Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Algorithm
MUC5B	727897	hgsc.bcm.edu	37	11	1271221	1271221	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	.	NM_002458	exon31	c.A13111G	p.T4371A	AAGGCCACCACGA	.	206.0	23.0	280.0	0.0	.	Atlas-SNP
ATN1	1822	hgsc.bcm.edu	37	12	7045900	7045900	+	Silent	SNP	G	G	A	rs142238167	byfrequency	TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	ATN1-139	NM_001007026	exon5	c.G1470A	p.Q490Q	GCAGCAGCAGCAG	.	119.0	18.0	65.0	0.0	G|0.985;A|0.015	Atlas-SNP
ATN1	1822	hgsc.bcm.edu	37	12	7045924	7045924	+	Missense_Mutation	SNP	G	G	T	rs199988271	alternate_allele	TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	ATN1-139	NM_001007026	exon5	c.G1494T	p.Q498H	GCAGCAGCAGCAG	.	194.0	20.0	81.0	0.0	G|0.999;A|0.001	Atlas-SNP
DIP2B	57609	hgsc.bcm.edu	37	12	51072495	51072495	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	DIP2B-95	NM_173602	exon8	c.A950G	p.E317G	AGCCGGAGGGACG	.	240.0	25.0	136.0	0.0	.	Atlas-SNP
ANKRD34C	390616	hgsc.bcm.edu	37	15	79587017	79587017	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	.	NM_001146341	exon2	c.C1391T	p.P464L	TCCTGCCGCCTTT	.	84.0	6.0	73.0	0.0	.	Atlas-SNP
SEZ6L2	26470	hgsc.bcm.edu	37	16	29884982	29884982	+	Missense_Mutation	SNP	C	C	T	rs146085461		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	SEZ6L2-92	NM_001114100	exon11	c.G1831A	p.V611I	AGCCAACGGGGAA	.	117.0	53.0	18.0	0.0	C|1.000;T|0.000	Atlas-SNP
KRT12	3859	hgsc.bcm.edu	37	17	39021191	39021191	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	KRT12-91	NM_000223	exon3	c.G674A	p.R225H	CCCTGGCGCAGGG	.	131.0	56.0	94.0	0.0	.	Atlas-SNP
DENND4B	9909	hgsc.bcm.edu	37	1	153907287	153907287	+	Missense_Mutation	SNP	G	G	C	rs199597671		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	DENND4B-69	NM_014856	exon18	c.C2722G	p.Q908E	GCTGCTGCTGCTG	.	105.0	6.0	41.0	0.0	.	Atlas-SNP
SMTN	6525	hgsc.bcm.edu	37	22	31495743	31495743	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	SMTN-154	NM_001207018	exon18	c.C2632T	p.Q878X	GACATCCAGAACT	.	150.0	8.0	118.0	0.0	.	Atlas-SNP
TMPRSS6	164656	hgsc.bcm.edu	37	22	37462261	37462261	+	Silent	SNP	C	C	T	novel		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	TMPRSS6-292	NM_153609	exon18	c.G2295A	p.P765P	CACCAGCGGACCA	.	185.0	47.0	88.0	0.0	.	Atlas-SNP
NCOA1	8648	hgsc.bcm.edu	37	2	24951320	24951320	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	NCOA1-228	NM_003743	exon14	c.C2861T	p.A954V	ACAGAGCTCTGGG	.	64.0	27.0	64.0	0.0	.	Atlas-SNP
KIAA0368	23392	hgsc.bcm.edu	37	9	114195628	114195628	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	KIAA0368-68	NM_001080398	exon9	c.A1267G	p.I423V	CTTCTATGAATTT	.	152.0	8.0	120.0	0.0	.	Atlas-SNP
