Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Algorithm
CCDC147	159686	hgsc.bcm.edu	37	10	106214282	106214282	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	CCDC147-71	NM_001008723	exon18	c.G2613A	p.T871T	AATGACGTTCTAA	.	158.0	27.0	159.0	0.0	.	Atlas-SNP
MUC6	4588	hgsc.bcm.edu	37	11	1031972	1031972	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	MUC6-23	NM_005961	exon3	c.C197T	p.T66M	TTGCACGTCCCCG	.	125.0	86.0	185.0	0.0	.	Atlas-SNP
ABCC8	6833	hgsc.bcm.edu	37	11	17485036	17485036	+	Silent	SNP	C	C	G	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	ABCC8-91	NM_000352	exon4	c.G528C	p.V176V	GAGGATCACCAGC	.	101.0	21.0	142.0	0.0	.	Atlas-SNP
OR5J2	282775	hgsc.bcm.edu	37	11	55944120	55944120	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	OR5J2-115	NM_001005492	exon1	c.C27T	p.V9V	AGTTGTCACTGAG	.	78.0	23.0	146.0	0.0	.	Atlas-SNP
OR10G9	219870	hgsc.bcm.edu	37	11	123893785	123893785	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	OR10G9-92	NM_001001953	exon1	c.C66T	p.D22D	GCTGGACGCCCCA	.	231.0	12.0	370.0	0.0	.	Atlas-SNP
LRRK2	120892	hgsc.bcm.edu	37	12	40715839	40715839	+	Nonsense_Mutation	SNP	C	C	T	rs11564176	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	LRRK2-533	NM_198578	exon36	c.C5173T	p.R1725X	TTAGAACGAGCAC	.	46.0	6.0	30.0	0.0	C|0.989;T|0.011	Atlas-SNP
MLL2	8085	hgsc.bcm.edu	37	12	49421629	49421629	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	MLL2-612	NM_003482	exon47	c.A14600G	p.Y4867C	AGGGTATAGCCAG	.	153.0	36.0	150.0	0.0	.	Atlas-SNP
OTOGL	283310	hgsc.bcm.edu	37	12	80749522	80749522	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	.	NM_173591	exon46	c.C5573G	p.T1858S	CATGCACTGATAG	.	117.0	8.0	79.0	0.0	.	Atlas-SNP
DNAH10	196385	hgsc.bcm.edu	37	12	124413963	124413963	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	DNAH10-95	NM_207437	exon70	c.C12094T	p.Q4032X	GTGGTGCAGGAGA	.	239.0	101.0	188.0	0.0	.	Atlas-SNP
AJUBA	84962	hgsc.bcm.edu	37	14	23450590	23450590	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	.	NM_032876	exon1	c.G886A	p.G296R	GGGCTCCGGCTTC	.	96.0	41.0	54.0	0.0	.	Atlas-SNP
MYEF2	50804	hgsc.bcm.edu	37	15	48460977	48460977	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	MYEF2-523	NM_016132	exon2	c.G221A	p.S74N	TTCTTACTTCCTG	.	26.0	18.0	73.0	0.0	.	Atlas-SNP
HS3ST2	9956	hgsc.bcm.edu	37	16	22826384	22826384	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	HS3ST2-516	NM_006043	exon1	c.C453G	p.D151E	CTTTGACAGGAAC	.	150.0	51.0	125.0	0.0	.	Atlas-SNP
SNX20	124460	hgsc.bcm.edu	37	16	50707759	50707759	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	SNX20-23	NM_182854	exon4	c.C509T	p.A170V	CGGATGGCGTAGA	.	30.0	6.0	18.0	0.0	.	Atlas-SNP
SLC7A6	9057	hgsc.bcm.edu	37	16	68330375	68330375	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	SLC7A6-90	NM_003983	exon9	c.T1228G	p.Y410D	CAGCTCTACCTCC	.	94.0	33.0	60.0	0.0	.	Atlas-SNP
