Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Algorithm
PCDH15	65217	hgsc.bcm.edu	37	10	55582342	55582342	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	PCDH15-193	NM_001142767	exon31	c.G5024T	p.R1675I	GTCTCTCTCCTAG	.	43.0	11.0	89.0	0.0	.	Atlas-SNP
OIT3	170392	hgsc.bcm.edu	37	10	74684374	74684374	+	Missense_Mutation	SNP	G	G	A	rs139078371		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	OIT3-70	NM_152635	exon7	c.G1339A	p.V447I	GACGAGGTCCTGA	.	214.0	40.0	152.0	0.0	G|1.000;A|0.000	Atlas-SNP
C10orf11	83938	hgsc.bcm.edu	37	10	77542776	77542776	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	C10orf11-90	NM_032024	exon1	c.A43T	p.K15X	TCAAATAAAAGGT	.	110.0	17.0	102.0	0.0	.	Atlas-SNP
OR52D1	390066	hgsc.bcm.edu	37	11	5510738	5510738	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	OR52D1-68	NM_001005163	exon1	c.G802C	p.G268R	CGCTTTGGTCACC	.	123.0	27.0	122.0	0.0	.	Atlas-SNP
FANCF	2188	hgsc.bcm.edu	37	11	22646416	22646416	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	FANCF-1083	NM_022725	exon1	c.T941C	p.L314P	TGACAGAGGCTTT	.	96.0	10.0	93.0	0.0	.	Atlas-SNP
OR5M1	390168	hgsc.bcm.edu	37	11	56380625	56380625	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	OR5M1-94	NM_001004740	exon1	c.G354A	p.M118I	CAATGCCATTGAA	.	362.0	74.0	350.0	0.0	.	Atlas-SNP
PCNXL3	399909	hgsc.bcm.edu	37	11	65386303	65386303	+	Silent	SNP	G	G	C	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	PCNXL3-46	NM_032223	exon6	c.G1470C	p.R490R	CCAGCGGACGCCT	.	34.0	12.0	18.0	0.0	.	Atlas-SNP
LRRC32	2615	hgsc.bcm.edu	37	11	76370747	76370747	+	Silent	SNP	G	G	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	LRRC32-90	NM_001128922	exon3	c.C1890A	p.I630I	GAGGATGATGATG	.	108.0	16.0	95.0	0.0	.	Atlas-SNP
TENM4	26011	hgsc.bcm.edu	37	11	78369696	78369696	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	.	NM_001098816	exon34	c.G7717T	p.A2573S	TCAAGGCAAACTT	.	114.0	11.0	114.0	0.0	.	Atlas-SNP
PDZD3	79849	hgsc.bcm.edu	37	11	119057343	119057343	+	Nonsense_Mutation	SNP	G	G	T	rs141570563	alternate_allele	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	PDZD3-153	NM_001168468	exon4	c.G274T	p.G92X	CAGGAAGGAGACA	.	210.0	57.0	130.0	0.0	G|1.000;A|0.000	Atlas-SNP
FKBP4	2288	hgsc.bcm.edu	37	12	2912330	2912330	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	FKBP4-226	NM_002014	exon10	c.C1286G	p.A429G	CAGAGGCTTCCTC	.	64.0	17.0	36.0	0.0	.	Atlas-SNP
C1S	716	hgsc.bcm.edu	37	12	7177252	7177252	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	C1S-91	NM_201442	exon12	c.T1364A	p.F455Y	TCTTCTTTGACAA	.	100.0	23.0	84.0	0.0	.	Atlas-SNP
IPO8	10526	hgsc.bcm.edu	37	12	30783824	30783824	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	IPO8-227	NM_006390	exon25	c.T3084A	p.F1028L	AAAATTAAATGCG	.	87.0	21.0	116.0	0.0	.	Atlas-SNP
LETMD1	25875	hgsc.bcm.edu	37	12	51451824	51451824	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	LETMD1-90	NM_015416	exon8	c.C925G	p.L309V	TGTTATCTCCGTG	.	118.0	23.0	73.0	0.0	.	Atlas-SNP
LRP1	4035	hgsc.bcm.edu	37	12	57594933	57594933	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	LRP1-596	NM_002332	exon65	c.T10342A	p.C3448S	AGGGACTGCCGTG	.	148.0	12.0	82.0	0.0	.	Atlas-SNP
CAND1	55832	hgsc.bcm.edu	37	12	67691276	67691276	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	CAND1-516	NM_018448	exon5	c.G581C	p.R194T	GGAAAAGAACCAT	.	102.0	20.0	112.0	0.0	.	Atlas-SNP
