Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Algorithm
ADD3	120	hgsc.bcm.edu	37	10	111879036	111879036	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	ADD3-157	NM_019903	exon7	c.A785G	p.Y262C	TTGCCTATTATGA	.	93.0	34.0	157.0	0.0	.	Atlas-SNP
CAPRIN1	4076	hgsc.bcm.edu	37	11	34104425	34104425	+	Splice_Site	SNP	G	G	T	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	CAPRIN1-91	NM_203364	exon8	c.879+1G>T	.	ACAGAGGTATGAT	.	51.0	21.0	151.0	0.0	.	Atlas-SNP
OR4C3	256144	hgsc.bcm.edu	37	11	48347234	48347234	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	OR4C3-69	NM_001004702	exon1	c.T742C	p.Y248H	ATCCTGTACTCCT	.	222.0	13.0	357.0	0.0	.	Atlas-SNP
MUC2	4583	hgsc.bcm.edu	37	11	1092602	1092619	+	In_Frame_Del	DEL	CCACCACTCCCAGCCCTC	CCACCACTCCCAGCCCTC	-	rs201595190		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	CCACCACTCCCAGCCCTC	CCACCACTCCCAGCCCTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	MUC2-90	NM_002457	exon30	c.4420_4437del	p.1474_1479del	.	.	163.0	25.0	255.0	0.0	.	Atlas-Indel
PDE3A	5139	hgsc.bcm.edu	37	12	20766633	20766633	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	PDE3A-94	NM_000921	exon3	c.A1268T	p.K423M	TTCCAAAGGTAGG	.	70.0	33.0	88.0	0.0	.	Atlas-SNP
KRT1	3848	hgsc.bcm.edu	37	12	53069243	53069243	+	Missense_Mutation	SNP	T	T	C	rs77846840		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	KRT1-92	NM_006121	exon9	c.A1669G	p.S557G	AGCTGCTACCTCC	.	45.0	11.0	21.0	0.0	T|0.500;C|0.500	Atlas-SNP
SUDS3	64426	hgsc.bcm.edu	37	12	118852225	118852225	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	SUDS3-90	NM_022491	exon12	c.G974T	p.R325L	GCCGGCGCTCAGC	.	53.0	4.0	52.0	0.0	.	Atlas-SNP
ASB8	140461	hgsc.bcm.edu	37	12	48543591	48543603	+	Frame_Shift_Del	DEL	GCCCCGCTCTCTA	GCCCCGCTCTCTA	-	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	GCCCCGCTCTCTA	GCCCCGCTCTCTA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	ASB8-226	NM_024095	exon4	c.414_426del	p.138_142del	.	.	118.0	40.0	132.0	0.0	.	Pindel
FAM194B	220081	hgsc.bcm.edu	37	13	46170737	46170737	+	Missense_Mutation	SNP	T	T	C	rs200764156		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	FAM194B-68	NM_182542	exon3	c.A404G	p.E135G	TCCTCCTCCAGAT	.	25.0	15.0	43.0	0.0	.	Atlas-SNP
UNC13C	440279	hgsc.bcm.edu	37	15	54307147	54307147	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	UNC13C-51	NM_001080534	exon1	c.C2047G	p.L683V	AACAGTCTTTTTG	.	83.0	10.0	128.0	0.0	.	Atlas-SNP
DSG3	1830	hgsc.bcm.edu	37	18	29049127	29049127	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	DSG3-98	NM_001944	exon12	c.G1712T	p.S571I	CAGACAGTCAGAA	.	80.0	4.0	150.0	0.0	.	Atlas-SNP
CATSPERD	257062	hgsc.bcm.edu	37	19	5744509	5744509	+	Silent	SNP	G	G	T	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	.	NM_152784	exon8	c.G645T	p.V215V	TGTAGTGAATCAA	.	82.0	5.0	103.0	0.0	.	Atlas-SNP
ZNF546	339327	hgsc.bcm.edu	37	19	40520583	40520583	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	ZNF546-155	NM_178544	exon7	c.A1406G	p.Y469C	AACCCTATGAATG	.	57.0	25.0	54.0	0.0	.	Atlas-SNP
HRC	3270	hgsc.bcm.edu	37	19	49657754	49657754	+	Silent	SNP	G	G	A	rs145933641	byfrequency	TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	HRC-91	NM_002152	exon1	c.C741T	p.D247D	ATCATCGTCATCT	.	83.0	7.0	102.0	0.0	G|0.998;A|0.002	Atlas-SNP
SSC5D	284297	hgsc.bcm.edu	37	19	56012011	56012011	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	.	NM_001144950	exon11	c.G2457A	p.R819R	GGTCCGGCCTCGA	.	176.0	11.0	178.0	0.0	.	Atlas-SNP
ZFP28	140612	hgsc.bcm.edu	37	19	57051018	57051018	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	ZFP28-91	NM_020828	exon2	c.T233C	p.L78P	CTGCTCTTCCCCA	.	129.0	66.0	88.0	0.0	.	Atlas-SNP