ARHGAP44	9912	hgsc.bcm.edu	37	17	12893459	12893459	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	ARHGAP44-90	NM_014859	exon21	c.G2428T	p.E810X	GACTCGGAGGAGG	.	69.0	52.0	136.0	0.0	.	Atlas-SNP
ARHGAP44	9912	hgsc.bcm.edu	37	17	12893460	12893460	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	ARHGAP44-90	NM_014859	exon21	c.A2429C	p.E810A	ACTCGGAGGAGGA	.	70.0	53.0	135.0	0.0	.	Atlas-SNP
AOC3	8639	hgsc.bcm.edu	37	17	41008411	41008411	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	AOC3-516	NM_003734	exon4	c.C2136T	p.D712D	CTTTGACGAAGAC	.	108.0	80.0	203.0	0.0	.	Atlas-SNP
EPB41L3	23136	hgsc.bcm.edu	37	18	5397119	5397119	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	EPB41L3-95	NM_012307	exon18	c.C2779A	p.Q927K	CCTCTTGTCGCTC	.	29.0	21.0	53.0	0.0	.	Atlas-SNP
PTPRM	5797	hgsc.bcm.edu	37	18	8069961	8069961	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	PTPRM-228	NM_002845	exon8	c.C1410T	p.S470S	GGAAAGCCAAGAA	.	91.0	7.0	146.0	0.0	.	Atlas-SNP
DSG1	1828	hgsc.bcm.edu	37	18	28934939	28934939	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	DSG1-519	NM_001942	exon15	c.T2780A	p.I927N	GAGTAATCCAACC	.	161.0	102.0	344.0	1.0	.	Atlas-SNP
ASXL3	80816	hgsc.bcm.edu	37	18	31319098	31319098	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	ASXL3-49	NM_030632	exon11	c.C1730A	p.S577Y	GGTCATCTTCTCT	.	39.0	12.0	60.0	0.0	.	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	37	19	9047465	9047465	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	MUC16-566	NM_024690	exon5	c.C34166T	p.S11389L	AAATCTGAAGTGG	.	176.0	15.0	181.0	0.0	.	Atlas-SNP
ZNF585B	92285	hgsc.bcm.edu	37	19	37676152	37676152	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	ZNF585B-91	NM_152279	exon5	c.G2287T	p.V763F	GATGAACACTGAA	.	160.0	61.0	156.0	0.0	.	Atlas-SNP
ZFP36	7538	hgsc.bcm.edu	37	19	39899249	39899249	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	ZFP36-227	NM_003407	exon2	c.C909T	p.P303P	CTCTCCCGTCTTC	.	48.0	21.0	59.0	0.0	.	Atlas-SNP
IZUMO2	126123	hgsc.bcm.edu	37	19	50666417	50666417	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	IZUMO2-90	NM_152358	exon1	c.G35T	p.G12V	CCCAAGCCCGAGA	.	117.0	10.0	46.0	0.0	.	Atlas-SNP
DMAP1	55929	hgsc.bcm.edu	37	1	44685739	44685739	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	DMAP1-226	NM_001034023	exon10	c.C1102T	p.R368X	GAGCTGCGAAGCG	.	83.0	27.0	117.0	0.0	.	Atlas-SNP
IPP	3652	hgsc.bcm.edu	37	1	46165768	46165768	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	IPP-91	NM_005897	exon9	c.C1625G	p.S542C	CTGGAAGATCGAC	.	61.0	4.0	92.0	0.0	.	Atlas-SNP
PTGFR	5737	hgsc.bcm.edu	37	1	78958569	78958569	+	Silent	SNP	C	C	A	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	PTGFR-527	NM_000959	exon2	c.C141A	p.A47A	CCTTGCCATCGCC	.	84.0	60.0	139.0	0.0	.	Atlas-SNP
