Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Algorithm
ADARB2	105	hgsc.bcm.edu	37	10	1284298	1284298	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ADARB2-153	NM_018702	exon5	c.G1257A	p.E419E	GAGGTGCTCGCCG	.	181.0	68.0	89.0	0.0	.	Atlas-SNP
PITRM1	10531	hgsc.bcm.edu	37	10	3205972	3205972	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PITRM1-91	NM_001242309	exon6	c.A640T	p.T214S	CCCATGTAAGCTC	.	174.0	81.0	127.0	0.0	.	Atlas-SNP
SFMBT2	57713	hgsc.bcm.edu	37	10	7213881	7213881	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SFMBT2-141	NM_001029880	exon19	c.G2391A	p.P797P	GGTCGGCGGGCAC	.	39.0	21.0	19.0	0.0	.	Atlas-SNP
ITIH2	3698	hgsc.bcm.edu	37	10	7788557	7788557	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ITIH2-93	NM_002216	exon20	c.C2583T	p.G861G	GCTAGGCCAGTTC	.	226.0	101.0	202.0	0.0	.	Atlas-SNP
CUBN	8029	hgsc.bcm.edu	37	10	16930425	16930425	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CUBN-166	NM_001081	exon56	c.C8896A	p.H2966N	CTAAGTGGAAGGA	.	66.0	29.0	75.0	0.0	.	Atlas-SNP
CUBN	8029	hgsc.bcm.edu	37	10	17024637	17024637	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CUBN-166	NM_001081	exon31	c.T4541C	p.F1514S	GCCTGGAAAATCC	.	51.0	26.0	27.0	0.0	.	Atlas-SNP
CUBN	8029	hgsc.bcm.edu	37	10	17146555	17146555	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CUBN-166	NM_001081	exon12	c.T1280C	p.V427A	CAGTTGACACCTG	.	281.0	117.0	244.0	0.0	.	Atlas-SNP
MASTL	84930	hgsc.bcm.edu	37	10	27470451	27470451	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MASTL-522	NM_001172303	exon11	c.C2423T	p.A808V	ATAATGCTCAAAG	.	58.0	24.0	99.0	0.0	.	Atlas-SNP
MKX	283078	hgsc.bcm.edu	37	10	27964211	27964211	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MKX-91	NM_173576	exon7	c.T1006G	p.S336A	TATGGGACGACTT	.	102.0	39.0	62.0	0.0	.	Atlas-SNP
FZD8	8325	hgsc.bcm.edu	37	10	35929513	35929513	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FZD8-612	NM_031866	exon1	c.G845A	p.G282D	CACAGGCCGATCC	.	185.0	91.0	140.0	0.0	.	Atlas-SNP
ANKRD30A	91074	hgsc.bcm.edu	37	10	37508025	37508025	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ANKRD30A-161	NM_052997	exon34	c.G3217A	p.E1073K	GAAAAGGAAAATA	.	230.0	94.0	212.0	0.0	.	Atlas-SNP
ALOX5	240	hgsc.bcm.edu	37	10	45869760	45869760	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ALOX5-228	NM_001256154	exon1	c.C33T	p.G11G	CACTGGCAGCCAG	.	158.0	48.0	76.0	0.0	.	Atlas-SNP
MARCH8	220972	hgsc.bcm.edu	37	10	46028623	46028623	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MARCH8-68	NM_001002266	exon2	c.T37C	p.S13P	CCTGGGATGGAAT	.	117.0	50.0	79.0	0.0	.	Atlas-SNP
WDFY4	57705	hgsc.bcm.edu	37	10	49951020	49951020	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	WDFY4-22	NM_020945	exon12	c.T1886C	p.L629P	CTCTGCTCCGGAT	.	26.0	7.0	32.0	0.0	.	Atlas-SNP
WDFY4	57705	hgsc.bcm.edu	37	10	49951058	49951058	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	WDFY4-22	NM_020945	exon12	c.A1924T	p.R642X	GCCTTCAGAGTCT	.	38.0	18.0	57.0	0.0	.	Atlas-SNP
C10orf107	219621	hgsc.bcm.edu	37	10	63441022	63441022	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	C10orf107-90	NM_173554	exon2	c.T22C	p.Y8H	ATTCAGTATTCAA	.	40.0	23.0	34.0	0.0	.	Atlas-SNP
C10orf35	219738	hgsc.bcm.edu	37	10	71391540	71391540	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	C10orf35-92	NM_145306	exon3	c.A41T	p.D14V	AGGATGACGACCC	.	254.0	102.0	181.0	0.0	.	Atlas-SNP
PPA1	5464	hgsc.bcm.edu	37	10	71969033	71969033	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PPA1-153	NM_021129	exon8	c.A653T	p.D218V	ATAATATCAATGG	.	74.0	28.0	84.0	0.0	.	Atlas-SNP
ADAMTS14	140766	hgsc.bcm.edu	37	10	72434451	72434451	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ADAMTS14-232	NM_080722	exon2	c.C222T	p.P74P	GCCACCCACACTA	.	75.0	32.0	64.0	0.0	.	Atlas-SNP
CDH23	64072	hgsc.bcm.edu	37	10	73553114	73553114	+	Silent	SNP	G	G	A	rs142788731	by1000genomes	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CDH23-563	NM_022124	exon46	c.G6429A	p.T2143T	GCTAACGGTGGTG	.	196.0	85.0	147.0	0.0	G|0.999;A|0.001	Atlas-SNP
SYNPO2L	79933	hgsc.bcm.edu	37	10	75407283	75407283	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SYNPO2L-91	NM_024875	exon2	c.G1455A	p.M485I	GGGAGCCATTGGA	.	35.0	14.0	23.0	0.0	.	Atlas-SNP
SYNPO2L	79933	hgsc.bcm.edu	37	10	75408109	75408109	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SYNPO2L-91	NM_024875	exon2	c.T629C	p.V210A	GGGAGCACAGCTG	.	20.0	8.0	19.0	0.0	.	Atlas-SNP
NDST2	8509	hgsc.bcm.edu	37	10	75566103	75566103	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NDST2-91	NM_003635	exon6	c.T1378C	p.Y460H	GGGGATACTCCTC	.	92.0	40.0	61.0	0.0	.	Atlas-SNP
NDST2	8509	hgsc.bcm.edu	37	10	75567679	75567679	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NDST2-91	NM_003635	exon3	c.G468A	p.L156L	GTCTAGCAGTTCC	.	191.0	74.0	147.0	0.0	.	Atlas-SNP
DLG5	9231	hgsc.bcm.edu	37	10	79581401	79581401	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DLG5-98	NM_004747	exon15	c.G2841A	p.W947X	CTTGGGCCAGGTC	.	68.0	29.0	47.0	0.0	.	Atlas-SNP
DLG5	9231	hgsc.bcm.edu	37	10	79613277	79613277	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DLG5-98	NM_004747	exon5	c.C699T	p.L233L	ACTCAGGAGCCGG	.	41.0	14.0	29.0	0.0	.	Atlas-SNP
ANXA11	311	hgsc.bcm.edu	37	10	81927056	81927056	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ANXA11-91	NM_145869	exon7	c.G575T	p.G192V	ATGGTGCCTCGGC	.	108.0	41.0	79.0	0.0	.	Atlas-SNP
LDB3	11155	hgsc.bcm.edu	37	10	88469694	88469694	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LDB3-92	NM_001171610	exon9	c.C1133T	p.A378V	CAGTGGCCGCCTC	.	46.0	19.0	51.0	0.0	.	Atlas-SNP
BMPR1A	657	hgsc.bcm.edu	37	10	88683197	88683197	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	BMPR1A-1619	NM_004329	exon12	c.T1407A	p.D469E	CGAAGATATGCGT	.	241.0	102.0	160.0	0.0	.	Atlas-SNP
PLCE1	51196	hgsc.bcm.edu	37	10	96006241	96006241	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PLCE1-229	NM_001165979	exon7	c.C2035T	p.H679Y	TTATTGCACTTCG	.	202.0	111.0	187.0	0.0	.	Atlas-SNP
ALDH18A1	5832	hgsc.bcm.edu	37	10	97393407	97393407	+	Splice_Site	SNP	C	C	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ALDH18A1-117	NM_002860	exon7	c.559-1G>C	.	CAAAATCTAAAAG	.	130.0	64.0	86.0	0.0	.	Atlas-SNP
HPS1	3257	hgsc.bcm.edu	37	10	100202968	100202968	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HPS1-91	NM_182639	exon3	c.C30T	p.G10G	CTCTGCGCCCTCA	.	201.0	72.0	142.0	0.0	.	Atlas-SNP
ABCC2	1244	hgsc.bcm.edu	37	10	101594287	101594287	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ABCC2-91	NM_000392	exon24	c.G3409A	p.V1137I	GTATCTGTTCAGG	.	228.0	94.0	155.0	0.0	.	Atlas-SNP
PPRC1	23082	hgsc.bcm.edu	37	10	103900009	103900009	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PPRC1-227	NM_015062	exon5	c.G1744A	p.A582T	GCCCAAGCCAGCC	.	239.0	98.0	197.0	0.0	.	Atlas-SNP
SLK	9748	hgsc.bcm.edu	37	10	105750547	105750547	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLK-549	NM_014720	exon2	c.C265T	p.P89S	GATCACCCAAATA	.	83.0	35.0	88.0	0.0	.	Atlas-SNP
SORCS3	22986	hgsc.bcm.edu	37	10	106675687	106675687	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SORCS3-99	NM_014978	exon3	c.G792C	p.R264S	CAAAAGGAAGGTA	.	226.0	12.0	208.0	0.0	.	Atlas-SNP
C10orf118	55088	hgsc.bcm.edu	37	10	115891096	115891096	+	Splice_Site	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	C10orf118-92	NM_018017	exon13	c.1912-1G>T	.	ACTTTCCTGAATA	.	96.0	44.0	58.0	0.0	.	Atlas-SNP
FGFR2	2263	hgsc.bcm.edu	37	10	123324025	123324025	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FGFR2-2607	NM_023029	exon2	c.A178G	p.N60D	TGTTGTTACTGTT	.	128.0	55.0	91.0	0.0	.	Atlas-SNP
HMX2	3167	hgsc.bcm.edu	37	10	124909596	124909596	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HMX2-90	NM_005519	exon2	c.C779T	p.S260L	ACCTCTCGGCCTT	.	74.0	29.0	14.0	0.0	.	Atlas-SNP
DHX32	55760	hgsc.bcm.edu	37	10	127555708	127555708	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DHX32-290	NM_018180	exon2	c.G327A	p.Q109Q	CCCGTGCTGGTAG	.	138.0	53.0	116.0	0.0	.	Atlas-SNP
PWWP2B	170394	hgsc.bcm.edu	37	10	134219477	134219477	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PWWP2B-90	NM_001098637	exon2	c.G1473A	p.G491G	CGTGGGGGACATC	.	659.0	431.0	263.0	1.0	.	Atlas-SNP
ADAM8	101	hgsc.bcm.edu	37	10	135086884	135086884	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ADAM8-90	NM_001109	exon6	c.C447T	p.G149G	CCGTCCGCCCTCG	.	242.0	100.0	114.0	0.0	.	Atlas-SNP
UCN3	114131	hgsc.bcm.edu	37	10	5415774	5415774	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	UCN3-90	NM_053049	exon2	c.90delG	p.K30fs	.	.	98.0	48.0	75.0	0.0	.	Atlas-Indel
KIAA1217	56243	hgsc.bcm.edu	37	10	24762792	24762792	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KIAA1217-98	NM_001098500	exon7	c.1241delG	p.G414fs	.	.	98.0	38.0	72.0	0.0	.	Atlas-Indel
C10orf40	283025	hgsc.bcm.edu	37	10	61718432	61718433	+	RNA	INS	-	-	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	.	.	.	.	.	.	69.0	32.0	72.0	0.0	.	Atlas-Indel
ZNF365	22891	hgsc.bcm.edu	37	10	64159513	64159513	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF365-92	NM_014951	exon5	c.1188delT	p.A396fs	.	.	109.0	49.0	91.0	0.0	.	Atlas-Indel
DNA2	1763	hgsc.bcm.edu	37	10	70182521	70182521	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001080449	exon15	c.2336delC	p.S779fs	.	.	73.0	32.0	61.0	0.0	.	Atlas-Indel
TMEM254	80195	hgsc.bcm.edu	37	10	81838509	81838510	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001270370	exon1	c.53_54del	p.18_18del	.	.	88.0	24.0	73.0	0.0	.	Atlas-Indel
BTRC	8945	hgsc.bcm.edu	37	10	103310572	103310573	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	BTRC-659	NM_003939	exon13	c.1665_1666insC	p.E555fs	.	.	198.0	48.0	149.0	0.0	.	Atlas-Indel
ZSWIM8	23053	hgsc.bcm.edu	37	10	75560464	75560464	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001242487	exon24	c.5077delT	p.S1693fs	.	.	218.0	47.0	128.0	0.0	.	Pindel
ZMIZ1	57178	hgsc.bcm.edu	37	10	81072446	81072446	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZMIZ1-292	NM_020338	exon25	c.3143delA	p.D1048fs	.	.	220.0	64.0	159.0	0.0	.	Pindel
CNNM2	54805	hgsc.bcm.edu	37	10	104679763	104679763	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CNNM2-515	NM_017649	exon1	c.1525delA	p.T509fs	.	.	208.0	55.0	154.0	0.0	.	Pindel
DEAF1	10522	hgsc.bcm.edu	37	11	686974	686974	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DEAF1-90	NM_021008	exon5	c.C688T	p.Q230X	CCCCCTGCTTGAT	.	116.0	76.0	166.0	1.0	.	Atlas-SNP
MUC5B	727897	hgsc.bcm.edu	37	11	1253976	1253976	+	Missense_Mutation	SNP	A	A	G	rs76956995		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_002458	exon17	c.A2041G	p.S681G	CAGCTCAGCGACT	.	107.0	14.0	56.0	0.0	.	Atlas-SNP
MUC5B	727897	hgsc.bcm.edu	37	11	1253980	1253980	+	Missense_Mutation	SNP	A	A	G	rs202127660		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_002458	exon17	c.A2045G	p.D682G	TCAGCGACTGGAG	.	96.0	9.0	50.0	0.0	.	Atlas-SNP
OR52D1	390066	hgsc.bcm.edu	37	11	5510498	5510498	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	OR52D1-68	NM_001005163	exon1	c.G562A	p.A188T	GGCATTGCCCGAC	.	67.0	53.0	90.0	0.0	.	Atlas-SNP
DNHD1	144132	hgsc.bcm.edu	37	11	6566347	6566347	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DNHD1-24	NM_144666	exon21	c.C4178T	p.A1393V	TGCATGCTGTGAG	.	172.0	134.0	186.0	1.0	.	Atlas-SNP
IGSF22	283284	hgsc.bcm.edu	37	11	18728522	18728522	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	IGSF22-140	NM_173588	exon21	c.T3519A	p.N1173K	GATTTCATTCCGA	.	121.0	96.0	152.0	0.0	.	Atlas-SNP
PTPN5	84867	hgsc.bcm.edu	37	11	18765655	18765655	+	Silent	SNP	C	C	T	rs150000507	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PTPN5-229	NM_032781	exon4	c.G189A	p.S63S	GGGCGGCGAGGGA	.	42.0	26.0	69.0	0.0	C|0.999;T|0.001	Atlas-SNP
AGBL2	79841	hgsc.bcm.edu	37	11	47701524	47701524	+	Splice_Site	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	AGBL2-92	NM_024783	exon14	c.2016+1G>A	.	TTTTTACCTTCAT	.	32.0	23.0	43.0	0.0	.	Atlas-SNP