FAM194B	220081	hgsc.bcm.edu	37	13	46170726	46170726	+	Missense_Mutation	SNP	A	A	G	rs28548352		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	FAM194B-68	NM_182542	exon3	c.T415C	p.Y139H	CCAGATACTCTTC	.	39.0	6.0	57.0	0.0	.	Atlas-SNP
FAM194B	220081	hgsc.bcm.edu	37	13	46170735	46170735	+	Missense_Mutation	SNP	C	C	T	rs28460344		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	FAM194B-68	NM_182542	exon3	c.G406A	p.E136K	CTTCCTCCTCCAG	.	40.0	7.0	56.0	0.0	.	Atlas-SNP
FAM194B	220081	hgsc.bcm.edu	37	13	46170737	46170737	+	Missense_Mutation	SNP	T	T	C	rs200764156		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	FAM194B-68	NM_182542	exon3	c.A404G	p.E135G	TCCTCCTCCAGAT	.	41.0	7.0	55.0	0.0	.	Atlas-SNP
SLITRK6	84189	hgsc.bcm.edu	37	13	86369481	86369481	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	SLITRK6-137	NM_032229	exon2	c.C1163A	p.T388N	TCCAAAGTGAAAT	.	68.0	4.0	126.0	0.0	.	Atlas-SNP
CCDC168	643677	hgsc.bcm.edu	37	13	103389045	103389045	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	.	NM_001146197	exon4	c.G14002A	p.E4668K	GCAGTTCCTTTGT	.	24.0	6.0	35.0	0.0	.	Atlas-SNP
CCDC168	643677	hgsc.bcm.edu	37	13	103397964	103397964	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	.	NM_001146197	exon4	c.C5083A	p.Q1695K	AAAATTGTTTTAA	.	23.0	7.0	94.0	0.0	.	Atlas-SNP
TRIM9	114088	hgsc.bcm.edu	37	14	51561207	51561207	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	TRIM9-227	NM_052978	exon1	c.C451A	p.L151M	CTTCCAGTACGCG	.	136.0	9.0	71.0	0.0	.	Atlas-SNP
LGALS3	3958	hgsc.bcm.edu	37	14	55611906	55611906	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	LGALS3-514	NM_002306	exon6	c.C670T	p.R224W	AATCATCGGGTTA	.	142.0	39.0	113.0	0.0	.	Atlas-SNP
CEP128	145508	hgsc.bcm.edu	37	14	81259439	81259439	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	CEP128-91	NM_152446	exon13	c.C1225G	p.L409V	TCTCCAGTTCACG	.	85.0	20.0	78.0	0.0	.	Atlas-SNP
UNC79	57578	hgsc.bcm.edu	37	14	93962775	93962775	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	.	NM_020818	exon6	c.T200A	p.L67Q	AATTACTGGAATG	.	258.0	16.0	312.0	0.0	.	Atlas-SNP
KIF26A	26153	hgsc.bcm.edu	37	14	104644984	104644984	+	Silent	SNP	G	G	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	KIF26A-24	NM_015656	exon13	c.G5208T	p.P1736P	GCCCCCGCCCCTG	.	58.0	12.0	12.0	0.0	.	Atlas-SNP
OTUB2	78990	hgsc.bcm.edu	37	14	94510351	94510353	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	CTT	CTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	OTUB2-500	NM_023112	exon4	c.252_254del	p.84_85del	.	.	249.0	57.0	219.0	0.0	.	Atlas-Indel
NPAP1	23742	hgsc.bcm.edu	37	15	24921967	24921967	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	.	NM_018958	exon1	c.C953A	p.P318H	CTCCTCCCAGAGC	.	43.0	15.0	39.0	0.0	.	Atlas-SNP
DUOX1	53905	hgsc.bcm.edu	37	15	45453135	45453135	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	DUOX1-142	NM_017434	exon30	c.T3803A	p.L1268Q	TGAGCCTGAGCCG	.	163.0	15.0	147.0	0.0	.	Atlas-SNP
UNC13C	440279	hgsc.bcm.edu	37	15	54542551	54542551	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	UNC13C-51	NM_001080534	exon6	c.G3357T	p.W1119C	CCTGTGGGGCATT	.	190.0	47.0	261.0	0.0	.	Atlas-SNP
ISLR	3671	hgsc.bcm.edu	37	15	74467204	74467204	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	ISLR-155	NM_201526	exon2	c.A5G	p.Q2R	CCATGCAGGAGCT	.	41.0	14.0	39.0	0.0	.	Atlas-SNP