STIL	6491	hgsc.bcm.edu	37	1	47746485	47746485	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	STIL-659	NM_001048166	exon12	c.G1645A	p.E549K	ACTCTTCGTTTTG	.	44.0	14.0	103.0	0.0	.	Atlas-SNP
TGM6	343641	hgsc.bcm.edu	37	20	2384245	2384245	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	TGM6-94	NM_001254734	exon9	c.C1112T	p.P371L	GCGGCCCAGCCTC	.	136.0	32.0	100.0	0.0	.	Atlas-SNP
FARP2	9855	hgsc.bcm.edu	37	2	242396172	242396172	+	Silent	SNP	G	G	C	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	FARP2-93	NM_014808	exon14	c.G1422C	p.T474T	TTCCACGAAGAGT	.	197.0	181.0	238.0	1.0	.	Atlas-SNP
TMEM115	11070	hgsc.bcm.edu	37	3	50392898	50392900	+	In_Frame_Del	DEL	TCA	TCA	-	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	TCA	TCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	TMEM115-278	NM_007024	exon2	c.931_933del	p.311_311del	.	.	99.0	28.0	169.0	0.0	.	Atlas-Indel
PTPN13	5783	hgsc.bcm.edu	37	4	87643581	87643581	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	PTPN13-230	NM_080684	exon10	c.A1602C	p.K534N	AAGAAAACTGAGG	.	341.0	147.0	287.0	0.0	.	Atlas-SNP
COL25A1	84570	hgsc.bcm.edu	37	4	109861707	109861707	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	COL25A1-92	NM_198721	exon9	c.G660T	p.M220I	TCCTGGCATTCCA	.	58.0	4.0	78.0	0.0	.	Atlas-SNP
CNOT6	57472	hgsc.bcm.edu	37	5	179994980	179994980	+	Missense_Mutation	SNP	G	G	A	rs143354534	alternate_allele	TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	CNOT6-90	NM_015455	exon9	c.G1004A	p.R335Q	AACTTCGGAAGGA	.	120.0	18.0	105.0	0.0	G|1.000;T|0.000	Atlas-SNP
C6orf222	389384	hgsc.bcm.edu	37	6	36298263	36298263	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	C6orf222-93	NM_001010903	exon2	c.C205A	p.H69N	TGCAGTGAGCCTC	.	68.0	18.0	70.0	0.0	.	Atlas-SNP
COL21A1	81578	hgsc.bcm.edu	37	6	55990909	55990909	+	Silent	SNP	G	G	T	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	COL21A1-24	NM_030820	exon13	c.C1581A	p.G527G	TGGCATGCCATGA	.	135.0	28.0	185.0	0.0	.	Atlas-SNP
TIAM2	26230	hgsc.bcm.edu	37	6	155469331	155469337	+	Frame_Shift_Del	DEL	GACACGC	GACACGC	-	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	GACACGC	GACACGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	TIAM2-93	NM_012454	exon6	c.1890_1896del	p.630_632del	.	.	276.0	47.0	381.0	0.0	.	Atlas-Indel
ANKIB1	54467	hgsc.bcm.edu	37	7	92027761	92027761	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	ANKIB1-432	NM_019004	exon20	c.T2768G	p.M923R	GCCTCATGAGACT	.	189.0	95.0	163.0	0.0	.	Atlas-SNP
THAP5	168451	hgsc.bcm.edu	37	7	108205172	108205172	+	Silent	SNP	T	T	C	rs142576735		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	THAP5-68	NM_001130475	exon3	c.A651G	p.Q217Q	CAAAGATTGATGA	.	88.0	15.0	72.0	0.0	T|1.000;C|0.000	Atlas-SNP
RIPK2	8767	hgsc.bcm.edu	37	8	90777603	90777603	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	RIPK2-523	NM_003821	exon3	c.G362C	p.R121T	CATTGAGATTTCG	.	100.0	54.0	62.0	0.0	.	Atlas-SNP
EXT1	2131	hgsc.bcm.edu	37	8	118817057	118817057	+	Silent	SNP	C	C	T	rs142710059	byfrequency	TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	EXT1-660	NM_000127	exon10	c.G1959A	p.E653E	AATGTCCTCACAA	.	286.0	19.0	284.0	0.0	C|0.994;T|0.006	Atlas-SNP
NUP188	23511	hgsc.bcm.edu	37	9	131719265	131719266	+	Frame_Shift_Ins	INS	-	-	GT	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	NUP188-207	NM_015354	exon5	c.281_282insGT	p.Q94fs	.	.	119.0	49.0	206.0	0.0	.	Atlas-Indel
FOXO4	4303	hgsc.bcm.edu	37	X	70321291	70321294	+	Frame_Shift_Del	DEL	CCTC	CCTC	-	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	CCTC	CCTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	FOXO4-986	NM_005938	exon2	c.1210_1213del	p.404_405del	.	.	74.0	33.0	70.0	0.0	.	Atlas-Indel