OR5M11	219487	hgsc.bcm.edu	37	11	56310506	56310506	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001005245	exon1	c.T228C	p.N76N	GGTTGCATTTGAT	.	102.0	77.0	157.0	0.0	.	Atlas-SNP
DDB1	1642	hgsc.bcm.edu	37	11	61099071	61099071	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DDB1-661	NM_001923	exon2	c.G154A	p.V52I	CTTTGACGGGCCG	.	91.0	18.0	142.0	0.0	.	Atlas-SNP
BEST1	7439	hgsc.bcm.edu	37	11	61723382	61723382	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	BEST1-90	NM_004183	exon4	c.T440A	p.V147D	CCGCAGTCTACAA	.	139.0	95.0	67.0	0.0	.	Atlas-SNP
SLC22A25	387601	hgsc.bcm.edu	37	11	62931536	62931536	+	Silent	SNP	A	A	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLC22A25-72	NM_199352	exon9	c.T1404G	p.A468A	TCCAGTAGCTCTT	.	152.0	116.0	236.0	0.0	.	Atlas-SNP
SLC22A12	116085	hgsc.bcm.edu	37	11	64368345	64368345	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLC22A12-91	NM_001276327	exon7	c.C1209T	p.A403A	CCTGGCCGCACTG	.	37.0	33.0	52.0	0.0	.	Atlas-SNP
SUV420H1	51111	hgsc.bcm.edu	37	11	67938597	67938597	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SUV420H1-228	NM_016028	exon9	c.A862T	p.T288S	ATGCTGTATCTCG	.	59.0	42.0	86.0	0.0	.	Atlas-SNP
P2RY2	5029	hgsc.bcm.edu	37	11	72945404	72945404	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	P2RY2-503	NM_176072	exon3	c.C200T	p.A67V	GGAATGCGTCCAC	.	217.0	105.0	164.0	0.0	.	Atlas-SNP
P2RY2	5029	hgsc.bcm.edu	37	11	72945486	72945486	+	Silent	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	P2RY2-503	NM_176072	exon3	c.C282A	p.A94A	CTACGCCCGCGGC	.	151.0	75.0	107.0	0.0	.	Atlas-SNP
P2RY2	5029	hgsc.bcm.edu	37	11	72945487	72945487	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	P2RY2-503	NM_176072	exon3	c.C283T	p.R95C	TACGCCCGCGGCG	.	150.0	74.0	107.0	0.0	.	Atlas-SNP
P2RY2	5029	hgsc.bcm.edu	37	11	72945489	72945489	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	P2RY2-503	NM_176072	exon3	c.C285T	p.R95R	CGCCCGCGGCGAC	.	150.0	72.0	105.0	0.0	.	Atlas-SNP
C11orf30	56946	hgsc.bcm.edu	37	11	76169377	76169377	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	C11orf30-232	NM_020193	exon5	c.G396A	p.V132V	TCCAGTGCCTGCA	.	60.0	43.0	101.0	0.0	.	Atlas-SNP
C11orf54	28970	hgsc.bcm.edu	37	11	93488407	93488407	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	C11orf54-90	NM_014039	exon6	c.A362G	p.H121R	GTGAACACAAGCC	.	72.0	53.0	98.0	0.0	.	Atlas-SNP
GPR83	10888	hgsc.bcm.edu	37	11	94134121	94134121	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GPR83-92	NM_016540	exon1	c.A293G	p.K98R	TGGTTCTTGAAGA	.	111.0	90.0	177.0	0.0	.	Atlas-SNP
SDHD	6392	hgsc.bcm.edu	37	11	111957633	111957633	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SDHD-226	NM_003002	exon1	c.G2A	p.C1Y	ACGAGATGGCGGT	.	114.0	85.0	189.0	0.0	.	Atlas-SNP
RNF214	257160	hgsc.bcm.edu	37	11	117153198	117153198	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RNF214-90	NM_001077239	exon12	c.C1791G	p.I597M	ACTTATCCAGTTG	.	83.0	60.0	152.0	0.0	.	Atlas-SNP
POU2F3	25833	hgsc.bcm.edu	37	11	120180235	120180235	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	POU2F3-92	NM_014352	exon10	c.G1008A	p.E336E	AAAGGAGAAGCGA	.	110.0	69.0	158.0	0.0	.	Atlas-SNP
TECTA	7007	hgsc.bcm.edu	37	11	121016701	121016701	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TECTA-225	NM_005422	exon11	c.C3981T	p.C1327C	GAACTGCCTGTTT	.	64.0	38.0	96.0	0.0	.	Atlas-SNP
NFRKB	4798	hgsc.bcm.edu	37	11	129754659	129754659	+	Silent	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NFRKB-93	NM_001143835	exon7	c.C723G	p.T241T	ATCCGTGGTTGAA	.	48.0	36.0	80.0	0.0	.	Atlas-SNP
GLB1L3	112937	hgsc.bcm.edu	37	11	134147638	134147638	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GLB1L3-69	NM_001080407	exon3	c.C194T	p.S65F	ATCGATCTGTGGG	.	59.0	47.0	107.0	0.0	.	Atlas-SNP
GLB1L2	89944	hgsc.bcm.edu	37	11	134240273	134240273	+	Missense_Mutation	SNP	G	G	A	rs202239114		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GLB1L2-25	NM_138342	exon12	c.G1195A	p.A399T	TGGGACGCCCTCA	.	102.0	81.0	130.0	0.0	G|0.999;A|0.001	Atlas-SNP
CCDC73	493860	hgsc.bcm.edu	37	11	32635951	32635951	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CCDC73-91	NM_001008391	exon16	c.1914delA	p.E638fs	.	.	58.0	45.0	68.0	0.0	.	Atlas-Indel
NRXN2	9379	hgsc.bcm.edu	37	11	64421196	64421197	+	Splice_Site	INS	-	-	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NRXN2-232	NM_015080	exon13	c.2390-2->C	.	.	.	57.0	40.0	122.0	0.0	.	Atlas-Indel
TCIRG1	10312	hgsc.bcm.edu	37	11	67817504	67817504	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TCIRG1-227	NM_006019	exon17	c.2088delA	p.A696fs	.	.	59.0	35.0	77.0	0.0	.	Atlas-Indel
C11orf57	55216	hgsc.bcm.edu	37	11	111953575	111953578	+	Frame_Shift_Del	DEL	AGAG	AGAG	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	AGAG	AGAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	C11orf57-155	NM_001082970	exon6	c.757_760del	p.253_254del	.	.	31.0	23.0	41.0	0.0	.	Atlas-Indel
MEN1	4221	hgsc.bcm.edu	37	11	64572093	64572093	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MEN1-3017	NM_130800	exon10	c.1562delG	p.R521fs	.	.	25.0	14.0	22.0	0.0	.	Pindel
PHRF1	57661	hgsc.bcm.edu	37	11	608624	608625	+	Frame_Shift_Ins	INS	-	-	GACCGCTCCAG	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PHRF1-22	NM_020901	exon14	c.3165_3166insGACCGCTCCAG	p.S1055fs	.	.	69.0	22.0	137.0	0.0	.	Pindel
KDM5A	5927	hgsc.bcm.edu	37	12	431710	431710	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KDM5A-227	NM_001042603	exon17	c.C2299T	p.L767L	CTTCCAGCATTAC	.	11.0	11.0	22.0	0.0	.	Atlas-SNP
FGF23	8074	hgsc.bcm.edu	37	12	4479600	4479600	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FGF23-660	NM_020638	exon3	c.A665G	p.D222G	AATGGGTCACTGG	.	85.0	69.0	79.0	0.0	.	Atlas-SNP
GNB3	2784	hgsc.bcm.edu	37	12	6954905	6954905	+	Silent	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GNB3-227	NM_002075	exon10	c.A855T	p.L285L	CCTACTATTCGCT	.	125.0	95.0	134.0	0.0	.	Atlas-SNP
RIMKLB	57494	hgsc.bcm.edu	37	12	8926136	8926136	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_020734	exon7	c.T917C	p.L306P	CCTCCCTTCTACC	.	96.0	75.0	118.0	0.0	.	Atlas-SNP
KLRC4-KLRK1	0	hgsc.bcm.edu	37	12	10532370	10532370	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001199805	exon9	c.G170A	p.C57Y	ATGAAGCAGCAGA	.	48.0	40.0	90.0	0.0	.	Atlas-SNP
CSDA	8531	hgsc.bcm.edu	37	12	10856704	10856704	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CSDA-586	NM_001145426	exon6	c.C617T	p.A206V	AGTTGTGCTCCCT	.	96.0	65.0	123.0	0.0	.	Atlas-SNP
MANSC1	54682	hgsc.bcm.edu	37	12	12483292	12483292	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MANSC1-90	NM_018050	exon4	c.T965G	p.F322C	TCTGTAAACGGTA	.	79.0	63.0	144.0	0.0	.	Atlas-SNP
LOH12CR1	118426	hgsc.bcm.edu	37	12	12510415	12510415	+	Missense_Mutation	SNP	G	G	C	rs151180790	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LOH12CR1-91	NM_058169	exon1	c.G30C	p.E10D	GGCCGAGAGCCGA	.	161.0	107.0	215.0	1.0	G|1.000;A|0.000	Atlas-SNP
EMP1	2012	hgsc.bcm.edu	37	12	13367530	13367530	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	EMP1-90	NM_001423	exon5	c.C379T	p.Q127X	GGAACGCAGTATC	.	108.0	85.0	139.0	1.0	.	Atlas-SNP
SOX5	6660	hgsc.bcm.edu	37	12	23818387	23818387	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SOX5-655	NM_152989	exon10	c.G883A	p.A295T	ATCCAGCCTTATA	.	42.0	33.0	66.0	0.0	.	Atlas-SNP
FAR2	55711	hgsc.bcm.edu	37	12	29446360	29446360	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FAR2-90	NM_001271784	exon2	c.A26G	p.N9S	GTACAAACATAAT	.	80.0	34.0	72.0	0.0	.	Atlas-SNP
PKP2	5318	hgsc.bcm.edu	37	12	32996207	32996207	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PKP2-92	NM_004572	exon6	c.C1419T	p.G473G	CACCGCGCCCGGC	.	44.0	19.0	35.0	0.0	.	Atlas-SNP
SLC38A1	81539	hgsc.bcm.edu	37	12	46591521	46591521	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLC38A1-518	NM_001077484	exon16	c.A1344T	p.K448N	AGTTCCTTTATCT	.	82.0	41.0	79.0	0.0	.	Atlas-SNP
SLC38A2	54407	hgsc.bcm.edu	37	12	46756130	46756130	+	Silent	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLC38A2-226	NM_018976	exon15	c.T1359A	p.L453L	AGAAGGAAGAATA	.	125.0	45.0	103.0	0.0	.	Atlas-SNP
COL2A1	1280	hgsc.bcm.edu	37	12	48383041	48383041	+	Silent	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	COL2A1-92	NM_033150	exon17	c.T885A	p.G295G	GCCAGGACCACCA	.	127.0	46.0	105.0	0.0	.	Atlas-SNP
MLL2	8085	hgsc.bcm.edu	37	12	49416426	49416426	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MLL2-612	NM_003482	exon51	c.A16285G	p.T5429A	TGATGGTGCCAAT	.	297.0	34.0	236.0	0.0	.	Atlas-SNP
MLL2	8085	hgsc.bcm.edu	37	12	49437705	49437705	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MLL2-612	NM_003482	exon22	c.G5265A	p.Q1755Q	TCGCCGCTGTTGC	.	212.0	92.0	161.0	0.0	.	Atlas-SNP
LMBR1L	55716	hgsc.bcm.edu	37	12	49491821	49491821	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LMBR1L-227	NM_018113	exon16	c.G1308A	p.V436V	GAGGAACACAATG	.	150.0	48.0	95.0	0.0	.	Atlas-SNP
FAM186A	121006	hgsc.bcm.edu	37	12	50725578	50725578	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FAM186A-68	NM_001145475	exon6	c.T6723C	p.L2241L	TTGACTAAGATTC	.	62.0	24.0	45.0	0.0	.	Atlas-SNP
LARP4	113251	hgsc.bcm.edu	37	12	50867901	50867901	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LARP4-91	NM_052879	exon15	c.C1787T	p.A596V	GTACTGCTTCACC	.	205.0	81.0	149.0	0.0	.	Atlas-SNP
ESPL1	9700	hgsc.bcm.edu	37	12	53673526	53673526	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ESPL1-228	NM_012291	exon12	c.C2375T	p.A792V	TGCAGGCTCTGGA	.	71.0	28.0	37.0	0.0	.	Atlas-SNP
OR9K2	441639	hgsc.bcm.edu	37	12	55523992	55523992	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	OR9K2-69	NM_001005243	exon1	c.G440A	p.R147H	ATGACCGCTTTAT	.	86.0	32.0	108.0	0.0	.	Atlas-SNP
SUOX	6821	hgsc.bcm.edu	37	12	56397807	56397807	+	Missense_Mutation	SNP	C	C	T	rs76442086		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SUOX-90	NM_000456	exon6	c.C634T	p.P212S	CCCAACCCTATCT	.	241.0	94.0	209.0	0.0	.	Atlas-SNP
ANKRD52	283373	hgsc.bcm.edu	37	12	56638934	56638934	+	Silent	SNP	C	C	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ANKRD52-70	NM_173595	exon22	c.G2445C	p.P815P	CGAAAACGGGCTG	.	197.0	85.0	146.0	0.0	.	Atlas-SNP
CS	1431	hgsc.bcm.edu	37	12	56676360	56676360	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CS-226	NM_004077	exon6	c.G432C	p.R144S	AGCTGCCCTCTTT	.	249.0	93.0	205.0	0.0	.	Atlas-SNP
BAZ2A	11176	hgsc.bcm.edu	37	12	56994876	56994876	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	BAZ2A-22	NM_013449	exon22	c.G4307A	p.C1436Y	CCTGAGCACATCT	.	213.0	99.0	159.0	0.0	.	Atlas-SNP
NACA	4666	hgsc.bcm.edu	37	12	57113354	57113354	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NACA-254	NM_001113203	exon4	c.G1831A	p.D611N	CAGGGTCAGCACT	.	60.0	32.0	48.0	0.0	.	Atlas-SNP
HSD17B6	8630	hgsc.bcm.edu	37	12	57167811	57167811	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HSD17B6-92	NM_003725	exon2	c.G175A	p.A59T	CTGGCTGCGTGTC	.	220.0	102.0	165.0	0.0	.	Atlas-SNP
ZBTB39	9880	hgsc.bcm.edu	37	12	57397418	57397418	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZBTB39-135	NM_014830	exon2	c.C1284T	p.I428I	GACAATGATGTTG	.	94.0	47.0	72.0	0.0	.	Atlas-SNP
STAT6	6778	hgsc.bcm.edu	37	12	57493582	57493582	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	STAT6-849	NM_001178078	exon15	c.T1712C	p.I571T	ATGGTGATGCCCC	.	279.0	136.0	191.0	0.0	.	Atlas-SNP
LRP1	4035	hgsc.bcm.edu	37	12	57579466	57579466	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LRP1-596	NM_002332	exon41	c.C6616T	p.R2206C	TCAGAGCGCACCA	.	137.0	70.0	50.0	0.0	.	Atlas-SNP
USP15	9958	hgsc.bcm.edu	37	12	62783220	62783220	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	USP15-1084	NM_006313	exon11	c.G1396A	p.V466I	AAAGTGGTTGTCC	.	32.0	15.0	30.0	0.0	.	Atlas-SNP
CAND1	55832	hgsc.bcm.edu	37	12	67696266	67696266	+	Silent	SNP	G	G	A	rs144692083	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CAND1-516	NM_018448	exon8	c.G1164A	p.E388E	TGAAGAGAATGTA	.	136.0	60.0	137.0	0.0	G|1.000;C|0.000	Atlas-SNP