PTPN9	5780	hgsc.bcm.edu	37	15	75809664	75809665	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	PTPN9-226	NM_002833	exon5	c.464_465del	p.155_155del	.	.	89.0	29.0	101.0	0.0	.	Atlas-Indel
DNASE1	1773	hgsc.bcm.edu	37	16	3705910	3705910	+	Missense_Mutation	SNP	G	G	C	rs143363152	alternate_allele	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	DNASE1-90	NM_005223	exon3	c.G208C	p.V70L	ACTGCCGTGGGGA	.	204.0	50.0	126.0	0.0	G|1.000;T|0.000	Atlas-SNP
ADCY7	113	hgsc.bcm.edu	37	16	50326734	50326734	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	ADCY7-91	NM_001114	exon4	c.C685T	p.Q229X	CGCCAGCAGGTGG	.	47.0	14.0	33.0	0.0	.	Atlas-SNP
CDH1	999	hgsc.bcm.edu	37	16	68867311	68867314	+	Frame_Shift_Del	DEL	CAGA	CAGA	-	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	CAGA	CAGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	CDH1-3377	NM_004360	exon16	c.2557_2560del	p.853_854del	.	.	146.0	24.0	85.0	0.0	.	Atlas-Indel
MYH2	4620	hgsc.bcm.edu	37	17	10428659	10428659	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	MYH2-194	NM_001100112	exon33	c.T4544A	p.I1515N	TCAGAAATCTCCT	.	60.0	20.0	78.0	0.0	.	Atlas-SNP
UBB	7314	hgsc.bcm.edu	37	17	16285604	16285604	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	UBB-47	NM_018955	exon2	c.A383G	p.D128G	TGGAAGATGGCCG	.	437.0	83.0	214.0	0.0	.	Atlas-SNP
NEK8	284086	hgsc.bcm.edu	37	17	27064883	27064883	+	Silent	SNP	G	G	A	rs146798411		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	NEK8-335	NM_178170	exon7	c.G936A	p.S312S	ACTGTCGTCAGTG	.	237.0	35.0	70.0	0.0	G|1.000;A|0.000	Atlas-SNP
BECN1	8678	hgsc.bcm.edu	37	17	40963676	40963676	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	BECN1-228	NM_003766	exon11	c.A1181G	p.Y394C	GACCTGTAGGGAA	.	96.0	26.0	85.0	0.0	.	Atlas-SNP
MARCH10	162333	hgsc.bcm.edu	37	17	60779069	60779069	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	MARCH10-90	NM_001100875	exon11	c.G2422A	p.V808I	GCTAGACGACCTG	.	109.0	16.0	59.0	0.0	.	Atlas-SNP
RAB37	326624	hgsc.bcm.edu	37	17	72740494	72740494	+	Silent	SNP	C	C	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	RAB37-230	NM_001006638	exon6	c.C414T	p.I138I	GGTGATCATGCTG	.	124.0	10.0	62.0	0.0	.	Atlas-SNP
DNAH17	8632	hgsc.bcm.edu	37	17	76424635	76424635	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	DNAH17-142	NM_173628	exon77	c.12560delC	p.A4187fs	.	.	153.0	43.0	86.0	0.0	.	Atlas-Indel
ANKRD30B	374860	hgsc.bcm.edu	37	18	14763720	14763720	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	ANKRD30B-24	NM_001145029	exon7	c.C856A	p.P286T	GCTGCACCCTTGG	.	55.0	11.0	46.0	0.0	.	Atlas-SNP
ASXL3	80816	hgsc.bcm.edu	37	18	31323513	31323513	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	ASXL3-49	NM_030632	exon12	c.A3701T	p.N1234I	ATAAAAATTCTGT	.	37.0	15.0	51.0	0.0	.	Atlas-SNP
SETBP1	26040	hgsc.bcm.edu	37	18	42531586	42531586	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	SETBP1-155	NM_015559	exon4	c.G2281A	p.V761M	CCAGCCGTGCCTT	.	152.0	27.0	158.0	0.0	.	Atlas-SNP
SERPINB10	5273	hgsc.bcm.edu	37	18	61587036	61587036	+	Silent	SNP	C	C	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	SERPINB10-227	NM_005024	exon4	c.C387T	p.D129D	AGAAGACATGAAA	.	48.0	7.0	87.0	0.0	.	Atlas-SNP