ITLN1	55600	hgsc.bcm.edu	37	1	160850441	160850441	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	ITLN1-96	NM_017625	exon6	c.C622T	p.P208S	CCACAGGGATCAC	.	168.0	80.0	131.0	0.0	.	Atlas-SNP
PAPPA2	60676	hgsc.bcm.edu	37	1	176564267	176564267	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	PAPPA2-548	NM_020318	exon3	c.G1527C	p.L509F	GGAATTGATCTCC	.	116.0	47.0	107.0	0.0	.	Atlas-SNP
SOX13	9580	hgsc.bcm.edu	37	1	204093978	204093978	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	SOX13-514	NM_005686	exon13	c.G1585A	p.V529M	AGCTACGTGATCC	.	210.0	90.0	210.0	0.0	.	Atlas-SNP
RFPL2	10739	hgsc.bcm.edu	37	22	32589228	32589228	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	RFPL2-91	NM_006605	exon1	c.C34A	p.L12I	GTGAAAGCCTGTT	.	107.0	61.0	227.0	0.0	.	Atlas-SNP
GPR113	165082	hgsc.bcm.edu	37	2	26540927	26540927	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	GPR113-94	NM_001145168	exon2	c.G243C	p.Q81H	CATTGTCTGGCCC	.	64.0	36.0	97.0	0.0	.	Atlas-SNP
LRRTM4	80059	hgsc.bcm.edu	37	2	77745739	77745739	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	LRRTM4-94	NM_024993	exon3	c.A1256T	p.H419L	GAAACATGCTCAT	.	36.0	8.0	77.0	0.0	.	Atlas-SNP
GAL3ST2	64090	hgsc.bcm.edu	37	2	242742905	242742905	+	Missense_Mutation	SNP	C	C	T	rs143165919		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	GAL3ST2-90	NM_022134	exon4	c.C521T	p.P174L	CCTCGCCGCGGAC	.	257.0	72.0	308.0	0.0	C|1.000;T|0.000	Atlas-SNP
NUP210	23225	hgsc.bcm.edu	37	3	13368936	13368936	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	NUP210-256	NM_024923	exon32	c.G4288C	p.D1430H	AGTCGTCTCTAGG	.	216.0	66.0	219.0	0.0	.	Atlas-SNP
CDCP1	64866	hgsc.bcm.edu	37	3	45132893	45132893	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	CDCP1-117	NM_022842	exon7	c.A1765T	p.T589S	AGAAAGTCAGGCA	.	119.0	44.0	110.0	0.0	.	Atlas-SNP
IL1RAP	3556	hgsc.bcm.edu	37	3	190321957	190321957	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	IL1RAP-91	NM_001167929	exon3	c.C105T	p.I35I	GCAAATCCAAGTG	.	168.0	30.0	130.0	0.0	.	Atlas-SNP
ZFYVE28	57732	hgsc.bcm.edu	37	4	2306391	2306391	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	ZFYVE28-93	NM_001172656	exon7	c.G1586T	p.C529F	AGAAGGCAGTTGG	.	125.0	16.0	116.0	0.0	.	Atlas-SNP
TMEM155	132332	hgsc.bcm.edu	37	4	122681582	122681582	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	TMEM155-90	NM_152399	exon6	c.C260G	p.P87R	CTCTGTGGGCTTC	.	100.0	22.0	121.0	0.0	.	Atlas-SNP
SORBS2	8470	hgsc.bcm.edu	37	4	186535995	186535995	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	SORBS2-91	NM_001270771	exon20	c.C3173T	p.S1058L	CTCAGTGACAGCT	.	91.0	10.0	96.0	0.0	.	Atlas-SNP
NLN	57486	hgsc.bcm.edu	37	5	65054536	65054536	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	NLN-90	NM_020726	exon2	c.G184C	p.E62Q	AGAACTGAGGAGC	.	194.0	65.0	168.0	0.0	.	Atlas-SNP