DYRK2	8445	hgsc.bcm.edu	37	12	68051174	68051174	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DYRK2-861	NM_003583	exon2	c.T268A	p.Y90N	AAGCAATACATGC	.	82.0	40.0	63.0	0.0	.	Atlas-SNP
NAV3	89795	hgsc.bcm.edu	37	12	78334110	78334110	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NAV3-279	NM_014903	exon2	c.C255G	p.D85E	CACTGACTGGGCC	.	118.0	56.0	87.0	0.0	.	Atlas-SNP
OTOGL	283310	hgsc.bcm.edu	37	12	80658922	80658922	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_173591	exon19	c.C2129T	p.A710V	CTCTTGCCCACTA	.	122.0	48.0	95.0	0.0	.	Atlas-SNP
OTOGL	283310	hgsc.bcm.edu	37	12	80665446	80665446	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_173591	exon23	c.G2510A	p.G837E	CAGAGGGAAAAGA	.	179.0	83.0	141.0	0.0	.	Atlas-SNP
METTL25	84190	hgsc.bcm.edu	37	12	82780603	82780603	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_032230	exon2	c.T281C	p.I94T	CCAAAATATTTTG	.	41.0	14.0	21.0	0.0	.	Atlas-SNP
NUDT4	11163	hgsc.bcm.edu	37	12	93793069	93793069	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NUDT4-90	NM_019094	exon5	c.A457T	p.N153Y	AATGGAAATTCTA	.	313.0	38.0	230.0	0.0	.	Atlas-SNP
CCDC41	51134	hgsc.bcm.edu	37	12	94725525	94725525	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CCDC41-90	NM_016122	exon14	c.A1658G	p.Y553C	TGATTGTACTTTT	.	84.0	26.0	71.0	0.0	.	Atlas-SNP
UBE3B	89910	hgsc.bcm.edu	37	12	109959270	109959270	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	UBE3B-660	NM_130466	exon21	c.T2278C	p.Y760H	AGGCTGTACCCCT	.	133.0	64.0	145.0	0.0	.	Atlas-SNP
MMAB	326625	hgsc.bcm.edu	37	12	109998890	109998890	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MMAB-90	NM_052845	exon7	c.C539T	p.S180L	AGCGCCGAGCTGA	.	117.0	57.0	92.0	0.0	.	Atlas-SNP
TRPV4	59341	hgsc.bcm.edu	37	12	110221440	110221440	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TRPV4-94	NM_021625	exon16	c.G2602A	p.D868N	GGGCGTCATCAGT	.	77.0	7.0	70.0	0.0	.	Atlas-SNP
ACAD10	80724	hgsc.bcm.edu	37	12	112171864	112171864	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ACAD10-92	NM_025247	exon11	c.T1532C	p.V511A	TTCCCGTGCTGAG	.	98.0	36.0	69.0	0.0	.	Atlas-SNP
KDM2B	84678	hgsc.bcm.edu	37	12	121868110	121868110	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KDM2B-638	NM_032590	exon23	c.T3992C	p.L1331P	TGCAGGAGTTTTT	.	57.0	27.0	55.0	0.0	.	Atlas-SNP
SETD1B	23067	hgsc.bcm.edu	37	12	122248666	122248666	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SETD1B-86	NM_015048	exon5	c.G1815A	p.G605G	TGCTGGGCTTCTG	.	157.0	76.0	106.0	0.0	.	Atlas-SNP
VPS33A	65082	hgsc.bcm.edu	37	12	122717402	122717402	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	VPS33A-91	NM_022916	exon12	c.C1554T	p.L518L	CCCTGGGAGGATG	.	161.0	80.0	126.0	0.0	.	Atlas-SNP
MPHOSPH9	10198	hgsc.bcm.edu	37	12	123679054	123679054	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MPHOSPH9-514	NM_022782	exon9	c.A1664G	p.D555G	GTATTGTCTTTTT	.	84.0	33.0	82.0	0.0	.	Atlas-SNP
AACS	65985	hgsc.bcm.edu	37	12	125550233	125550233	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	AACS-92	NM_023928	exon1	c.G103C	p.A35P	CGGGCGGCTGTGG	.	145.0	44.0	68.0	0.0	.	Atlas-SNP
ULK1	8408	hgsc.bcm.edu	37	12	132401137	132401137	+	Splice_Site	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ULK1-758	NM_003565	exon20	c.2072+1G>T	.	TGGCCGGTGAGTT	.	19.0	10.0	10.0	0.0	.	Atlas-SNP
PCED1B	91523	hgsc.bcm.edu	37	12	47629462	47629462	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_138371	exon2	c.615delT	p.R205fs	.	.	90.0	32.0	68.0	0.0	.	Atlas-Indel
WNT1	7471	hgsc.bcm.edu	37	12	49375164	49375164	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	WNT1-1083	NM_005430	exon4	c.853delT	p.S285fs	.	.	132.0	58.0	34.0	0.0	.	Atlas-Indel
DGKA	1606	hgsc.bcm.edu	37	12	56347513	56347514	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DGKA-255	NM_001345	exon24	c.2169_2170insC	p.P723fs	.	.	132.0	53.0	93.0	0.0	.	Atlas-Indel
ANKRD52	283373	hgsc.bcm.edu	37	12	56638929	56638930	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ANKRD52-70	NM_173595	exon22	c.2450_2451insG	p.S817fs	.	.	205.0	84.0	154.0	0.0	.	Atlas-Indel
GRIP1	23426	hgsc.bcm.edu	37	12	66788074	66788074	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GRIP1-494	NM_001178074	exon16	c.1888delC	p.P630fs	.	.	71.0	29.0	62.0	0.0	.	Atlas-Indel
PPP1R12A	4659	hgsc.bcm.edu	37	12	80201041	80201042	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PPP1R12A-273	NM_001244990	exon13	c.1620_1621insA	p.N540fs	.	.	28.0	12.0	16.0	0.0	.	Atlas-Indel
COL2A1	1280	hgsc.bcm.edu	37	12	48391429	48391429	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	COL2A1-92	NM_001844	exon7	c.492delT	p.P164fs	.	.	145.0	41.0	97.0	0.0	.	Pindel
FLT1	2321	hgsc.bcm.edu	37	13	28883025	28883025	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FLT1-1406	NM_002019	exon28	c.C3675T	p.I1225I	GGTTTTGATTCTT	.	72.0	53.0	100.0	0.0	.	Atlas-SNP
PDS5B	23047	hgsc.bcm.edu	37	13	33338706	33338706	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PDS5B-94	NM_015032	exon31	c.A3598C	p.K1200Q	AGTGACAAGAGAG	.	45.0	34.0	118.0	0.0	.	Atlas-SNP
FREM2	341640	hgsc.bcm.edu	37	13	39262894	39262894	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FREM2-100	NM_207361	exon1	c.C1413T	p.S471S	CATCAGCGATGAG	.	69.0	62.0	82.0	0.0	.	Atlas-SNP
MLNR	2862	hgsc.bcm.edu	37	13	49796459	49796459	+	Silent	SNP	A	A	T	rs202143577	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MLNR-90	NM_001507	exon2	c.A1185T	p.G395G	CACTGGAGGAGAC	.	44.0	38.0	74.0	0.0	.	Atlas-SNP
KPNA3	3839	hgsc.bcm.edu	37	13	50283733	50283733	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KPNA3-226	NM_002267	exon12	c.C1007A	p.S336X	GGGTGTGATAAGA	.	65.0	4.0	101.0	0.0	.	Atlas-SNP
MYCBP2	23077	hgsc.bcm.edu	37	13	77780870	77780870	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MYCBP2-236	NM_015057	exon24	c.T3507C	p.C1169C	GATACTACATCTG	.	94.0	72.0	87.0	0.0	.	Atlas-SNP
FARP1	10160	hgsc.bcm.edu	37	13	99083455	99083455	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FARP1-290	NM_005766	exon18	c.G2064A	p.R688R	GCACCGGCTCATG	.	147.0	105.0	187.0	0.0	.	Atlas-SNP
FARP1	10160	hgsc.bcm.edu	37	13	99100570	99100570	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FARP1-290	NM_005766	exon27	c.G3137C	p.X1046S	TGTATTGATGGCC	.	148.0	115.0	208.0	0.0	.	Atlas-SNP
TPP2	7174	hgsc.bcm.edu	37	13	103288650	103288650	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TPP2-92	NM_003291	exon13	c.A1586G	p.N529S	TTGGAAATAACCG	.	95.0	76.0	176.0	0.0	.	Atlas-SNP
CCDC168	643677	hgsc.bcm.edu	37	13	103399586	103399586	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001146197	exon4	c.A3461G	p.Y1154C	CTGCTATACATTC	.	29.0	24.0	46.0	0.0	.	Atlas-SNP
CDC16	8881	hgsc.bcm.edu	37	13	115030673	115030673	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CDC16-226	NM_001078645	exon17	c.C1561T	p.H521Y	CTTGGTCATTGCA	.	98.0	78.0	151.0	1.0	.	Atlas-SNP
UPF3A	65110	hgsc.bcm.edu	37	13	115057211	115057211	+	Nonsense_Mutation	DEL	A	A	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	UPF3A-91	NM_080687	exon6	c.690delC	p.C230X	.	.	39.0	28.0	54.0	0.0	.	Atlas-Indel
OR4K15	81127	hgsc.bcm.edu	37	14	20444355	20444355	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	OR4K15-69	NM_001005486	exon1	c.T678A	p.D226E	TGCAGATAGTGGC	.	126.0	60.0	122.0	0.0	.	Atlas-SNP
OR11G2	390439	hgsc.bcm.edu	37	14	20666484	20666484	+	Silent	SNP	T	T	C	rs200553632	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	OR11G2-70	NM_001005503	exon1	c.T990C	p.L330L	TAGTCTTAGGAAC	.	75.0	38.0	49.0	0.0	T|0.999;G|0.000	Atlas-SNP
APEX1	328	hgsc.bcm.edu	37	14	20924074	20924074	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	APEX1-661	NM_080648	exon3	c.G60A	p.E20E	TATAGAGCCAGAG	.	26.0	12.0	18.0	0.0	.	Atlas-SNP
OR6S1	341799	hgsc.bcm.edu	37	14	21109455	21109455	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	OR6S1-70	NM_001001968	exon1	c.G396A	p.L132L	GTAGCGCAGAGGA	.	258.0	106.0	199.0	0.0	.	Atlas-SNP
HAUS4	54930	hgsc.bcm.edu	37	14	23415765	23415765	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HAUS4-91	NM_017815	exon10	c.C1061T	p.A354V	TGGAGGGCCCACC	.	120.0	51.0	91.0	0.0	.	Atlas-SNP
PSMB5	5693	hgsc.bcm.edu	37	14	23504062	23504062	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PSMB5-91	NM_001144932	exon1	c.C29T	p.P10L	GGTAGCGGTCTCT	.	82.0	45.0	80.0	0.0	.	Atlas-SNP
BCL2L2-PABPN1	100529063	hgsc.bcm.edu	37	14	23777326	23777326	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001199864	exon3	c.C350T	p.P117L	TGGAACCACTGGT	.	96.0	37.0	91.0	0.0	.	Atlas-SNP
MYH6	4624	hgsc.bcm.edu	37	14	23872558	23872558	+	Silent	SNP	C	C	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MYH6-94	NM_002471	exon10	c.G897C	p.L299L	TTCACCCAGCAAC	.	101.0	44.0	86.0	0.0	.	Atlas-SNP
TGM1	7051	hgsc.bcm.edu	37	14	24718579	24718579	+	Silent	SNP	G	G	A	rs201811993		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TGM1-91	NM_000359	exon15	c.C2394T	p.D798D	TCCAGCGTCTGAG	.	104.0	54.0	63.0	0.0	G|0.999;A|0.000	Atlas-SNP
ADCY4	196883	hgsc.bcm.edu	37	14	24801000	24801000	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ADCY4-93	NM_001198592	exon5	c.G663A	p.K221K	CTGGTGCTTCTTC	.	118.0	44.0	64.0	0.0	.	Atlas-SNP
PPP2R3C	55012	hgsc.bcm.edu	37	14	35585883	35585883	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PPP2R3C-227	NM_017917	exon2	c.C119G	p.S40C	CATTCGGAGTAAT	.	41.0	9.0	26.0	0.0	.	Atlas-SNP
FANCM	57697	hgsc.bcm.edu	37	14	45644600	45644600	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FANCM-569	NM_020937	exon14	c.C2643T	p.D881D	TAATGACAGAAAT	.	37.0	13.0	40.0	0.0	.	Atlas-SNP
FRMD6	122786	hgsc.bcm.edu	37	14	52182163	52182163	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FRMD6-524	NM_152330	exon10	c.T946C	p.Y316H	CGCCTCTATATGA	.	88.0	41.0	79.0	0.0	.	Atlas-SNP
KTN1	3895	hgsc.bcm.edu	37	14	56103915	56103915	+	Splice_Site	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KTN1-1147	NM_001079521	exon11	c.1550-1G>A	.	ATTACAGATTTAC	.	202.0	79.0	169.0	0.0	.	Atlas-SNP
SYNE2	23224	hgsc.bcm.edu	37	14	64644145	64644145	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SYNE2-164	NM_015180	exon96	c.G17500A	p.E5834K	CAAAGTGAAGATC	.	209.0	91.0	180.0	0.0	.	Atlas-SNP
HSPA2	3306	hgsc.bcm.edu	37	14	65009141	65009141	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HSPA2-226	NM_021979	exon1	c.C1574T	p.A525V	AGGAGGCGGAGCG	.	151.0	61.0	125.0	0.0	.	Atlas-SNP
SPTB	6710	hgsc.bcm.edu	37	14	65249147	65249147	+	Nonsense_Mutation	SNP	G	G	T	rs200559187	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SPTB-100	NM_001024858	exon19	c.C4127A	p.S1376X	GCAGCCGAGAGGT	.	148.0	77.0	74.0	0.0	G|0.999;A|0.000	Atlas-SNP
SPTB	6710	hgsc.bcm.edu	37	14	65263322	65263322	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SPTB-100	NM_001024858	exon10	c.G1294A	p.A432T	TCATTGCGGCCTT	.	101.0	44.0	73.0	0.0	.	Atlas-SNP
TMED10	10972	hgsc.bcm.edu	37	14	75643179	75643179	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TMED10-90	NM_006827	exon1	c.A104G	p.H35R	GGCAGATGGAAGG	.	417.0	139.0	296.0	0.0	.	Atlas-SNP
TSHR	7253	hgsc.bcm.edu	37	14	81557476	81557476	+	Silent	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TSHR-1650	NM_000369	exon5	c.A456T	p.I152I	TGATATATTCTTT	.	34.0	18.0	48.0	0.0	.	Atlas-SNP
SLC24A4	123041	hgsc.bcm.edu	37	14	92792243	92792243	+	Silent	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLC24A4-93	NM_153646	exon2	c.C162A	p.V54V	ACGTGTCCTGCCA	.	98.0	41.0	96.0	0.0	.	Atlas-SNP
SLC24A4	123041	hgsc.bcm.edu	37	14	92909757	92909757	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLC24A4-93	NM_153646	exon7	c.C596T	p.T199M	GTCTGACGTGGTG	.	148.0	64.0	110.0	0.0	.	Atlas-SNP
GOLGA5	9950	hgsc.bcm.edu	37	14	93277940	93277940	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GOLGA5-677	NM_005113	exon6	c.G1161A	p.Q387Q	ACGTCAGAATTTA	.	364.0	145.0	314.0	1.0	.	Atlas-SNP
UNC79	57578	hgsc.bcm.edu	37	14	93954014	93954014	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_020818	exon5	c.T94C	p.S32P	GTGGGCTCCTCAA	.	81.0	30.0	72.0	0.0	.	Atlas-SNP