KDM4B	23030	hgsc.bcm.edu	37	19	5041154	5041154	+	Silent	SNP	T	T	C	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	KDM4B-226	NM_015015	exon5	c.T324C	p.C108C	GTACTGTACCCCG	.	140.0	12.0	104.0	0.0	.	Atlas-SNP
KEAP1	9817	hgsc.bcm.edu	37	19	10600462	10600462	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	KEAP1-637	NM_203500	exon4	c.G1393A	p.V465M	CAGCCACGCCCAC	.	264.0	27.0	60.0	0.0	.	Atlas-SNP
SMARCA4	6597	hgsc.bcm.edu	37	19	11097013	11097013	+	Silent	SNP	C	C	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	SMARCA4-1523	NM_003072	exon4	c.C504T	p.G168G	CCGGGGCCCAACC	.	136.0	17.0	50.0	0.0	.	Atlas-SNP
GPATCH1	55094	hgsc.bcm.edu	37	19	33579080	33579080	+	Silent	SNP	T	T	A	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	GPATCH1-91	NM_018025	exon2	c.T114A	p.T38T	TCAGACTGTCAGA	.	45.0	11.0	31.0	0.0	.	Atlas-SNP
CYP2B6	1555	hgsc.bcm.edu	37	19	41509976	41509976	+	Missense_Mutation	SNP	T	T	C	rs138912615		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	CYP2B6-92	NM_000767	exon2	c.T242C	p.V81A	GTGGAGTAGAGGC	.	355.0	46.0	180.0	0.0	T|1.000;C|0.000	Atlas-SNP
CEACAM6	4680	hgsc.bcm.edu	37	19	42270108	42270108	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	CEACAM6-91	NM_002483	exon5	c.T976C	p.S326P	GTCCTCTCAGCTG	.	176.0	16.0	92.0	0.0	.	Atlas-SNP
DMRTC2	63946	hgsc.bcm.edu	37	19	42354402	42354402	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	DMRTC2-90	NM_001040283	exon7	c.C778G	p.P260A	CTCCAGCCCTGTG	.	127.0	20.0	92.0	0.0	.	Atlas-SNP
CIC	23152	hgsc.bcm.edu	37	19	42795782	42795782	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	CIC-591	NM_015125	exon11	c.T2771A	p.V924E	TCCTAGTGCCTCT	.	145.0	28.0	43.0	0.0	.	Atlas-SNP
SCAF1	58506	hgsc.bcm.edu	37	19	50157674	50157674	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	SCAF1-68	NM_021228	exon8	c.C3385G	p.Q1129E	CTGATCCAGGCCA	.	196.0	37.0	97.0	0.0	.	Atlas-SNP
LILRA4	23547	hgsc.bcm.edu	37	19	54849247	54849247	+	Silent	SNP	C	C	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	LILRA4-91	NM_012276	exon4	c.G615A	p.V205V	CGACCACACGTAT	.	102.0	16.0	64.0	0.0	.	Atlas-SNP
LILRA2	11027	hgsc.bcm.edu	37	19	55098715	55098715	+	Missense_Mutation	SNP	C	C	T	rs149580797	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	LILRA2-91	NM_001130917	exon8	c.C1354T	p.R452C	CTCATCCGCATGG	.	266.0	36.0	142.0	0.0	C|0.996;T|0.004	Atlas-SNP
PEG3	5178	hgsc.bcm.edu	37	19	57335765	57335765	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	PEG3-164	NM_001146186	exon1	c.G259C	p.E87Q	AGAGCTCGATGAT	.	218.0	60.0	225.0	0.0	.	Atlas-SNP
ZNF814	730051	hgsc.bcm.edu	37	19	58385790	58385790	+	Missense_Mutation	SNP	G	G	T	rs111727691		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	.	NM_001144989	exon3	c.C968A	p.P323H	TCATAAGGTCTTT	.	108.0	15.0	42.0	0.0	G|0.500;T|0.500	Atlas-SNP
ZNF814	730051	hgsc.bcm.edu	37	19	58385793	58385793	+	Missense_Mutation	SNP	C	C	T	rs113623532		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	.	NM_001144989	exon3	c.G965A	p.R322K	TAAGGTCTTTTCC	.	104.0	15.0	42.0	0.0	C|0.500;T|0.500	Atlas-SNP
ZNF814	730051	hgsc.bcm.edu	37	19	58385798	58385798	+	Silent	SNP	C	C	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	.	NM_001144989	exon3	c.G960A	p.G320G	TCTTTTCCCAGTG	.	100.0	15.0	35.0	0.0	.	Atlas-SNP