FSTL4	23105	hgsc.bcm.edu	37	5	132545983	132545983	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	FSTL4-91	NM_015082	exon14	c.G1616A	p.G539D	TCCACACCTATGG	.	150.0	8.0	113.0	0.0	.	Atlas-SNP
FSTL4	23105	hgsc.bcm.edu	37	5	132545984	132545984	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	FSTL4-91	NM_015082	exon14	c.G1615T	p.G539C	CCACACCTATGGA	.	149.0	8.0	112.0	0.0	.	Atlas-SNP
PCDHB8	56128	hgsc.bcm.edu	37	5	140559493	140559493	+	Silent	SNP	C	C	T	rs34866056		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	PCDHB8-131	NM_019120	exon1	c.C1878T	p.R626R	GGTGCGCACCGCC	.	144.0	11.0	7.0	0.0	.	Atlas-SNP
PCDHB12	56124	hgsc.bcm.edu	37	5	140590650	140590650	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	PCDHB12-93	NM_018932	exon1	c.G2171A	p.R724H	TCGGTCGCTGCTC	.	111.0	19.0	63.0	0.0	.	Atlas-SNP
HIVEP1	3096	hgsc.bcm.edu	37	6	12125518	12125518	+	Missense_Mutation	SNP	G	G	C	rs201245007	alternate_allele	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	HIVEP1-139	NM_002114	exon4	c.G5490C	p.L1830F	TAATTTGACAAAT	.	120.0	38.0	117.0	0.0	G|0.999;A|0.000	Atlas-SNP
HSP90AB1	3326	hgsc.bcm.edu	37	6	44217213	44217213	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	HSP90AB1-658	NM_001271970	exon3	c.A247G	p.T83A	GAACGTACCCTGA	.	96.0	8.0	100.0	0.0	.	Atlas-SNP
FNDC1	84624	hgsc.bcm.edu	37	6	159652989	159652989	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	FNDC1-138	NM_032532	exon11	c.C1445A	p.P482H	CTTCTCCCAGAGC	.	153.0	11.0	94.0	0.0	.	Atlas-SNP
SMOC2	64094	hgsc.bcm.edu	37	6	168842113	168842113	+	Silent	SNP	T	T	G	rs73270928	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	SMOC2-91	NM_001166412	exon1	c.T63G	p.A21A	GCCCGCTCAGAAG	.	77.0	22.0	12.0	0.0	T|0.654;G|0.346	Atlas-SNP
LRRC61	65999	hgsc.bcm.edu	37	7	150034045	150034045	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	LRRC61-90	NM_023942	exon2	c.C95T	p.S32F	TGGAGTCCATCCT	.	93.0	16.0	106.0	0.0	.	Atlas-SNP
CDCA2	157313	hgsc.bcm.edu	37	8	25364323	25364323	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	CDCA2-90	NM_152562	exon15	c.G2141T	p.C714F	TTTCTTGTGCTTC	.	22.0	7.0	22.0	0.0	.	Atlas-SNP
C8orf34	116328	hgsc.bcm.edu	37	8	69552682	69552682	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	C8orf34-153	NM_052958	exon8	c.C1177T	p.R393C	CAAGGCCGTCCTA	.	80.0	25.0	72.0	0.0	.	Atlas-SNP
ZCCHC6	79670	hgsc.bcm.edu	37	9	88967902	88967902	+	Silent	SNP	A	A	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	ZCCHC6-92	NM_024617	exon2	c.T213A	p.A71A	GGAAACAGCACAT	.	136.0	57.0	153.0	0.0	.	Atlas-SNP
SLC2A6	11182	hgsc.bcm.edu	37	9	136338637	136338637	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	SLC2A6-90	NM_017585	exon8	c.C1122T	p.G374G	TTCCAGGCCCGCA	.	143.0	67.0	159.0	0.0	.	Atlas-SNP