SERPINA6	866	hgsc.bcm.edu	37	14	94772527	94772527	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SERPINA6-653	NM_001756	exon4	c.A913G	p.T305A	AGATGGTGACCTT	.	132.0	69.0	102.0	0.0	.	Atlas-SNP
SERPINA3	12	hgsc.bcm.edu	37	14	95088767	95088767	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SERPINA3-653	NM_001085	exon4	c.C1007T	p.A336V	AGGAAGCCTTCAC	.	128.0	52.0	90.0	0.0	.	Atlas-SNP
BCL11B	64919	hgsc.bcm.edu	37	14	99641025	99641025	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	BCL11B-1147	NM_138576	exon4	c.G2148A	p.A716A	CGACGCCGCGTAG	.	119.0	48.0	29.0	0.0	.	Atlas-SNP
DYNC1H1	1778	hgsc.bcm.edu	37	14	102476260	102476260	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DYNC1H1-98	NM_001376	exon30	c.C6058T	p.P2020S	ATGAACCCTGGCT	.	166.0	75.0	146.0	0.0	.	Atlas-SNP
DYNC1H1	1778	hgsc.bcm.edu	37	14	102516785	102516785	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DYNC1H1-98	NM_001376	exon78	c.T13826A	p.V4609D	TACCTGTCTACCT	.	138.0	65.0	115.0	0.0	.	Atlas-SNP
CINP	51550	hgsc.bcm.edu	37	14	102816363	102816363	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CINP-178	NM_032630	exon4	c.A329T	p.E110V	AGCTTTTCCATTT	.	109.0	54.0	88.0	0.0	.	Atlas-SNP
TECPR2	9895	hgsc.bcm.edu	37	14	102931570	102931570	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TECPR2-92	NM_014844	exon17	c.C3733T	p.P1245S	ACTCAGCCTCTCA	.	179.0	79.0	142.0	0.0	.	Atlas-SNP
TRMT61A	115708	hgsc.bcm.edu	37	14	103999082	103999082	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TRMT61A-90	NM_152307	exon3	c.C495T	p.C165C	CGTGTGCCGCAGT	.	256.0	124.0	96.0	0.0	.	Atlas-SNP
PPP1R13B	23368	hgsc.bcm.edu	37	14	104206356	104206356	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PPP1R13B-227	NM_015316	exon12	c.C2397T	p.P799P	TGGTTCGGGGGAA	.	70.0	23.0	42.0	0.0	.	Atlas-SNP
CEP170B	283638	hgsc.bcm.edu	37	14	105350368	105350368	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_015005	exon8	c.C1042T	p.R348C	AAGAAGCGCTCCC	.	164.0	65.0	89.0	0.0	.	Atlas-SNP
CEP170B	283638	hgsc.bcm.edu	37	14	105352726	105352726	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_015005	exon11	c.G1940A	p.S647N	CAGAGAGCAGCAG	.	185.0	72.0	56.0	0.0	.	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	37	14	105416057	105416057	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	AHNAK2-47	NM_138420	exon7	c.A5731G	p.M1911V	TGGGCATATCCAC	.	270.0	116.0	190.0	0.0	.	Atlas-SNP
TMEM121	80757	hgsc.bcm.edu	37	14	105995324	105995324	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TMEM121-90	NM_025268	exon2	c.C153T	p.C51C	CGTGTGCTTCCTG	.	156.0	65.0	32.0	0.0	.	Atlas-SNP
OR5AU1	390445	hgsc.bcm.edu	37	14	21623596	21623597	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	OR5AU1-68	NM_001004731	exon1	c.589_590insT	p.V197fs	.	.	125.0	54.0	82.0	0.0	.	Atlas-Indel
JPH4	84502	hgsc.bcm.edu	37	14	24040435	24040436	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	JPH4-92	NM_001146028	exon5	c.1505_1506insG	p.A502fs	.	.	119.0	32.0	96.0	0.0	.	Atlas-Indel
ADAM21	8747	hgsc.bcm.edu	37	14	70926261	70926261	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ADAM21-92	NM_003813	exon2	c.2044delG	p.V682fs	.	.	367.0	148.0	234.0	0.0	.	Atlas-Indel
DIO2	1734	hgsc.bcm.edu	37	14	80677760	80677760	+	Frame_Shift_Del	DEL	A	A	-	rs148778534		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DIO2-22	NM_001242503	exon1	c.57delC	p.F19fs	.	.	90.0	15.0	65.0	0.0	.	Atlas-Indel
SMEK1	55671	hgsc.bcm.edu	37	14	91927933	91927933	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SMEK1-226	NM_032560	exon15	c.2145delG	p.K715fs	.	.	100.0	38.0	88.0	0.0	.	Atlas-Indel
BCL11B	64919	hgsc.bcm.edu	37	14	99697775	99697775	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	BCL11B-1147	NM_138576	exon3	c.548delT	p.L183fs	.	.	182.0	57.0	37.0	0.0	.	Atlas-Indel
ZNF839	55778	hgsc.bcm.edu	37	14	102807679	102807680	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF839-91	NM_001267828	exon8	c.1598_1599del	p.533_533del	.	.	271.0	86.0	188.0	0.0	.	Atlas-Indel
INF2	64423	hgsc.bcm.edu	37	14	105172438	105172438	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	INF2-492	NM_001031714	exon6	c.767delA	p.E256fs	.	.	260.0	116.0	159.0	0.0	.	Atlas-Indel
RNF31	55072	hgsc.bcm.edu	37	14	24619809	24619809	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RNF31-90	NM_017999	exon8	c.1199delA	p.Q400fs	.	.	148.0	42.0	116.0	0.0	.	Pindel
ALDH6A1	4329	hgsc.bcm.edu	37	14	74534275	74534275	+	Splice_Site	DEL	A	A	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ALDH6A1-90	NM_005589	exon9	c.853-2T>-	.	.	.	43.0	12.0	32.0	0.0	.	Pindel
OR4M2	390538	hgsc.bcm.edu	37	15	22369302	22369302	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	OR4M2-69	NM_001004719	exon1	c.T727C	p.Y243H	ACCTGCTATTCCC	.	488.0	72.0	430.0	0.0	.	Atlas-SNP
HERC2	8924	hgsc.bcm.edu	37	15	28377252	28377252	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HERC2-234	NM_004667	exon81	c.T12564C	p.P4188P	CTTCATAGGCACT	.	257.0	114.0	252.0	0.0	.	Atlas-SNP
HERC2	8924	hgsc.bcm.edu	37	15	28408358	28408358	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HERC2-234	NM_004667	exon69	c.C10628T	p.A3543V	TCATCCGCAATCA	.	73.0	34.0	57.0	0.0	.	Atlas-SNP
HERC2	8924	hgsc.bcm.edu	37	15	28443647	28443647	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HERC2-234	NM_004667	exon50	c.T7888C	p.Y2630H	GAGGATAGCCTAC	.	127.0	55.0	106.0	0.0	.	Atlas-SNP
HERC2	8924	hgsc.bcm.edu	37	15	28473416	28473416	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HERC2-234	NM_004667	exon35	c.T5412C	p.L1804L	GAGCAGAAGGTCG	.	62.0	28.0	45.0	0.0	.	Atlas-SNP
APBA2	321	hgsc.bcm.edu	37	15	29409295	29409295	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	APBA2-90	NM_005503	exon14	c.T2209C	p.F737L	GCCATGTTCAGGC	.	253.0	117.0	151.0	0.0	.	Atlas-SNP
CASC5	57082	hgsc.bcm.edu	37	15	40914476	40914476	+	Missense_Mutation	SNP	A	A	G	rs73394756	byfrequency;alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CASC5-660	NM_170589	exon11	c.A2092G	p.I698V	CATAATATAGTCT	.	67.0	32.0	49.0	0.0	A|0.994;C|0.006	Atlas-SNP
SPG11	80208	hgsc.bcm.edu	37	15	44918706	44918706	+	Splice_Site	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SPG11-95	NM_025137	exon12	c.2068-1G>A	.	AACTTCCTAGGAA	.	46.0	22.0	35.0	0.0	.	Atlas-SNP
FBN1	2200	hgsc.bcm.edu	37	15	48764789	48764789	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FBN1-92	NM_000138	exon35	c.A4295G	p.D1432G	CCCATGTCGCATT	.	137.0	51.0	112.0	0.0	.	Atlas-SNP
FBN1	2200	hgsc.bcm.edu	37	15	48788314	48788314	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FBN1-92	NM_000138	exon20	c.A2402T	p.D801V	TTTAGATCAGGTT	.	214.0	92.0	220.0	0.0	.	Atlas-SNP
DTWD1	56986	hgsc.bcm.edu	37	15	49926737	49926737	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DTWD1-226	NM_001144955	exon4	c.C413T	p.A138V	AGGTTGCACTCAT	.	131.0	49.0	114.0	0.0	.	Atlas-SNP
PRTG	283659	hgsc.bcm.edu	37	15	56032850	56032850	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PRTG-92	NM_173814	exon2	c.A127T	p.K43X	GTTCTTTTACAAA	.	76.0	39.0	52.0	0.0	.	Atlas-SNP
TLN2	83660	hgsc.bcm.edu	37	15	63097938	63097938	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TLN2-573	NM_015059	exon48	c.C6617T	p.A2206V	CTACTGCCAACCT	.	178.0	90.0	162.0	0.0	.	Atlas-SNP
FBXL22	283807	hgsc.bcm.edu	37	15	63893575	63893575	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FBXL22-90	NM_203373	exon2	c.C434T	p.S145L	CGAAATCACCTCG	.	51.0	26.0	27.0	0.0	.	Atlas-SNP
HERC1	8925	hgsc.bcm.edu	37	15	63916523	63916523	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HERC1-666	NM_003922	exon72	c.A13279G	p.S4427G	ATGTGCTGTTCTG	.	116.0	44.0	105.0	0.0	.	Atlas-SNP
CILP	8483	hgsc.bcm.edu	37	15	65489631	65489631	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CILP-97	NM_003613	exon9	c.A2993C	p.Q998P	TTGGGCTGGTCCC	.	186.0	71.0	139.0	0.0	.	Atlas-SNP
NOX5	79400	hgsc.bcm.edu	37	15	69331288	69331288	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NOX5-136	NM_001184779	exon9	c.A1379G	p.E460G	GCTATGAGTGGCA	.	163.0	80.0	119.0	0.0	.	Atlas-SNP
BBS4	585	hgsc.bcm.edu	37	15	73029922	73029922	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	BBS4-90	NM_001252678	exon15	c.G1038C	p.E346D	AAGAGAGAAATAA	.	59.0	24.0	50.0	0.0	.	Atlas-SNP
STRA6	64220	hgsc.bcm.edu	37	15	74487774	74487774	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	STRA6-90	NM_001199041	exon7	c.G511A	p.A171T	AGAGGGCAGCATA	.	101.0	35.0	79.0	0.0	.	Atlas-SNP
C15orf39	56905	hgsc.bcm.edu	37	15	75498952	75498952	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	C15orf39-90	NM_015492	exon2	c.G563A	p.G188D	TGGATGGCACCTT	.	65.0	7.0	51.0	0.0	.	Atlas-SNP
CSPG4	1464	hgsc.bcm.edu	37	15	75979767	75979767	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CSPG4-229	NM_001897	exon3	c.C3639T	p.F1213F	CACGGAGAAGGCC	.	234.0	109.0	130.0	0.0	.	Atlas-SNP
PSMA4	5685	hgsc.bcm.edu	37	15	78838004	78838004	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PSMA4-90	NM_001102668	exon6	c.G192A	p.L64L	ATTGCTGTACATT	.	124.0	57.0	105.0	0.0	.	Atlas-SNP
TMC3	342125	hgsc.bcm.edu	37	15	81660598	81660598	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TMC3-70	NM_001080532	exon3	c.C308T	p.A103V	ACCTCTGCACCTG	.	97.0	35.0	88.0	0.0	.	Atlas-SNP
EFTUD1	79631	hgsc.bcm.edu	37	15	82512116	82512116	+	Silent	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	EFTUD1-91	NM_001040610	exon12	c.C1335A	p.L445L	TTCCTGGAGCACA	.	130.0	49.0	102.0	0.0	.	Atlas-SNP
AGBL1	123624	hgsc.bcm.edu	37	15	86810268	86810268	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_152336	exon12	c.T1661C	p.F554S	CCAAATTTGAGTC	.	112.0	45.0	115.0	0.0	.	Atlas-SNP
AP3S2	10239	hgsc.bcm.edu	37	15	90378789	90378789	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	AP3S2-90	NM_005829	exon6	c.C540T	p.G180G	GAGATCGCCAATG	.	106.0	46.0	90.0	0.0	.	Atlas-SNP
RCCD1	91433	hgsc.bcm.edu	37	15	91504901	91504901	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RCCD1-90	NM_033544	exon9	c.C1033T	p.R345C	CCTCGCCGTGTGG	.	316.0	146.0	201.0	0.0	.	Atlas-SNP
MCTP2	55784	hgsc.bcm.edu	37	15	95013607	95013607	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MCTP2-93	NM_001159643	exon18	c.G2241T	p.L747F	CTGTTTGATTCTG	.	69.0	29.0	54.0	0.0	.	Atlas-SNP
ARRDC4	91947	hgsc.bcm.edu	37	15	98511297	98511297	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ARRDC4-90	NM_183376	exon4	c.T576C	p.S192S	CACTTCTGGTCCA	.	50.0	15.0	37.0	0.0	.	Atlas-SNP
ADAMTS17	170691	hgsc.bcm.edu	37	15	100514681	100514681	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ADAMTS17-228	NM_139057	exon22	c.T3214A	p.W1072R	GGTACCACCGCAT	.	185.0	82.0	132.0	0.0	.	Atlas-SNP
OR4F15	390649	hgsc.bcm.edu	37	15	102358817	102358817	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	OR4F15-68	NM_001001674	exon1	c.A428G	p.Y143C	GTCTATACTTTTT	.	264.0	130.0	206.0	0.0	.	Atlas-SNP
VPS18	57617	hgsc.bcm.edu	37	15	41195414	41195415	+	Frame_Shift_Ins	INS	-	-	AG	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	VPS18-155	NM_020857	exon5	c.2797_2798insAG	p.K933fs	.	.	62.0	20.0	32.0	0.0	.	Atlas-Indel
SPPL2A	84888	hgsc.bcm.edu	37	15	51014348	51014350	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	AAG	AAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SPPL2A-90	NM_032802	exon13	c.1299_1301del	p.433_434del	.	.	29.0	14.0	28.0	0.0	.	Atlas-Indel
RORA	6095	hgsc.bcm.edu	37	15	60803784	60803785	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RORA-290	NM_134261	exon5	c.461_462del	p.154_154del	.	.	186.0	75.0	132.0	0.0	.	Atlas-Indel
SLC24A1	9187	hgsc.bcm.edu	37	15	65917184	65917185	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_004727	exon2	c.766_767insC	p.T256fs	.	.	182.0	53.0	158.0	0.0	.	Atlas-Indel
GOLGA6D	653643	hgsc.bcm.edu	37	15	75586567	75586567	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001145224	exon17	c.1918delG	p.A640fs	.	.	221.0	36.0	205.0	0.0	.	Atlas-Indel