ZNF814	730051	hgsc.bcm.edu	37	19	58385799	58385799	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	.	NM_001144989	exon3	c.G959A	p.G320E	CTTTTCCCAGTGT	.	96.0	15.0	35.0	0.0	.	Atlas-SNP
SBK2	646643	hgsc.bcm.edu	37	19	56041209	56041210	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	SBK2-68	NM_001101401	exon4	c.938_939insC	p.R313fs	.	.	57.0	13.0	8.0	0.0	.	Pindel
MACF1	23499	hgsc.bcm.edu	37	1	39920766	39920766	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	MACF1-165	NM_012090	exon86	c.T14895A	p.H4965Q	TGAGCATCAGGTA	.	115.0	8.0	110.0	0.0	.	Atlas-SNP
NFIA	4774	hgsc.bcm.edu	37	1	61554105	61554105	+	Silent	SNP	T	T	A	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	NFIA-92	NM_001145512	exon3	c.T447A	p.V149V	TTGTGTTCTTTCC	.	143.0	23.0	198.0	0.0	.	Atlas-SNP
NFIA	4774	hgsc.bcm.edu	37	1	61554106	61554106	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	NFIA-92	NM_001145512	exon3	c.C448T	p.L150F	TGTGTTCTTTCCA	.	139.0	22.0	196.0	0.0	.	Atlas-SNP
GATAD2B	57459	hgsc.bcm.edu	37	1	153800736	153800736	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	GATAD2B-90	NM_020699	exon2	c.A88T	p.K30X	GTCGCTTTGCCAG	.	51.0	17.0	25.0	0.0	.	Atlas-SNP
NUP210L	91181	hgsc.bcm.edu	37	1	154067601	154067601	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	NUP210L-77	NM_207308	exon15	c.C1997A	p.T666K	TGCCATGTCACCA	.	56.0	4.0	36.0	0.0	.	Atlas-SNP
CADM3	57863	hgsc.bcm.edu	37	1	159170626	159170626	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	CADM3-92	NM_021189	exon10	c.G1213A	p.D405N	GGCTCCGACGATG	.	392.0	114.0	343.0	0.0	.	Atlas-SNP
DUSP27	92235	hgsc.bcm.edu	37	1	167095939	167095939	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	DUSP27-71	NM_001080426	exon5	c.G1571C	p.G524A	GCGTGGGCTCTGA	.	477.0	28.0	397.0	0.0	.	Atlas-SNP
RGSL1	353299	hgsc.bcm.edu	37	1	182525184	182525184	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	RGSL1-226	NM_001137669	exon21	c.G3223C	p.E1075Q	AAAAAAGAGAAGT	.	136.0	36.0	145.0	0.0	.	Atlas-SNP
SLC26A9	115019	hgsc.bcm.edu	37	1	205890762	205890762	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	SLC26A9-92	NM_134325	exon17	c.C1987A	p.H663N	GGGTGTGGAAGGT	.	85.0	26.0	62.0	0.0	.	Atlas-SNP
TGFB2	7042	hgsc.bcm.edu	37	1	218609421	218609421	+	Silent	SNP	C	C	G	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	TGFB2-710	NM_003238	exon5	c.C864G	p.S288S	GCCCTCCTACAGA	.	291.0	36.0	318.0	0.0	.	Atlas-SNP
TOP1	7150	hgsc.bcm.edu	37	20	39746844	39746844	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	TOP1-1148	NM_003286	exon18	c.A1858T	p.N620Y	TCTTATAACCGTG	.	351.0	47.0	230.0	0.0	.	Atlas-SNP
RBPJL	11317	hgsc.bcm.edu	37	20	43945172	43945172	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	RBPJL-227	NM_014276	exon11	c.C1232T	p.A411V	TCCACGCGGGGCT	.	397.0	25.0	193.0	0.0	.	Atlas-SNP
OGFR	11054	hgsc.bcm.edu	37	20	61444569	61444569	+	Silent	SNP	A	A	G	rs3204348	byfrequency;by1000genomes	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	OGFR-68	NM_007346	exon7	c.A1602G	p.P534P	CGAGCCAGCCGAG	.	94.0	9.0	19.0	0.0	A|0.979;G|0.021	Atlas-SNP
ZSWIM3	140831	hgsc.bcm.edu	37	20	44505469	44505472	+	Frame_Shift_Del	DEL	TATT	TATT	-	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	TATT	TATT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	ZSWIM3,NS,carcinoma,-1	ZSWIM3-92	NM_080752	exon2	c.271_274del	p.91_92del	.	.	191.0	40.0	115.0	0.0	.	Atlas-Indel
