Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Algorithm
HEATR5A	25938	hgsc.bcm.edu	37	14	31765136	31765136	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	HEATR5A-23	NM_015473	exon34	c.T5598C	p.T1866T	CTCAAGAGTAGCT	.	82.0	24.0	53.0	0.0	.	Atlas-SNP
TTC39C	125488	hgsc.bcm.edu	37	18	21703901	21703901	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	TTC39C-91	NM_001135993	exon9	c.G1290A	p.V430V	CTCGGTGAAAAAG	.	86.0	17.0	110.0	0.0	.	Atlas-SNP
ARHGEF18	23370	hgsc.bcm.edu	37	19	7506565	7506565	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	ARHGEF18-228	NM_015318	exon3	c.C95A	p.A32D	ATGAAGCCGATTC	.	57.0	9.0	55.0	0.0	.	Atlas-SNP
IRF3	3661	hgsc.bcm.edu	37	19	50163981	50163981	+	Missense_Mutation	SNP	C	C	T	rs148672096	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	IRF3-92	NM_001197128	exon4	c.G268A	p.V90M	CCATCACGAGCCT	.	57.0	26.0	55.0	0.0	C|0.995;T|0.005	Atlas-SNP
PRAMEF11	440560	hgsc.bcm.edu	37	1	12884876	12884876	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	.	NM_001146344	exon4	c.T1235A	p.L412X	CAGAACAAGATCC	.	769.0	109.0	714.0	1.0	.	Atlas-SNP
FUCA1	2517	hgsc.bcm.edu	37	1	24186340	24186340	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	FUCA1-153	NM_000147	exon4	c.A716C	p.Y239S	TTCCAGTAAGTAT	.	87.0	14.0	86.0	0.0	.	Atlas-SNP
FLG	2312	hgsc.bcm.edu	37	1	152281825	152281825	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	FLG-106	NM_002016	exon3	c.C5537A	p.T1846N	GACGTGGTGTGGC	.	259.0	88.0	219.0	0.0	.	Atlas-SNP
RRNAD1	51093	hgsc.bcm.edu	37	1	156703253	156703253	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	RRNAD1-90	NM_015997	exon5	c.C577T	p.Q193X	AGAGCCCAGCGCC	.	58.0	6.0	52.0	0.0	.	Atlas-SNP
LHFPL4	375323	hgsc.bcm.edu	37	3	9543923	9543923	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	LHFPL4-71	NM_198560	exon4	c.G716T	p.C239F	ACGGGGCAGGGAA	.	173.0	70.0	182.0	0.0	.	Atlas-SNP
PCDHA2	56146	hgsc.bcm.edu	37	5	140174742	140174742	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	PCDHA2-94	NM_018905	exon1	c.C193T	p.R65W	CTGTTCCGGGTGG	.	67.0	5.0	56.0	0.0	.	Atlas-SNP
PCDHB10	56126	hgsc.bcm.edu	37	5	140573844	140573844	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	PCDHB10-92	NM_018930	exon1	c.C1719T	p.T573T	CTGCACCGAGCTG	.	202.0	49.0	11.0	0.0	.	Atlas-SNP
ADAMTS19	171019	hgsc.bcm.edu	37	5	128797315	128797316	+	In_Frame_Ins	INS	-	-	CCCGGC	rs142924298		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	ADAMTS19-295	NM_133638	exon2	c.594_595insCCCGGC	p.N198delinsNPG	.	.	42.0	14.0	6.0	0.0	-|0.817;CCCGGC|0.183	Pindel
MUC17	140453	hgsc.bcm.edu	37	7	100677145	100677145	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	MUC17-95	NM_001040105	exon3	c.A2448G	p.T816T	CATCACACCGGTG	.	148.0	11.0	131.0	0.0	.	Atlas-SNP
PNPLA7	375775	hgsc.bcm.edu	37	9	140414395	140414395	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	PNPLA7-91	NM_152286	exon10	c.C983A	p.P328Q	AGCCGCGGTGGCT	.	71.0	5.0	69.0	0.0	.	Atlas-SNP
TFDP3	51270	hgsc.bcm.edu	37	X	132351801	132351801	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	TFDP3-131	NM_016521	exon1	c.C487T	p.R163C	AGGTGCGCCGTTT	.	116.0	18.0	94.0	0.0	.	Atlas-SNP