AKAP13	11214	hgsc.bcm.edu	37	15	86287016	86287017	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	AKAP13-258	NM_007200	exon36	c.8352_8353insA	p.E2784fs	.	.	82.0	32.0	57.0	0.0	.	Atlas-Indel
TUBGCP5	114791	hgsc.bcm.edu	37	15	22855112	22855113	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TUBGCP5-91	NM_052903	exon13	c.1573_1574insA	p.E525fs	.	.	364.0	77.0	300.0	0.0	.	Pindel
EIF2AK4	440275	hgsc.bcm.edu	37	15	40326638	40326639	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	EIF2AK4-757	NM_001013703	exon38	c.4885_4886insA	p.E1629fs	.	.	135.0	30.0	120.0	0.0	.	Pindel
CHTF18	63922	hgsc.bcm.edu	37	16	840346	840346	+	Splice_Site	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CHTF18-227	NM_022092	exon6	c.700-1G>A	.	TGCACAGCGGCGG	.	76.0	30.0	44.0	0.0	.	Atlas-SNP
CRAMP1L	57585	hgsc.bcm.edu	37	16	1682360	1682360	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_020825	exon3	c.G688C	p.D230H	GACTTTGATCATG	.	123.0	53.0	71.0	0.0	.	Atlas-SNP
MAPK8IP3	23162	hgsc.bcm.edu	37	16	1814309	1814309	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MAPK8IP3-1109	NM_001040439	exon18	c.G2108T	p.C703F	TGTGGTGTGCCGC	.	194.0	83.0	38.0	0.0	.	Atlas-SNP
RPS2	6187	hgsc.bcm.edu	37	16	2013252	2013252	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RPS2-90	NM_002952	exon4	c.A273G	p.S91S	GATCTCTGATTCC	.	147.0	56.0	135.0	0.0	.	Atlas-SNP
ZNF598	90850	hgsc.bcm.edu	37	16	2052607	2052607	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF598-432	NM_178167	exon6	c.G592A	p.D198N	CATTGTCCAGGTA	.	205.0	73.0	154.0	0.0	.	Atlas-SNP
ZNF598	90850	hgsc.bcm.edu	37	16	2053060	2053060	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF598-432	NM_178167	exon5	c.G397A	p.D133N	CCAGGTCCCCGAA	.	161.0	52.0	80.0	0.0	.	Atlas-SNP
ABCA3	21	hgsc.bcm.edu	37	16	2374440	2374440	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ABCA3-1015	NM_001089	exon6	c.C412A	p.P138T	TGAAGGGGTGCTC	.	71.0	34.0	42.0	0.0	.	Atlas-SNP
CCNF	899	hgsc.bcm.edu	37	16	2487128	2487128	+	Splice_Site	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CCNF-658	NM_001761	exon5	c.347-2A>T	.	CCCCGCAGTGTCT	.	65.0	26.0	46.0	0.0	.	Atlas-SNP
CCNF	899	hgsc.bcm.edu	37	16	2487231	2487231	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CCNF-658	NM_001761	exon5	c.T448C	p.W150R	TTCATCTGGCTCT	.	73.0	30.0	60.0	0.0	.	Atlas-SNP
ATP6V0C	527	hgsc.bcm.edu	37	16	2564109	2564109	+	Missense_Mutation	SNP	C	C	G	rs147497038	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ATP6V0C-91	NM_001694	exon1	c.C5G	p.S2C	ACATGTCCGAGTC	.	78.0	44.0	38.0	0.0	C|1.000;T|0.000	Atlas-SNP
CEMP1	752014	hgsc.bcm.edu	37	16	2580891	2580891	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CEMP1-23	NM_001048212	exon1	c.G184A	p.A62T	CCTCTGCCTTGAC	.	109.0	49.0	108.0	0.0	.	Atlas-SNP
SRRM2	23524	hgsc.bcm.edu	37	16	2816678	2816678	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SRRM2-93	NM_016333	exon11	c.T6149A	p.I2050N	TTGCTATCCGCCG	.	233.0	98.0	183.0	0.0	.	Atlas-SNP
CLDN9	9080	hgsc.bcm.edu	37	16	3063682	3063682	+	Missense_Mutation	SNP	T	T	C	rs199692917		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CLDN9-90	NM_020982	exon1	c.T319C	p.C107R	ACCACGTGTGTGG	.	238.0	75.0	206.0	0.0	T|0.999;C|0.001	Atlas-SNP
CLDN9	9080	hgsc.bcm.edu	37	16	3063792	3063792	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CLDN9-90	NM_020982	exon1	c.C429T	p.I143I	CGCCATCATCCAG	.	179.0	66.0	162.0	0.0	.	Atlas-SNP
C16orf90	646174	hgsc.bcm.edu	37	16	3545393	3545393	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001080524	exon1	c.A29G	p.E10G	TGCAGCTCAGAAA	.	92.0	34.0	71.0	0.0	.	Atlas-SNP
USP7	7874	hgsc.bcm.edu	37	16	9004639	9004639	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	USP7-661	NM_003470	exon11	c.G1124C	p.G375A	TTGTCCCCATCGA	.	68.0	32.0	78.0	0.0	.	Atlas-SNP
USP7	7874	hgsc.bcm.edu	37	16	9004658	9004658	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	USP7-661	NM_003470	exon11	c.G1105A	p.A369T	CTACTGCCACATA	.	64.0	25.0	74.0	0.0	.	Atlas-SNP
CLEC16A	23274	hgsc.bcm.edu	37	16	11272519	11272519	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CLEC16A-92	NM_015226	exon23	c.C3134T	p.A1045V	CATGTGCTGAGCC	.	28.0	13.0	14.0	0.0	.	Atlas-SNP
NTAN1	123803	hgsc.bcm.edu	37	16	15131997	15131997	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NTAN1-90	NM_001270766	exon9	c.T509A	p.L170X	TTTTTTAAAAACA	.	121.0	41.0	101.0	0.0	.	Atlas-SNP
KIAA0430	9665	hgsc.bcm.edu	37	16	15725252	15725252	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KIAA0430-90	NM_001184999	exon6	c.T1328C	p.V443A	AGAACCACTGTGG	.	138.0	64.0	96.0	0.0	.	Atlas-SNP
TMC7	79905	hgsc.bcm.edu	37	16	19051758	19051758	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TMC7-93	NM_001160364	exon9	c.A997C	p.T333P	CGTCTGACAATCC	.	45.0	20.0	39.0	0.0	.	Atlas-SNP
PDILT	204474	hgsc.bcm.edu	37	16	20376740	20376740	+	Splice_Site	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PDILT-153	NM_174924	exon10	c.1237+2T>A	.	ATACTTACAGAAC	.	98.0	44.0	74.0	0.0	.	Atlas-SNP
PDILT	204474	hgsc.bcm.edu	37	16	20396090	20396090	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PDILT-153	NM_174924	exon3	c.A286T	p.I96F	AGCCGATCCCATT	.	120.0	45.0	87.0	0.0	.	Atlas-SNP
GGA2	23062	hgsc.bcm.edu	37	16	23481455	23481455	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GGA2-91	NM_015044	exon15	c.G1482A	p.R494R	TCCATTCCGGTCA	.	94.0	36.0	83.0	0.0	.	Atlas-SNP
EARS2	124454	hgsc.bcm.edu	37	16	23555852	23555852	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	EARS2-90	NM_001083614	exon3	c.G468A	p.R156R	GTGGTTCCGCAAG	.	25.0	10.0	22.0	0.0	.	Atlas-SNP
EARS2	124454	hgsc.bcm.edu	37	16	23555917	23555917	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	EARS2-90	NM_001083614	exon3	c.G403A	p.G135R	CAGCTCCGGTCTT	.	46.0	25.0	36.0	0.0	.	Atlas-SNP
GTF3C1	2975	hgsc.bcm.edu	37	16	27549248	27549248	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GTF3C1-94	NM_001520	exon4	c.G609T	p.K203N	ATCAACCCTGGAG	.	94.0	53.0	86.0	0.0	.	Atlas-SNP
ATXN2L	11273	hgsc.bcm.edu	37	16	28841942	28841942	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ATXN2L-92	NM_017492	exon9	c.G1041A	p.G347G	GGAGGGGAAGTAT	.	68.0	38.0	55.0	0.0	.	Atlas-SNP
ATXN2L	11273	hgsc.bcm.edu	37	16	28848085	28848085	+	Missense_Mutation	SNP	C	C	T	rs188659783		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ATXN2L-92	NM_017492	exon23	c.C3176T	p.P1059L	TCCACCCCCCGGG	.	108.0	53.0	61.0	0.0	C|0.999;T|0.000	Atlas-SNP
CD19	930	hgsc.bcm.edu	37	16	28943679	28943679	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CD19-92	NM_001178098	exon2	c.C101T	p.A34V	ATAACGCTGTGCT	.	92.0	48.0	58.0	0.0	.	Atlas-SNP
TAOK2	9344	hgsc.bcm.edu	37	16	29994580	29994580	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TAOK2-521	NM_004783	exon12	c.C1187T	p.A396V	CTGAAGCCCGGGA	.	45.0	19.0	49.0	0.0	.	Atlas-SNP
TAOK2	9344	hgsc.bcm.edu	37	16	29994973	29994973	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TAOK2-521	NM_004783	exon13	c.A1410G	p.R470R	CATCCGAACCGCC	.	57.0	27.0	55.0	0.0	.	Atlas-SNP
TAOK2	9344	hgsc.bcm.edu	37	16	30002194	30002194	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TAOK2-521	NM_004783	exon18	c.C2535T	p.S845S	CCAGAGCAAGATC	.	71.0	28.0	71.0	0.0	.	Atlas-SNP
TAOK2	9344	hgsc.bcm.edu	37	16	30002536	30002536	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TAOK2-521	NM_004783	exon19	c.C2797T	p.P933S	GGCTATCCTGCTC	.	160.0	61.0	94.0	0.0	.	Atlas-SNP
TAOK2	9344	hgsc.bcm.edu	37	16	30002651	30002651	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TAOK2-521	NM_004783	exon19	c.C2912T	p.S971F	AGCCGTCTCTGCT	.	102.0	45.0	45.0	0.0	.	Atlas-SNP
TBC1D10B	26000	hgsc.bcm.edu	37	16	30369775	30369775	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_015527	exon9	c.C1917T	p.S639S	GGCCCGGGACCCA	.	94.0	45.0	45.0	0.0	.	Atlas-SNP
ZNF785	146540	hgsc.bcm.edu	37	16	30594019	30594019	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF785-91	NM_152458	exon3	c.G1080A	p.W360X	GTGGATCCACCGA	.	102.0	40.0	77.0	0.0	.	Atlas-SNP
SRCAP	10847	hgsc.bcm.edu	37	16	30745920	30745920	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SRCAP-94	NM_006662	exon31	c.C6713T	p.T2238I	AGCAGACTCATAT	.	204.0	87.0	171.0	0.0	.	Atlas-SNP
ORAI3	93129	hgsc.bcm.edu	37	16	30964661	30964661	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ORAI3-68	NM_152288	exon2	c.C384T	p.N128N	GAGCAACATCCAC	.	199.0	70.0	172.0	0.0	.	Atlas-SNP
ZNF668	79759	hgsc.bcm.edu	37	16	31072498	31072498	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF668-585	NM_001172669	exon4	c.C1820G	p.A607G	TCGCTGGCACTCA	.	154.0	64.0	93.0	0.0	.	Atlas-SNP
ITGAX	3687	hgsc.bcm.edu	37	16	31371245	31371245	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ITGAX-229	NM_000887	exon7	c.C566T	p.S189F	AGTTTTCCCTGAT	.	81.0	40.0	65.0	0.0	.	Atlas-SNP
ARMC5	79798	hgsc.bcm.edu	37	16	31471222	31471222	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ARMC5-24	NM_001105247	exon1	c.G377T	p.R126L	GCCTGCGCAAGAC	.	53.0	24.0	31.0	0.0	.	Atlas-SNP
PHKB	5257	hgsc.bcm.edu	37	16	47581450	47581450	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PHKB-154	NM_001031835	exon8	c.T680G	p.L227R	CAGAGCTACATTC	.	66.0	29.0	59.0	0.0	.	Atlas-SNP
NLRC5	84166	hgsc.bcm.edu	37	16	57089359	57089359	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NLRC5-159	NM_032206	exon26	c.G3674A	p.C1225Y	CAGGCTGCAGCCT	.	103.0	87.0	138.0	1.0	.	Atlas-SNP
CNGB1	1258	hgsc.bcm.edu	37	16	57993956	57993956	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	CNGB1,NS,NS,-2	CNGB1-137	NM_001135639	exon10	c.C597T	p.R199R	CTGGGGGCGTCCT	.	9.0	7.0	14.0	0.0	.	Atlas-SNP
FUK	197258	hgsc.bcm.edu	37	16	70503129	70503129	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FUK-91	NM_145059	exon10	c.C858T	p.P286P	GAGGCCCCCAGAG	.	66.0	51.0	90.0	0.0	.	Atlas-SNP
WDR59	79726	hgsc.bcm.edu	37	16	74922199	74922199	+	Silent	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	WDR59-92	NM_030581	exon22	c.G2214T	p.R738R	CCGGAGCCGGCAA	.	130.0	57.0	105.0	0.0	.	Atlas-SNP
ZFP1	162239	hgsc.bcm.edu	37	16	75200759	75200759	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZFP1-92	NM_153688	exon3	c.T107G	p.V36G	TGGATGTGATGCT	.	167.0	56.0	130.0	0.0	.	Atlas-SNP
ZCCHC14	23174	hgsc.bcm.edu	37	16	87445168	87445168	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZCCHC14-154	NM_015144	exon12	c.C2748A	p.H916Q	GGCGCGGTGACCA	.	117.0	51.0	131.0	0.0	.	Atlas-SNP
ZCCHC14	23174	hgsc.bcm.edu	37	16	87445172	87445172	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZCCHC14-154	NM_015144	exon12	c.G2744A	p.G915D	CGGTGACCAGTGG	.	120.0	52.0	138.0	0.0	.	Atlas-SNP
ZCCHC14	23174	hgsc.bcm.edu	37	16	87445173	87445173	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZCCHC14-154	NM_015144	exon12	c.G2743A	p.G915S	GGTGACCAGTGGC	.	122.0	52.0	138.0	0.0	.	Atlas-SNP
ZCCHC14	23174	hgsc.bcm.edu	37	16	87445179	87445179	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZCCHC14-154	NM_015144	exon12	c.G2737T	p.A913S	CAGTGGCCCCGCA	.	131.0	61.0	140.0	0.0	.	Atlas-SNP
GALNS	2588	hgsc.bcm.edu	37	16	88909119	88909119	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GALNS-153	NM_000512	exon2	c.C239T	p.S80L	CATGGCGAGCACA	.	111.0	58.0	62.0	0.0	.	Atlas-SNP
CPNE7	27132	hgsc.bcm.edu	37	16	89653121	89653121	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CPNE7-90	NM_014427	exon10	c.G1049A	p.R350H	AGAGACGCAGTTA	.	119.0	49.0	79.0	0.0	.	Atlas-SNP
C16orf88	400506	hgsc.bcm.edu	37	16	19725705	19725706	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	C16orf88-68	NM_001012991	exon2	c.653_654insA	p.I218fs	.	.	51.0	15.0	24.0	0.0	.	Atlas-Indel
VWA3A	146177	hgsc.bcm.edu	37	16	22135022	22135022	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	VWA3A-1	NM_173615	exon16	c.1525delG	p.E509fs	.	.	118.0	36.0	83.0	0.0	.	Atlas-Indel
SALL1	6299	hgsc.bcm.edu	37	16	51175655	51175656	+	In_Frame_Ins	INS	-	-	GCTGCT	rs113614842	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SALL1-98	NM_002968	exon2	c.478_479insAGCAGC	p.G160delinsSSG	.	.	170.0	28.0	80.0	0.0	-|0.500;GCC|0.250;GCT|0.250	Atlas-Indel