PI4KA	5297	hgsc.bcm.edu	37	22	21150535	21150535	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	PI4KA-454	NM_058004	exon18	c.G2176C	p.V726L	CATCCACCAGGTG	.	229.0	64.0	191.0	0.0	.	Atlas-SNP
PACSIN2	11252	hgsc.bcm.edu	37	22	43289603	43289603	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	PACSIN2-68	NM_001184971	exon3	c.G77A	p.R26Q	ACAGTCCGCTTGT	.	191.0	32.0	132.0	0.0	.	Atlas-SNP
PROKR1	10887	hgsc.bcm.edu	37	2	68873425	68873425	+	Missense_Mutation	SNP	A	A	G	rs147256235		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	PROKR1-523	NM_138964	exon1	c.A472G	p.I158V	CTGGCCATCGCCA	.	150.0	32.0	100.0	0.0	A|1.000;G|0.000	Atlas-SNP
HK2	3099	hgsc.bcm.edu	37	2	75115104	75115104	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	HK2-252	NM_000189	exon16	c.G2294T	p.G765V	AGCGTGGACTACT	.	275.0	39.0	188.0	0.0	.	Atlas-SNP
AFF3	3899	hgsc.bcm.edu	37	2	100167958	100167958	+	Missense_Mutation	SNP	C	C	T	rs150108936		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	AFF3-230	NM_001025108	exon24	c.G3734A	p.R1245Q	CTGTTCCGCAGCC	.	90.0	26.0	49.0	0.0	C|1.000;T|0.000	Atlas-SNP
DNPEP	23549	hgsc.bcm.edu	37	2	220250725	220250725	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	DNPEP-90	NM_012100	exon6	c.C555G	p.I185M	CTCGTTGATATTT	.	260.0	57.0	130.0	0.0	.	Atlas-SNP
PRRT3	285368	hgsc.bcm.edu	37	3	9988097	9988097	+	Silent	SNP	G	G	A	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	PRRT3-90	NM_207351	exon4	c.C2760T	p.R920R	CCCGTGGCGCCAG	.	258.0	67.0	126.0	0.0	.	Atlas-SNP
CCDC13	152206	hgsc.bcm.edu	37	3	42799655	42799655	+	Silent	SNP	G	G	A	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	CCDC13-91	NM_144719	exon2	c.C183T	p.H61H	CCCTGCGTGGAGA	.	129.0	29.0	76.0	0.0	.	Atlas-SNP
SACM1L	22908	hgsc.bcm.edu	37	3	45776839	45776839	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	SACM1L-91	NM_014016	exon14	c.C1213T	p.R405C	TTAGCTCGTCGTT	.	119.0	35.0	109.0	0.0	.	Atlas-SNP
CACNA1D	776	hgsc.bcm.edu	37	3	53844133	53844133	+	Silent	SNP	G	G	C	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	CACNA1D-100	NM_001128839	exon45	c.G5928C	p.L1976L	CCCCCTGATCCAA	.	177.0	38.0	128.0	0.0	.	Atlas-SNP
PTPLB	201562	hgsc.bcm.edu	37	3	123247281	123247281	+	Silent	SNP	C	C	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	PTPLB-226	NM_198402	exon4	c.G333A	p.V111V	TGACATCACCTGG	.	43.0	6.0	83.0	0.0	.	Atlas-SNP
ASTE1	28990	hgsc.bcm.edu	37	3	130737507	130737507	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	ASTE1-90	NM_014065	exon4	c.G1356T	p.Q452H	AATGGTCTGTTTC	.	117.0	12.0	160.0	0.0	.	Atlas-SNP
LRRC31	79782	hgsc.bcm.edu	37	3	169558017	169558017	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	LRRC31-93	NM_024727	exon9	c.C1412T	p.P471L	AACATGGTCCACC	.	217.0	24.0	137.0	0.0	.	Atlas-SNP
SCAP	22937	hgsc.bcm.edu	37	3	47455478	47455481	+	Frame_Shift_Del	DEL	CTGT	CTGT	-	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	CTGT	CTGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	SCAP-91	NM_012235	exon23	c.3704_3707del	p.1235_1236del	.	.	136.0	38.0	103.0	0.0	.	Atlas-Indel
JAKMIP1	152789	hgsc.bcm.edu	37	4	6114570	6114570	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	JAKMIP1-292	NM_144720	exon2	c.A8G	p.K3R	CCTTTCTTCGACA	.	85.0	27.0	60.0	0.0	.	Atlas-SNP
