	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	RALYL-23	NM_001100392	exon3	c.G233T	p.R78I	ATGCCAGAGTCAT	.	143.0	55.0	141.0	0.0	.	Atlas-SNP
RMDN1	51115	hgsc.bcm.edu	37	8	87491208	87491208	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	.	NM_016033	exon7	c.C673T	p.Q225X	TTCTTTGATACCA	.	107.0	21.0	126.0	0.0	.	Atlas-SNP
GPT	2875	hgsc.bcm.edu	37	8	145730650	145730650	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	GPT-91	NM_005309	exon5	c.G517T	p.A173S	CTGGTGGCCGGCG	.	215.0	68.0	96.0	0.0	.	Atlas-SNP
FREM1	158326	hgsc.bcm.edu	37	9	14842602	14842602	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	FREM1-138	NM_144966	exon10	c.C1450A	p.H484N	CATGATGATAGCG	.	90.0	20.0	86.0	0.0	.	Atlas-SNP
OSTF1	26578	hgsc.bcm.edu	37	9	77749309	77749309	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	OSTF1-69	NM_012383	exon7	c.C406T	p.Q136X	AACCAGCAGGTAA	.	105.0	19.0	141.0	0.0	.	Atlas-SNP
KIAA0368	23392	hgsc.bcm.edu	37	9	114145493	114145493	+	Silent	SNP	G	G	C	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	KIAA0368-68	NM_001080398	exon36	c.C4335G	p.L1445L	ACACCTGAGGGCT	.	110.0	24.0	133.0	0.0	.	Atlas-SNP
PAPPA	5069	hgsc.bcm.edu	37	9	118950234	118950234	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	PAPPA-77	NM_002581	exon2	c.G1217T	p.R406L	CCCTTCGCCGCCG	.	167.0	34.0	194.0	0.0	.	Atlas-SNP
SPANXN5	494197	hgsc.bcm.edu	37	X	52826338	52826338	+	Silent	SNP	A	A	G	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	SPANXN5-90	NM_001009616	exon1	c.T51C	p.C17C	GGAGTCACAGGGG	.	169.0	28.0	192.0	0.0	.	Atlas-SNP
LONRF3	79836	hgsc.bcm.edu	37	X	118151510	118151510	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	LONRF3-289	NM_024778	exon10	c.G2014T	p.G672C	CCGAATGGCCCAG	.	82.0	13.0	78.0	0.0	.	Atlas-SNP
LONRF3	79836	hgsc.bcm.edu	37	X	118151511	118151511	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	LONRF3-289	NM_024778	exon10	c.G2015T	p.G672V	CGAATGGCCCAGC	.	80.0	13.0	78.0	0.0	.	Atlas-SNP
RBMX2	51634	hgsc.bcm.edu	37	X	129546815	129546815	+	Missense_Mutation	SNP	G	G	T	rs200680092	alternate_allele	TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	RBMX2-134	NM_016024	exon6	c.G962T	p.R321L	GTTGGCGTCACTG	.	68.0	4.0	77.0	0.0	.	Atlas-SNP
MAMLD1	10046	hgsc.bcm.edu	37	X	149638554	149638554	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	.	MAMLD1-130	NM_001177466	exon2	c.A634T	p.K212X	TCCAGCAAGGAGT	.	168.0	38.0	219.0	0.0	.	Atlas-SNP