ZFHX3	463	hgsc.bcm.edu	37	16	72822586	72822586	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZFHX3-72	NM_006885	exon10	c.9590delA	p.Q3197fs	.	.	110.0	50.0	53.0	0.0	.	Atlas-Indel
ZC3H18	124245	hgsc.bcm.edu	37	16	88691141	88691141	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZC3H18-69	NM_144604	exon12	c.2029delA	p.T677fs	.	.	127.0	54.0	72.0	0.0	.	Atlas-Indel
PIEZO1	9780	hgsc.bcm.edu	37	16	88787611	88787611	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001142864	exon39	c.5632delA	p.K1878fs	.	.	29.0	10.0	23.0	0.0	.	Atlas-Indel
PIEZO1	9780	hgsc.bcm.edu	37	16	88787613	88787614	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001142864	exon39	c.5629_5630del	p.1877_1877del	.	.	29.0	10.0	23.0	0.0	.	Atlas-Indel
MYH11	4629	hgsc.bcm.edu	37	16	15802687	15802687	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MYH11-666	NM_001040113	exon42	c.5820delA	p.P1940fs	.	.	99.0	28.0	72.0	0.0	.	Pindel
ARL6IP1	23204	hgsc.bcm.edu	37	16	18805952	18805954	+	In_Frame_Del	DEL	TTG	TTG	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	TTG	TTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ARL6IP1-90	NM_015161	exon5	c.461_463del	p.154_155del	.	.	552.0	106.0	454.0	0.0	.	Pindel
ZNF469	84627	hgsc.bcm.edu	37	16	88504203	88504203	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001127464	exon2	c.10240delA	p.R3414fs	.	.	85.0	23.0	43.0	0.0	.	Pindel
MSLN	10232	hgsc.bcm.edu	37	16	816959	816960	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MSLN-91	NM_001177355	exon15	c.1448_1449insT	p.A483fs	.	.	268.0	74.0	212.0	0.0	.	Pindel
SHPK	23729	hgsc.bcm.edu	37	17	3518689	3518689	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SHPK-69	NM_013276	exon6	c.C966T	p.N322N	GCCCCCGTTGAGT	.	156.0	121.0	215.0	0.0	.	Atlas-SNP
TMEM102	284114	hgsc.bcm.edu	37	17	7339882	7339882	+	Missense_Mutation	SNP	G	G	A	rs141257669	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TMEM102-90	NM_178518	exon3	c.G584A	p.S195N	CGCACAGCTACGT	.	121.0	9.0	144.0	0.0	G|1.000;T|0.000	Atlas-SNP
TP53	7157	hgsc.bcm.edu	37	17	7577018	7577018	+	Splice_Site	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	TP53,NS,carcinoma,0	TP53-70225	NM_000546	exon9	c.919+1G>T	.	TGCTTACCTCGCT	.	67.0	58.0	105.0	0.0	.	Atlas-SNP
ALOXE3	59344	hgsc.bcm.edu	37	17	8017851	8017851	+	Nonsense_Mutation	SNP	G	G	A	rs141340759		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	ALOXE3,shoulder,malignant_melanoma,0	ALOXE3-229	NM_001165960	exon6	c.C1027T	p.R343X	AGTATCGAACATT	.	159.0	121.0	275.0	1.0	.	Atlas-SNP
ALOXE3	59344	hgsc.bcm.edu	37	17	8017917	8017917	+	Missense_Mutation	SNP	G	G	A	rs149284623		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ALOXE3-229	NM_001165960	exon6	c.C961T	p.R321W	GGTACCGATTCCC	.	57.0	42.0	126.0	0.0	G|1.000;A|0.000	Atlas-SNP
PIK3R5	23533	hgsc.bcm.edu	37	17	8783988	8783988	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PIK3R5-1146	NM_014308	exon19	c.C2611T	p.P871S	TGATGGGCAGGCA	.	57.0	44.0	67.0	0.0	.	Atlas-SNP
TRPV2	51393	hgsc.bcm.edu	37	17	16336945	16336945	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TRPV2-91	NM_016113	exon13	c.C2047T	p.R683W	AAGCAGCGGGCAG	.	88.0	68.0	133.0	0.0	.	Atlas-SNP
MYO15A	51168	hgsc.bcm.edu	37	17	18022386	18022386	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MYO15A-97	NM_016239	exon2	c.G272A	p.R91H	AGATGCGCATGGG	.	161.0	123.0	137.0	0.0	.	Atlas-SNP
MYO15A	51168	hgsc.bcm.edu	37	17	18025311	18025311	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MYO15A-97	NM_016239	exon2	c.C3197T	p.A1066V	CACTGGCTGCGTG	.	49.0	34.0	68.0	0.0	.	Atlas-SNP
RAB34	83871	hgsc.bcm.edu	37	17	27041696	27041696	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RAB34-227	NM_001144942	exon10	c.A721G	p.T241A	TGGCAGTTAGGTA	.	116.0	94.0	162.0	1.0	.	Atlas-SNP
NF1	4763	hgsc.bcm.edu	37	17	29528059	29528059	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NF1-3353	NM_001128147	exon10	c.T1067A	p.L356Q	AGAACCTGCTTTT	.	36.0	26.0	62.0	0.0	.	Atlas-SNP
NF1	4763	hgsc.bcm.edu	37	17	29662047	29662047	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	NF1,NS,other,-2	NF1-3353	NM_000267	exon39	c.C5941T	p.Q1981X	CTTGGGCAGGTAT	.	41.0	28.0	59.0	0.0	.	Atlas-SNP
RHOT1	55288	hgsc.bcm.edu	37	17	30535210	30535210	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RHOT1-93	NM_001033566	exon18	c.T1621C	p.S541P	AGTATTTCACCTA	.	74.0	53.0	133.0	0.0	.	Atlas-SNP
ZNF830	91603	hgsc.bcm.edu	37	17	33289639	33289639	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF830-89	NM_052857	exon1	c.G1054A	p.D352N	GACAGCGATGATG	.	37.0	27.0	65.0	0.0	.	Atlas-SNP
PSMB3	5691	hgsc.bcm.edu	37	17	36912138	36912138	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PSMB3-90	NM_002795	exon3	c.C191T	p.A64V	TCAGTGCCCAGCG	.	106.0	78.0	171.0	0.0	.	Atlas-SNP
KRTAP4-3	85290	hgsc.bcm.edu	37	17	39324164	39324164	+	Silent	SNP	G	G	T	rs12600645	bycluster;byfrequency;byhapmap;alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KRTAP4-3-22	NM_033187	exon1	c.C261A	p.S87S	GCAGCTGGAGATA	.	308.0	195.0	279.0	1.0	G|0.750;A|0.250	Atlas-SNP
KRTAP9-9	81870	hgsc.bcm.edu	37	17	39411754	39411754	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_030975	exon1	c.G117A	p.V39V	CTGTGTGTCTAGC	.	57.0	44.0	89.0	0.0	.	Atlas-SNP
TUBG1	7283	hgsc.bcm.edu	37	17	40767023	40767023	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TUBG1-91	NM_001070	exon11	c.G1320A	p.R440R	CACACGGCCAGAC	.	187.0	154.0	211.0	0.0	.	Atlas-SNP
ATXN7L3	56970	hgsc.bcm.edu	37	17	42274975	42274975	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ATXN7L3-68	NM_020218	exon2	c.A175C	p.K59Q	AATCCTTCATGCT	.	103.0	76.0	130.0	0.0	.	Atlas-SNP
SLC4A1	6521	hgsc.bcm.edu	37	17	42337788	42337788	+	Silent	SNP	G	G	A	rs55830560	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLC4A1-92	NM_000342	exon6	c.C469T	p.L157L	GCAGCAGGGCCCG	.	141.0	107.0	201.0	0.0	.	Atlas-SNP
GPATCH8	23131	hgsc.bcm.edu	37	17	42475271	42475271	+	Missense_Mutation	SNP	C	C	T	rs200060507		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GPATCH8-94	NM_001002909	exon8	c.G4174A	p.G1392S	GAATGCCGATGGC	.	97.0	8.0	121.0	0.0	C|0.999;T|0.001	Atlas-SNP
ACBD4	79777	hgsc.bcm.edu	37	17	43214817	43214817	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ACBD4-92	NM_001135705	exon6	c.C498G	p.S166R	CCCAAGCCCAGGT	.	53.0	44.0	106.0	0.0	.	Atlas-SNP
BZRAP1	9256	hgsc.bcm.edu	37	17	56388274	56388274	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	BZRAP1-229	NM_004758	exon19	c.C3382T	p.P1128S	CTCCTGGAGGCTC	.	27.0	21.0	25.0	0.0	.	Atlas-SNP
RNF43	54894	hgsc.bcm.edu	37	17	56435785	56435785	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RNF43-92	NM_017763	exon9	c.G1352A	p.C451Y	TCTGTGCAATAGC	.	38.0	28.0	71.0	0.0	.	Atlas-SNP
RAD51C	5889	hgsc.bcm.edu	37	17	56774113	56774113	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RAD51C-637	NM_058216	exon3	c.C464T	p.A155V	GTGAAGCAGTTTT	.	95.0	55.0	175.0	0.0	.	Atlas-SNP
UNC13D	201294	hgsc.bcm.edu	37	17	73839590	73839590	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	UNC13D-92	NM_199242	exon2	c.C128T	p.P43L	TGGGATGGAGGCT	.	75.0	61.0	92.0	0.0	.	Atlas-SNP
UBE2O	63893	hgsc.bcm.edu	37	17	74387281	74387281	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	UBE2O-272	NM_022066	exon18	c.C3622A	p.L1208M	AGGCCAGGCCCTG	.	63.0	54.0	95.0	0.0	.	Atlas-SNP
DNAH17	8632	hgsc.bcm.edu	37	17	76455088	76455088	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DNAH17-142	NM_173628	exon61	c.A9856T	p.I3286F	CGGCAATCTTGTT	.	67.0	53.0	98.0	0.0	.	Atlas-SNP
C17orf97	400566	hgsc.bcm.edu	37	17	260403	260405	+	In_Frame_Del	DEL	GAA	GAA	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	GAA	GAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	C17orf97-91	NM_001013672	exon1	c.269_271del	p.90_91del	.	.	20.0	15.0	19.0	0.0	.	Atlas-Indel
CCDC144A	9720	hgsc.bcm.edu	37	17	16630989	16630989	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_014695	exon9	c.2039delC	p.T680fs	.	.	436.0	104.0	624.0	0.0	.	Atlas-Indel
CCDC144B	284047	hgsc.bcm.edu	37	17	18491040	18491040	+	RNA	DEL	T	T	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CCDC144B-70	.	.	.	.	.	.	404.0	118.0	549.0	0.0	.	Atlas-Indel
CEP192	55125	hgsc.bcm.edu	37	18	13059087	13059087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CEP192-27	NM_032142	exon21	c.C4264T	p.L1422F	GTGGATCTTTCAA	.	69.0	4.0	99.0	0.0	.	Atlas-SNP
CABYR	26256	hgsc.bcm.edu	37	18	21739840	21739840	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CABYR-90	NM_138644	exon5	c.A946G	p.N316D	AATGCTAATCCTC	.	55.0	40.0	86.0	0.0	.	Atlas-SNP
MYO5B	4645	hgsc.bcm.edu	37	18	47429038	47429038	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MYO5B-72	NM_001080467	exon21	c.G2737A	p.A913T	GCTCTGCTGAGCG	.	56.0	40.0	71.0	0.0	.	Atlas-SNP
MEX3C	51320	hgsc.bcm.edu	37	18	48702805	48702805	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MEX3C-659	NM_016626	exon2	c.T1896G	p.C632W	GTTGGCACATTCC	.	136.0	106.0	216.0	0.0	.	Atlas-SNP
MEX3C	51320	hgsc.bcm.edu	37	18	48702806	48702806	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MEX3C-659	NM_016626	exon2	c.G1895T	p.C632F	TTGGCACATTCCA	.	136.0	107.0	215.0	0.0	.	Atlas-SNP
TXNL1	9352	hgsc.bcm.edu	37	18	54293682	54293682	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TXNL1-90	NM_004786	exon2	c.106delC	p.P36fs	.	.	84.0	64.0	153.0	0.0	.	Atlas-Indel
PPAP2C	8612	hgsc.bcm.edu	37	19	288051	288051	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PPAP2C-90	NM_177543	exon2	c.C236A	p.A79D	ACCCCAGCCATGA	.	321.0	107.0	196.0	0.0	.	Atlas-SNP
WDR18	57418	hgsc.bcm.edu	37	19	985942	985942	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	WDR18-91	NM_024100	exon2	c.G288A	p.L96L	CGTCCTGGCAGGA	.	201.0	88.0	173.0	0.0	.	Atlas-SNP
SGTA	6449	hgsc.bcm.edu	37	19	2763724	2763724	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SGTA-91	NM_003021	exon6	c.G424A	p.A142T	CGCCTGCGTAGTT	.	122.0	51.0	89.0	0.0	.	Atlas-SNP
EEF2	1938	hgsc.bcm.edu	37	19	3979353	3979353	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	EEF2-90	NM_001961	exon11	c.G1687A	p.E563K	GGTCCTCCTCCAG	.	134.0	63.0	104.0	0.0	.	Atlas-SNP
FUT6	2528	hgsc.bcm.edu	37	19	5831650	5831650	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FUT6-90	NM_001040701	exon2	c.A929G	p.K310R	TGGTCCTTGTCCA	.	1343.0	347.0	1019.0	1.0	.	Atlas-SNP
MLLT1	4298	hgsc.bcm.edu	37	19	6213091	6213091	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MLLT1-658	NM_005934	exon12	c.C1642T	p.R548C	GTTTGCGCACGGT	.	215.0	102.0	140.0	0.0	.	Atlas-SNP
GPR108	56927	hgsc.bcm.edu	37	19	6731283	6731283	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GPR108-68	NM_001080452	exon16	c.A1361G	p.Y454C	TAGACGTAGCAGA	.	115.0	49.0	53.0	0.0	.	Atlas-SNP
PNPLA6	10908	hgsc.bcm.edu	37	19	7622153	7622153	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PNPLA6-47	NM_001166111	exon29	c.A3410G	p.Y1137C	GCGGCTACATCAA	.	164.0	60.0	69.0	0.0	.	Atlas-SNP
HNRNPM	4670	hgsc.bcm.edu	37	19	8531219	8531219	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HNRNPM-68	NM_005968	exon7	c.G731A	p.R244H	AAAGTCGTGGAAT	.	163.0	60.0	143.0	0.0	.	Atlas-SNP
PRAM1	84106	hgsc.bcm.edu	37	19	8563981	8563981	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_032152	exon2	c.T711C	p.P237P	CTTCTTAGGGAGG	.	59.0	23.0	35.0	0.0	.	Atlas-SNP
ADAMTS10	81794	hgsc.bcm.edu	37	19	8645784	8645784	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ADAMTS10-229	NM_030957	exon26	c.G3305A	p.G1102D	TAGTGGCCATGGC	.	33.0	8.0	20.0	0.0	.	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	37	19	9019621	9019621	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MUC16-566	NM_024690	exon22	c.A37525G	p.T12509A	CAGAGGTCCGATG	.	328.0	139.0	273.0	0.0	.	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	37	19	9084962	9084962	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MUC16-566	NM_024690	exon1	c.A6853G	p.T2285A	TTGAAGTCAACTC	.	82.0	32.0	84.0	0.0	.	Atlas-SNP