INTU	27152	hgsc.bcm.edu	37	4	128628123	128628123	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	INTU-91	NM_015693	exon12	c.A2270T	p.K757M	TGCTTAAGGTGTG	.	127.0	17.0	151.0	0.0	.	Atlas-SNP
PCDH10	57575	hgsc.bcm.edu	37	4	134072249	134072249	+	Silent	SNP	T	T	C	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	PCDH10-92	NM_032961	exon1	c.T954C	p.Y318Y	GGACTATGAAGAG	.	156.0	40.0	123.0	0.0	.	Atlas-SNP
TTC29	83894	hgsc.bcm.edu	37	4	147830303	147830303	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	TTC29-90	NM_031956	exon5	c.A275C	p.D92A	AGGGCATCCCACC	.	49.0	10.0	57.0	0.0	.	Atlas-SNP
GPR98	84059	hgsc.bcm.edu	37	5	90055402	90055402	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	GPR98-103	NM_032119	exon58	c.G12117C	p.K4039N	AGAAAAGACTGTA	.	108.0	8.0	90.0	0.0	.	Atlas-SNP
ST8SIA4	7903	hgsc.bcm.edu	37	5	100147798	100147798	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	ST8SIA4-153	NM_005668	exon5	c.C833A	p.P278H	GTGCTGGGTCTTT	.	87.0	5.0	51.0	0.0	.	Atlas-SNP
ZNF474	133923	hgsc.bcm.edu	37	5	121487769	121487769	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	ZNF474-90	NM_207317	exon2	c.C84G	p.N28K	TATCAACCAAGCT	.	92.0	20.0	94.0	0.0	.	Atlas-SNP
CHSY3	337876	hgsc.bcm.edu	37	5	129241282	129241282	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	CHSY3-25	NM_175856	exon1	c.T760C	p.Y254H	GACAAGTATGAGT	.	276.0	39.0	148.0	0.0	.	Atlas-SNP
PCDHA12	56137	hgsc.bcm.edu	37	5	140255507	140255507	+	Silent	SNP	T	T	A	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	.	NM_031864	exon1	c.T450A	p.S150S	GGACTCTCATTTT	.	197.0	38.0	148.0	0.0	.	Atlas-SNP
PCDHGA8	9708	hgsc.bcm.edu	37	5	140774156	140774156	+	Silent	SNP	G	G	A	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	.	NM_032088	exon1	c.G1776A	p.V592V	GGTGGTGGCGGTG	.	353.0	64.0	84.0	0.0	.	Atlas-SNP
PCDHGB7	56099	hgsc.bcm.edu	37	5	140799544	140799544	+	Silent	SNP	G	G	A	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	PCDHGB7-29	NM_032101	exon1	c.G2118A	p.A706A	CCTCGCGGTGATT	.	202.0	32.0	142.0	0.0	.	Atlas-SNP
KCTD16	57528	hgsc.bcm.edu	37	5	143853595	143853595	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	KCTD16-137	NM_020768	exon4	c.T1205C	p.F402S	AGGATTTCCTAAA	.	118.0	8.0	133.0	0.0	.	Atlas-SNP
FBXO38	81545	hgsc.bcm.edu	37	5	147820759	147820759	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	FBXO38-231	NM_030793	exon21	c.C3122G	p.P1041R	CAGAGCCCAACAG	.	133.0	18.0	131.0	0.0	.	Atlas-SNP
UNC5A	90249	hgsc.bcm.edu	37	5	176305481	176305481	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	UNC5A-91	NM_133369	exon13	c.C2025G	p.I675M	GGAGATCCCCTTT	.	377.0	57.0	201.0	0.0	.	Atlas-SNP
DBN1	1627	hgsc.bcm.edu	37	5	176894041	176894041	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	DBN1-587	NM_080881	exon8	c.A584C	p.E195A	TCCTCCTCCTTCC	.	95.0	8.0	34.0	0.0	.	Atlas-SNP
GPANK1	7918	hgsc.bcm.edu	37	6	31630170	31630170	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	GPANK1-91	NM_001199237	exon4	c.G944A	p.R315Q	ACAGCTCGGGTAT	.	210.0	32.0	92.0	0.0	.	Atlas-SNP
STK19	8859	hgsc.bcm.edu	37	6	31940267	31940267	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	STK19-336	NM_032454	exon2	c.G409C	p.D137H	GAGTCGGATCCTC	.	38.0	8.0	44.0	0.0	.	Atlas-SNP
CENPQ	55166	hgsc.bcm.edu	37	6	49456158	49456158	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	CENPQ-92	NM_018132	exon7	c.G571T	p.E191X	GAGGTGGAAGAAG	.	176.0	31.0	228.0	0.0	.	Atlas-SNP