OR1M1	125963	hgsc.bcm.edu	37	19	9204539	9204539	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	OR1M1-71	NM_001004456	exon1	c.A619T	p.I207L	ATGGTGATAGCCA	.	117.0	54.0	101.0	0.0	.	Atlas-SNP
ZNF559	84527	hgsc.bcm.edu	37	19	9453476	9453476	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF559-91	NM_001202407	exon6	c.C1223T	p.S408L	ACTCCTCGCACCT	.	201.0	83.0	133.0	0.0	.	Atlas-SNP
ZNF426	79088	hgsc.bcm.edu	37	19	9639084	9639084	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF426-91	NM_024106	exon8	c.C1637T	p.S546L	CGAAGTGAACGGG	.	25.0	12.0	35.0	0.0	.	Atlas-SNP
ICAM1	3383	hgsc.bcm.edu	37	19	10394800	10394800	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ICAM1-91	NM_000201	exon4	c.C729T	p.F243F	GCTGTTCCCAGTC	.	114.0	50.0	106.0	0.0	.	Atlas-SNP
ICAM1	3383	hgsc.bcm.edu	37	19	10394801	10394801	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ICAM1-91	NM_000201	exon4	c.C730T	p.P244S	CTGTTCCCAGTCT	.	113.0	50.0	104.0	0.0	.	Atlas-SNP
PDE4A	5141	hgsc.bcm.edu	37	19	10578111	10578111	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PDE4A-523	NM_001111309	exon15	c.G2292A	p.R764R	TTGGAGGACCCTG	.	106.0	37.0	97.0	0.0	.	Atlas-SNP
ATG4D	84971	hgsc.bcm.edu	37	19	10657607	10657607	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ATG4D-90	NM_032885	exon4	c.C586T	p.P196S	TGGATGCCCCCAC	.	87.0	39.0	33.0	0.0	.	Atlas-SNP
SMARCA4	6597	hgsc.bcm.edu	37	19	11097117	11097117	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SMARCA4-1523	NM_003072	exon4	c.C608T	p.A203V	AGATGGCGGTGCA	.	129.0	49.0	65.0	0.0	.	Atlas-SNP
KANK2	25959	hgsc.bcm.edu	37	19	11304002	11304002	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KANK2-68	NM_001136191	exon4	c.C754T	p.L252F	CGGGGAGGTCCAG	.	64.0	4.0	42.0	0.0	.	Atlas-SNP
DOCK6	57572	hgsc.bcm.edu	37	19	11326127	11326127	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DOCK6-93	NM_020812	exon32	c.C4042A	p.P1348T	TCTCCGGATTCCC	.	152.0	66.0	137.0	0.0	.	Atlas-SNP
ZNF441	126068	hgsc.bcm.edu	37	19	11892031	11892031	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF441-69	NM_152355	exon4	c.A1392G	p.V464V	TCGAGTACATGAA	.	47.0	17.0	44.0	0.0	.	Atlas-SNP
ZNF491	126069	hgsc.bcm.edu	37	19	11917409	11917409	+	Missense_Mutation	SNP	C	C	T	rs140071849	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF491-92	NM_152356	exon3	c.C641T	p.P214L	AGAAGCCGTACAA	.	44.0	13.0	46.0	0.0	C|1.000;T|0.000	Atlas-SNP
ZNF700	90592	hgsc.bcm.edu	37	19	12060900	12060900	+	Silent	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF700-90	NM_144566	exon4	c.T2061A	p.S687S	CACATCTGCCAAG	.	168.0	85.0	118.0	0.0	.	Atlas-SNP
ZNF878	729747	hgsc.bcm.edu	37	19	12155177	12155177	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001080404	exon4	c.G1039A	p.A347T	TGAAGGCTTTCAC	.	36.0	22.0	24.0	0.0	.	Atlas-SNP
ZNF44	51710	hgsc.bcm.edu	37	19	12386792	12386792	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF44-23	NM_016264	exon2	c.A109G	p.I37V	TCCTAATGGTTTC	.	159.0	66.0	133.0	0.0	.	Atlas-SNP
ZNF563	147837	hgsc.bcm.edu	37	19	12430322	12430322	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF563-90	NM_145276	exon4	c.G517A	p.E173K	CACATTCCTTACA	.	210.0	74.0	171.0	0.0	.	Atlas-SNP
ZNF564	163050	hgsc.bcm.edu	37	19	12637692	12637692	+	Silent	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF564-91	NM_144976	exon4	c.A1230T	p.I410I	TTCGTGTATTTGA	.	126.0	56.0	86.0	0.0	.	Atlas-SNP
MAN2B1	4125	hgsc.bcm.edu	37	19	12768936	12768936	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MAN2B1-94	NM_000528	exon10	c.C1250A	p.A417E	ACCAGCGCCTCCA	.	117.0	55.0	46.0	0.0	.	Atlas-SNP
TRMT1	55621	hgsc.bcm.edu	37	19	13216335	13216335	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TRMT1-92	NM_017722	exon14	c.G1669A	p.A557T	AGTTGGCCTCCGG	.	89.0	34.0	77.0	0.0	.	Atlas-SNP
CACNA1A	773	hgsc.bcm.edu	37	19	13397604	13397604	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CACNA1A-67	NM_001127221	exon20	c.G3269A	p.G1090D	GGCAGGCCGGCGT	.	55.0	20.0	6.0	0.0	.	Atlas-SNP
LPHN1	22859	hgsc.bcm.edu	37	19	14261780	14261780	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LPHN1-523	NM_014921	exon23	c.C4315T	p.R1439W	GACGCCGCACCTG	.	110.0	49.0	39.0	0.0	.	Atlas-SNP
OR7A17	26333	hgsc.bcm.edu	37	19	14991440	14991440	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	OR7A17-68	NM_030901	exon1	c.C728T	p.S243L	AGGTGTGATGCAC	.	177.0	64.0	160.0	0.0	.	Atlas-SNP
WIZ	58525	hgsc.bcm.edu	37	19	15535673	15535673	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	WIZ-68	NM_021241	exon6	c.G1780A	p.A594T	GGTAGGCGCCCAC	.	158.0	11.0	89.0	0.0	.	Atlas-SNP
CYP4F12	66002	hgsc.bcm.edu	37	19	15794437	15794437	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CYP4F12-95	NM_023944	exon7	c.G782C	p.R261P	CCTGCCGCCTGGT	.	139.0	63.0	139.0	0.0	.	Atlas-SNP
HAUS8	93323	hgsc.bcm.edu	37	19	17170457	17170457	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HAUS8-90	NM_001011699	exon6	c.A327T	p.K109N	GATGCTTTTGTCT	.	62.0	29.0	77.0	0.0	.	Atlas-SNP
MAP1S	55201	hgsc.bcm.edu	37	19	17844087	17844087	+	Silent	SNP	C	C	T	rs113822615	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MAP1S-90	NM_018174	exon6	c.C2874T	p.S958S	CGGGAGCAGCGCC	.	336.0	21.0	182.0	0.0	C|0.500;T|0.500	Atlas-SNP
JAK3	3718	hgsc.bcm.edu	37	19	17953936	17953936	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	JAK3,NS,lymphoid_neoplasm,+1	JAK3-2418	NM_000215	exon5	c.C466T	p.L156F	CCTTGAGACTGAG	.	107.0	44.0	65.0	1.0	.	Atlas-SNP
PDE4C	5143	hgsc.bcm.edu	37	19	18331093	18331093	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PDE4C-94	NM_000923	exon8	c.T745A	p.S249T	TTTCGGACAGGTG	.	225.0	80.0	208.0	0.0	.	Atlas-SNP
SUGP2	10147	hgsc.bcm.edu	37	19	19115190	19115190	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SUGP2-91	NM_014884	exon7	c.G2716T	p.A906S	CGGGGGCCTCCTC	.	77.0	34.0	33.0	0.0	.	Atlas-SNP
NCAN	1463	hgsc.bcm.edu	37	19	19337773	19337773	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NCAN-94	NM_004386	exon7	c.G1551A	p.V517V	TGCAGTGAACCAA	.	93.0	45.0	84.0	0.0	.	Atlas-SNP
GMIP	51291	hgsc.bcm.edu	37	19	19744710	19744710	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GMIP-91	NM_016573	exon19	c.G2374A	p.D792N	CTGGGTCAAGGTG	.	54.0	26.0	39.0	0.0	.	Atlas-SNP
GMIP	51291	hgsc.bcm.edu	37	19	19748233	19748233	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GMIP-91	NM_016573	exon11	c.G1065C	p.E355D	CGGGGCCTCGGGC	.	24.0	9.0	11.0	0.0	.	Atlas-SNP
ZNF486	90649	hgsc.bcm.edu	37	19	20307780	20307780	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF486-47	NM_052852	exon4	c.T261C	p.C87C	TGTGTGTTCTCAT	.	93.0	41.0	80.0	0.0	.	Atlas-SNP
UBA2	10054	hgsc.bcm.edu	37	19	34941214	34941214	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	UBA2-227	NM_005499	exon9	c.A816G	p.L272L	CAAACTATGGCGG	.	195.0	85.0	131.0	0.0	.	Atlas-SNP
SCGB2B2	284402	hgsc.bcm.edu	37	19	35085231	35085231	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001025591	exon2	c.C95T	p.A32V	ACATTCGCAAGCA	.	151.0	69.0	138.0	0.0	.	Atlas-SNP
LGI4	163175	hgsc.bcm.edu	37	19	35625482	35625482	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LGI4-91	NM_139284	exon1	c.A103T	p.K35X	TGTCTTTAGAGCA	.	189.0	83.0	152.0	0.0	.	Atlas-SNP
FFAR2	2867	hgsc.bcm.edu	37	19	35941567	35941567	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FFAR2-90	NM_005306	exon1	c.T951C	p.G317G	TGTGGGTCAAGGA	.	123.0	56.0	86.0	0.0	.	Atlas-SNP
DMKN	93099	hgsc.bcm.edu	37	19	36002386	36002386	+	Missense_Mutation	SNP	C	C	T	rs117522133	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DMKN-155	NM_033317	exon5	c.G845A	p.S282N	CCGCCACTGCTGC	.	90.0	21.0	54.0	0.0	C|0.945;T|0.055	Atlas-SNP
DMKN	93099	hgsc.bcm.edu	37	19	36002389	36002389	+	Missense_Mutation	SNP	C	C	T	rs142519211	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DMKN-155	NM_033317	exon5	c.G842A	p.S281N	CCACTGCTGCCGC	.	90.0	18.0	54.0	0.0	C|0.957;T|0.043	Atlas-SNP
MLL4	8085	hgsc.bcm.edu	37	19	36223774	36223774	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MLL4-697	NM_014727	exon28	c.C6324A	p.D2108E	TGAGGACCTGCCA	.	97.0	38.0	74.0	0.0	.	Atlas-SNP
WDR62	284403	hgsc.bcm.edu	37	19	36574056	36574056	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	WDR62-90	NM_001083961	exon11	c.C1463G	p.P488R	GGACACCCATGGA	.	148.0	77.0	120.0	0.0	.	Atlas-SNP
COX7A1	1346	hgsc.bcm.edu	37	19	36643303	36643303	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	COX7A1-226	NM_001864	exon1	c.G7A	p.A3T	GAAGGGCCTGCAT	.	107.0	47.0	61.0	0.0	.	Atlas-SNP
SIPA1L3	23094	hgsc.bcm.edu	37	19	38590772	38590772	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SIPA1L3-91	NM_015073	exon5	c.G1836A	p.L612L	ACTGCTGAAGCTC	.	81.0	35.0	83.0	0.0	.	Atlas-SNP
GGN	199720	hgsc.bcm.edu	37	19	38875168	38875168	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GGN-90	NM_152657	exon4	c.C1843T	p.L615L	TGCTCAGCCTAGT	.	84.0	41.0	69.0	0.0	.	Atlas-SNP
LGALS7	3963	hgsc.bcm.edu	37	19	39262626	39262626	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LGALS7-158	NM_002307	exon3	c.C140T	p.A47V	AGCGCGGCATCGG	.	440.0	216.0	250.0	1.0	.	Atlas-SNP
LGALS7	3963	hgsc.bcm.edu	37	19	39262667	39262667	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LGALS7-158	NM_002307	exon3	c.C99A	p.F33L	TACATGGAACCTG	.	303.0	184.0	200.0	1.0	.	Atlas-SNP
PAPL	0	hgsc.bcm.edu	37	19	39591616	39591616	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001004318	exon8	c.C835T	p.P279S	GCCCGGCCGTGGA	.	66.0	24.0	50.0	0.0	.	Atlas-SNP
LRFN1	57622	hgsc.bcm.edu	37	19	39805934	39805934	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LRFN1-70	NM_020862	exon1	c.C43T	p.P15S	CAGCGGGCGGCGG	.	43.0	16.0	6.0	0.0	.	Atlas-SNP
AXL	558	hgsc.bcm.edu	37	19	41758838	41758838	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	AXL-1403	NM_021913	exon16	c.T1892C	p.F631S	ACAGCTTCCTCCT	.	63.0	26.0	59.0	0.0	.	Atlas-SNP
CEACAM5	1048	hgsc.bcm.edu	37	19	42224956	42224956	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CEACAM5-92	NM_004363	exon8	c.T1886C	p.I629T	GGCGTATCAATGG	.	317.0	153.0	279.0	0.0	.	Atlas-SNP
MEGF8	1954	hgsc.bcm.edu	37	19	42861562	42861562	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MEGF8-23	NM_001271938	exon28	c.C4837A	p.Q1613K	GCCCCCCAGACCG	.	84.0	37.0	53.0	0.0	.	Atlas-SNP
PSG6	5675	hgsc.bcm.edu	37	19	43411912	43411912	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PSG6-92	NM_001031850	exon4	c.C801A	p.N267K	GGTGTAGTTCCGA	.	156.0	52.0	162.0	0.0	.	Atlas-SNP
IRGQ	126298	hgsc.bcm.edu	37	19	44097165	44097165	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	IRGQ-92	NM_001007561	exon3	c.G885A	p.T295T	GTAGTGCGTTGGG	.	168.0	61.0	36.0	0.0	.	Atlas-SNP
IRGC	56269	hgsc.bcm.edu	37	19	44223111	44223111	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	IRGC-70	NM_019612	exon2	c.A401G	p.Y134C	GCCGCTATGACTT	.	104.0	45.0	59.0	0.0	.	Atlas-SNP
ZNF227	7770	hgsc.bcm.edu	37	19	44739706	44739706	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF227-91	NM_182490	exon6	c.A1123G	p.T375A	GTCCACACTGAAG	.	61.0	5.0	56.0	0.0	.	Atlas-SNP
VASP	7408	hgsc.bcm.edu	37	19	46024603	46024603	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	VASP-514	NM_003370	exon4	c.G367A	p.A123T	CCCCCAGCACTTC	.	60.0	32.0	77.0	0.0	.	Atlas-SNP
ZC3H4	23211	hgsc.bcm.edu	37	19	47572589	47572589	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZC3H4-74	NM_015168	exon14	c.C2158T	p.H720Y	CGTAGTGCCCGTA	.	51.0	18.0	45.0	0.0	.	Atlas-SNP
DHX34	9704	hgsc.bcm.edu	37	19	47876940	47876940	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DHX34-231	NM_014681	exon9	c.C2047T	p.L683F	GCCAACCTTCGGC	.	134.0	44.0	80.0	0.0	.	Atlas-SNP
CARD8	22900	hgsc.bcm.edu	37	19	48734920	48734920	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CARD8-227	NM_001184902	exon8	c.A539T	p.Y180F	TACCTGTATCTGT	.	64.0	27.0	52.0	0.0	.	Atlas-SNP
CARD8	22900	hgsc.bcm.edu	37	19	48734921	48734921	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CARD8-227	NM_001184902	exon8	c.T538A	p.Y180N	ACCTGTATCTGTT	.	64.0	27.0	53.0	0.0	.	Atlas-SNP