DST	667	hgsc.bcm.edu	37	6	56391195	56391195	+	Silent	SNP	C	C	A	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	DST-523	NM_015548	exon50	c.G10224T	p.V3408V	CTCCTCCACCTTC	.	149.0	38.0	162.0	0.0	.	Atlas-SNP
WBSCR22	114049	hgsc.bcm.edu	37	7	73101340	73101340	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	WBSCR22-90	NM_001202560	exon5	c.G277C	p.D93H	GCTGTGGACCGAG	.	80.0	4.0	61.0	0.0	.	Atlas-SNP
GPR85	54329	hgsc.bcm.edu	37	7	112724050	112724050	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	GPR85-91	NM_001146267	exon3	c.T727C	p.W243R	CTAGCCAATTGGC	.	102.0	7.0	99.0	0.0	.	Atlas-SNP
KCND2	3751	hgsc.bcm.edu	37	7	119915231	119915231	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	KCND2-517	NM_012281	exon1	c.C545T	p.T182M	CCAGCACGATGGC	.	122.0	27.0	141.0	0.0	.	Atlas-SNP
SSPO	23145	hgsc.bcm.edu	37	7	149476671	149476671	+	Missense_Mutation	SNP	T	T	C	rs201032059		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	.	NM_198455	exon10	c.T1121C	p.L374P	AGCCCCTGGGGCT	.	313.0	19.0	180.0	0.0	.	Atlas-SNP
SSPO	23145	hgsc.bcm.edu	37	7	149476672	149476672	+	Silent	SNP	G	G	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	.	NM_198455	exon10	c.G1122T	p.L374L	GCCCCTGGGGCTC	.	316.0	16.0	181.0	0.0	.	Atlas-SNP
ANLN	54443	hgsc.bcm.edu	37	7	36436004	36436006	+	In_Frame_Del	DEL	CAG	CAG	-	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	CAG	CAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	ANLN-517	NM_018685	exon2	c.147_149del	p.49_50del	.	.	103.0	25.0	138.0	0.0	.	Atlas-Indel
TPD52L3	89882	hgsc.bcm.edu	37	9	6328653	6328653	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	TPD52L3-68	NM_033516	exon1	c.G58C	p.E20Q	ACTTCTGAACTGG	.	85.0	15.0	83.0	0.0	.	Atlas-SNP
RMI1	80010	hgsc.bcm.edu	37	9	86616405	86616405	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	RMI1-90	NM_024945	exon3	c.G504C	p.L168F	AATTTTGATTTAT	.	52.0	7.0	57.0	0.0	.	Atlas-SNP
SVEP1	79987	hgsc.bcm.edu	37	9	113169657	113169657	+	Silent	SNP	A	A	G	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	SVEP1-75	NM_153366	exon38	c.T8223C	p.Y2741Y	ACAGCTATACTGC	.	177.0	29.0	118.0	0.0	.	Atlas-SNP
VPS13A	23230	hgsc.bcm.edu	37	9	79933239	79933241	+	In_Frame_Del	DEL	CTA	CTA	-	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	CTA	CTA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	VPS13A-161	NM_001018037	exon40	c.4927_4929del	p.1643_1643del	.	.	126.0	21.0	148.0	0.0	.	Atlas-Indel
MAGEE2	139599	hgsc.bcm.edu	37	X	75003782	75003782	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	MAGEE2-132	NM_138703	exon1	c.A1105C	p.I369L	CCTCAATCAGAGA	.	53.0	11.0	79.0	0.0	.	Atlas-SNP
DCAF12L1	139170	hgsc.bcm.edu	37	X	125685583	125685583	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	DCAF12L1-132	NM_178470	exon1	c.G1009A	p.D337N	GCTGGTCCTGGCG	.	180.0	11.0	223.0	0.0	.	Atlas-SNP
DCAF12L1	139170	hgsc.bcm.edu	37	X	125685622	125685622	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	DCAF12L1-132	NM_178470	exon1	c.G970A	p.G324S	GGGAGCCCACGGC	.	268.0	18.0	285.0	0.0	.	Atlas-SNP
GPC3	2719	hgsc.bcm.edu	37	X	132730533	132730535	+	In_Frame_Del	DEL	TCT	TCT	-	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	TCT	TCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	GPC3-847	NM_001164619	exon6	c.1345_1347del	p.449_449del	.	.	267.0	42.0	394.0	0.0	.	Pindel