KDELR1	10945	hgsc.bcm.edu	37	19	48894556	48894556	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KDELR1-90	NM_006801	exon1	c.G60A	p.L20L	TTTGAGCAGTAGC	.	85.0	41.0	63.0	0.0	.	Atlas-SNP
FGF21	26291	hgsc.bcm.edu	37	19	49261316	49261316	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FGF21-522	NM_019113	exon3	c.G469A	p.A157T	GACCCTGCACCCC	.	174.0	62.0	114.0	0.0	.	Atlas-SNP
PRR12	57479	hgsc.bcm.edu	37	19	50100497	50100497	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PRR12-70	NM_020719	exon4	c.G2905A	p.E969K	CCACCTGAGGACG	.	59.0	24.0	20.0	0.0	.	Atlas-SNP
TSKS	60385	hgsc.bcm.edu	37	19	50245268	50245268	+	Silent	SNP	C	C	T	rs201242813	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TSKS-154	NM_021733	exon9	c.G1371A	p.S457S	CAACTGCGACCCC	.	75.0	33.0	75.0	0.0	C|0.999;A|0.000	Atlas-SNP
VRK3	51231	hgsc.bcm.edu	37	19	50498494	50498494	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	VRK3-359	NM_001025778	exon7	c.G568A	p.A190T	GGATGGCCAGCAG	.	229.0	96.0	156.0	0.0	.	Atlas-SNP
ASPDH	554235	hgsc.bcm.edu	37	19	51015773	51015773	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ASPDH-90	NM_001024656	exon3	c.C182T	p.A61V	CTGTGGGCTGCAG	.	28.0	10.0	13.0	0.0	.	Atlas-SNP
SIGLEC9	27180	hgsc.bcm.edu	37	19	51630290	51630290	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SIGLEC9-91	NM_001198558	exon4	c.C752T	p.S251F	CAGTATCCACAGT	.	63.0	21.0	62.0	0.0	.	Atlas-SNP
SIGLEC12	89858	hgsc.bcm.edu	37	19	52003397	52003397	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SIGLEC12-96	NM_033329	exon1	c.C231T	p.A77A	TATATCGGCCCCT	.	320.0	120.0	286.0	0.0	.	Atlas-SNP
FPR3	2359	hgsc.bcm.edu	37	19	52327406	52327406	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FPR3-501	NM_002030	exon2	c.C405T	p.N135N	CCAGAACCATCGC	.	255.0	91.0	216.0	0.0	.	Atlas-SNP
ZNF415	55786	hgsc.bcm.edu	37	19	53612773	53612773	+	Silent	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF415-91	NM_001136038	exon4	c.T525A	p.V175V	TGGTGAAACTGAG	.	108.0	45.0	97.0	0.0	.	Atlas-SNP
NLRP2	55655	hgsc.bcm.edu	37	19	55494293	55494293	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NLRP2-120	NM_001174083	exon7	c.G1158A	p.K386K	TCTGAAGCTGCAG	.	334.0	130.0	192.0	0.0	.	Atlas-SNP
PPP6R1	22870	hgsc.bcm.edu	37	19	55742232	55742232	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PPP6R1-67	NM_014931	exon22	c.C2480T	p.T827I	ACAGAGGTAGAGG	.	50.0	21.0	18.0	0.0	.	Atlas-SNP
ZNF579	163033	hgsc.bcm.edu	37	19	56090309	56090309	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF579-90	NM_152600	exon2	c.C697T	p.L233L	AGCGCAGACACAG	.	63.0	27.0	7.0	0.0	.	Atlas-SNP
NLRP8	126205	hgsc.bcm.edu	37	19	56473553	56473553	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NLRP8-361	NM_176811	exon4	c.G2163C	p.K721N	TTTGAAGGCTCTC	.	142.0	75.0	115.0	0.0	.	Atlas-SNP
CLPP	8192	hgsc.bcm.edu	37	19	6361605	6361606	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CLPP-91	NM_006012	exon1	c.20_21insA	p.V7fs	.	.	47.0	24.0	21.0	0.0	.	Atlas-Indel
NCAN	1463	hgsc.bcm.edu	37	19	19338131	19338131	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NCAN-94	NM_004386	exon8	c.1701delG	p.W567fs	.	.	31.0	12.0	30.0	0.0	.	Atlas-Indel
DMKN	93099	hgsc.bcm.edu	37	19	36002410	36002412	+	In_Frame_Del	DEL	CTG	CTG	-	rs111543270		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	CTG	CTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DMKN-155	NM_001126058	exon5	c.820_822del	p.274_274del	.	.	84.0	13.0	81.0	0.0	CTG|0.500;-|0.500	Atlas-Indel
MLL4	8085	hgsc.bcm.edu	37	19	36210835	36210837	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	CTT	CTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MLL4-697	NM_014727	exon3	c.585_587del	p.195_196del	.	.	112.0	35.0	61.0	0.0	.	Atlas-Indel
MEGF8	1954	hgsc.bcm.edu	37	19	42838298	42838298	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MEGF8-23	NM_001410	exon3	c.490delT	p.W164fs	.	.	131.0	48.0	29.0	0.0	.	Atlas-Indel
IRGQ	126298	hgsc.bcm.edu	37	19	44096194	44096194	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	IRGQ-92	NM_001007561	exon3	c.1857delT	p.P619fs	.	.	251.0	123.0	90.0	0.0	.	Atlas-Indel
FCGRT	2217	hgsc.bcm.edu	37	19	50017380	50017380	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FCGRT-91	NM_001136019	exon3	c.314delT	p.L105fs	.	.	44.0	21.0	49.0	0.0	.	Atlas-Indel
SYDE1	85360	hgsc.bcm.edu	37	19	15221496	15221496	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SYDE1-92	NM_033025	exon4	c.1239delG	p.V413fs	.	.	128.0	32.0	36.0	0.0	.	Pindel
TEAD2	8463	hgsc.bcm.edu	37	19	49850473	49850473	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TEAD2-92	NM_001256658	exon9	c.893delA	p.H298fs	.	.	80.0	25.0	64.0	0.0	.	Pindel
POLD1	5424	hgsc.bcm.edu	37	19	50918843	50918844	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	POLD1-840	NM_001256849	exon21	c.2712_2713del	p.904_905del	.	.	241.0	57.0	63.0	0.0	.	Pindel
SDF4	51150	hgsc.bcm.edu	37	1	1153176	1153176	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SDF4-154	NM_016547	exon7	c.C921T	p.P307P	GAGTGTGGGCACG	.	31.0	15.0	21.0	0.0	.	Atlas-SNP
CPSF3L	54973	hgsc.bcm.edu	37	1	1247523	1247523	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CPSF3L-90	NM_001256460	exon17	c.C1525A	p.L509M	CCTTCAGGACGCT	.	56.0	21.0	22.0	0.0	.	Atlas-SNP
DVL1	1855	hgsc.bcm.edu	37	1	1275439	1275439	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DVL1-658	NM_004421	exon8	c.G888T	p.E296D	GCCGGGCTCGATG	.	143.0	63.0	84.0	0.0	.	Atlas-SNP
CALML6	163688	hgsc.bcm.edu	37	1	1848206	1848206	+	Missense_Mutation	SNP	A	A	T	rs200415259	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CALML6-90	NM_138705	exon4	c.A269T	p.N90I	TCTTCAACTGCGA	.	219.0	92.0	146.0	0.0	A|0.999;C|0.000	Atlas-SNP
PEX10	5192	hgsc.bcm.edu	37	1	2341850	2341850	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PEX10-90	NM_153818	exon2	c.G153A	p.L51L	TGAGAGCAGCTCA	.	208.0	98.0	151.0	0.0	.	Atlas-SNP
ARHGEF16	27237	hgsc.bcm.edu	37	1	3380095	3380095	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ARHGEF16-228	NM_014448	exon2	c.G447A	p.L149L	GAACCTGCGGAAC	.	354.0	161.0	239.0	0.0	.	Atlas-SNP
CCDC27	148870	hgsc.bcm.edu	37	1	3672052	3672052	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CCDC27-91	NM_152492	exon3	c.G474T	p.E158D	CGGAGAGATTGAC	.	199.0	82.0	132.0	0.0	.	Atlas-SNP
C1orf174	339448	hgsc.bcm.edu	37	1	3807605	3807605	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	C1orf174-68	NM_207356	exon3	c.A146C	p.K49T	GTGGCTTTGTGGG	.	45.0	28.0	34.0	0.0	.	Atlas-SNP
CAMTA1	23261	hgsc.bcm.edu	37	1	7721841	7721841	+	Silent	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CAMTA1-520	NM_015215	exon8	c.G720C	p.V240V	CTCGGTGGAACAG	.	525.0	235.0	324.0	0.0	.	Atlas-SNP
VAMP3	9341	hgsc.bcm.edu	37	1	7837354	7837354	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	VAMP3-90	NM_004781	exon3	c.G207A	p.R69R	GAAGAGGAAATAT	.	161.0	58.0	126.0	0.0	.	Atlas-SNP
PER3	8863	hgsc.bcm.edu	37	1	7887208	7887208	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PER3-93	NM_016831	exon17	c.C2195T	p.A732V	GGTCGGCCGGCTG	.	196.0	104.0	86.0	0.0	.	Atlas-SNP
ERRFI1	54206	hgsc.bcm.edu	37	1	8074279	8074279	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ERRFI1-91	NM_018948	exon4	c.C380G	p.T127S	GGAGGGGTGGAAG	.	86.0	48.0	65.0	0.0	.	Atlas-SNP
TMEM201	199953	hgsc.bcm.edu	37	1	9657097	9657097	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TMEM201-68	NM_001130924	exon3	c.G415A	p.A139T	GCCTTCGCTCCCC	.	308.0	112.0	150.0	0.0	.	Atlas-SNP
UBE4B	10277	hgsc.bcm.edu	37	1	10190785	10190785	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	UBE4B-229	NM_001105562	exon14	c.G1825A	p.E609K	GTGGTTGAAAAAT	.	123.0	47.0	130.0	0.0	.	Atlas-SNP
KIF1B	23095	hgsc.bcm.edu	37	1	10364624	10364624	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KIF1B-93	NM_183416	exon21	c.T3381C	p.C1127C	CCACTGTAGCCAG	.	362.0	169.0	276.0	1.0	.	Atlas-SNP
SPEN	23013	hgsc.bcm.edu	37	1	16174571	16174571	+	Silent	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SPEN-298	NM_015001	exon1	c.G9T	p.R3R	GGTCCGGGAAACC	.	221.0	99.0	82.0	0.0	.	Atlas-SNP
SPEN	23013	hgsc.bcm.edu	37	1	16174581	16174581	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SPEN-298	NM_015001	exon1	c.C19T	p.H7Y	ACCAGGCATCTCT	.	247.0	109.0	93.0	0.0	.	Atlas-SNP
RAP1GAP	5909	hgsc.bcm.edu	37	1	21940490	21940490	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RAP1GAP-245	NM_002885	exon8	c.G384A	p.R128R	CAGCAGCCGCAGG	.	121.0	61.0	111.0	0.0	.	Atlas-SNP
HNRNPR	10236	hgsc.bcm.edu	37	1	23636987	23636987	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HNRNPR-24	NM_001102399	exon10	c.A1568T	p.Q523L	AATTCCTGGTTGT	.	71.0	25.0	62.0	0.0	.	Atlas-SNP
MYOM3	127294	hgsc.bcm.edu	37	1	24417405	24417405	+	Silent	SNP	G	G	A	rs201898557		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MYOM3-93	NM_152372	exon12	c.C1314T	p.V438V	ACCTTCGACGAGG	.	195.0	78.0	145.0	0.0	G|0.999;A|0.001	Atlas-SNP
GRHL3	57822	hgsc.bcm.edu	37	1	24664169	24664169	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GRHL3-91	NM_198173	exon6	c.A730G	p.K244E	CACATCAAGTCAG	.	208.0	87.0	165.0	0.0	.	Atlas-SNP
STPG1	90529	hgsc.bcm.edu	37	1	24706214	24706214	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001199013	exon5	c.T391C	p.S131P	TGCTGGAACACGA	.	96.0	33.0	81.0	0.0	.	Atlas-SNP
SRRM1	10250	hgsc.bcm.edu	37	1	24975468	24975468	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SRRM1-93	NM_005839	exon4	c.G353A	p.G118E	TCGCGGGAATCCC	.	42.0	13.0	37.0	0.0	.	Atlas-SNP
GPR3	2827	hgsc.bcm.edu	37	1	27720657	27720657	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GPR3-91	NM_005281	exon2	c.G355A	p.A119T	GCAATGGCCTTTA	.	119.0	53.0	63.0	0.0	.	Atlas-SNP
AHDC1	27245	hgsc.bcm.edu	37	1	27877519	27877519	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	AHDC1-90	NM_001029882	exon6	c.C1108T	p.P370S	CGTGCGGTGAGCA	.	47.0	25.0	7.0	0.0	.	Atlas-SNP
HCRTR1	3061	hgsc.bcm.edu	37	1	32084894	32084894	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HCRTR1-523	NM_001525	exon3	c.A101G	p.Y34C	TCCGCTATCTGTG	.	132.0	66.0	97.0	0.0	.	Atlas-SNP
BAI2	576	hgsc.bcm.edu	37	1	32197006	32197006	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	BAI2-526	NM_001703	exon29	c.G3775A	p.V1259I	TGTTGACCTCCTT	.	199.0	91.0	120.0	0.0	.	Atlas-SNP
AGO3	192669	hgsc.bcm.edu	37	1	36437666	36437666	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_024852	exon4	c.T354A	p.D118E	AAAAGATCGACCT	.	273.0	113.0	231.0	0.0	.	Atlas-SNP
AGO3	192669	hgsc.bcm.edu	37	1	36437741	36437741	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_024852	exon4	c.G429A	p.R143R	AGGACGGACCTTG	.	324.0	94.0	264.0	0.0	.	Atlas-SNP
ERMAP	114625	hgsc.bcm.edu	37	1	43308843	43308843	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ERMAP-91	NM_001017922	exon12	c.C1368T	p.I456I	TATAATCCTGTCC	.	121.0	49.0	111.0	0.0	.	Atlas-SNP
SLC6A9	6536	hgsc.bcm.edu	37	1	44466854	44466854	+	Silent	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLC6A9-90	NM_201649	exon10	c.C1536A	p.G512G	GGGGATGCCCAGC	.	377.0	157.0	291.0	0.0	.	Atlas-SNP
SLC6A9	6536	hgsc.bcm.edu	37	1	44466855	44466855	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLC6A9-90	NM_201649	exon10	c.G1535C	p.G512A	GGGATGCCCAGCA	.	382.0	160.0	292.0	0.0	.	Atlas-SNP
PIK3R3	8503	hgsc.bcm.edu	37	1	46509521	46509521	+	Missense_Mutation	SNP	A	A	G	rs144541540		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PIK3R3-1309	NM_003629	exon10	c.T1210C	p.C404R	TCACACAGTGCTT	.	113.0	53.0	100.0	0.0	A|1.000;G|0.000	Atlas-SNP
EFCAB14	9813	hgsc.bcm.edu	37	1	47182080	47182080	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_014774	exon2	c.C221T	p.P74L	CAGAGCGGATAAC	.	264.0	107.0	238.0	0.0	.	Atlas-SNP
FOXD2	2306	hgsc.bcm.edu	37	1	47904233	47904233	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FOXD2-226	NM_004474	exon1	c.G426A	p.Q142Q	CCTGCAGAGCCCC	.	321.0	136.0	210.0	0.0	.	Atlas-SNP
DMRTA2	63950	hgsc.bcm.edu	37	1	50885264	50885264	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_032110	exon3	c.G702A	p.R234R	GCCGGGCCGCACC	.	109.0	50.0	18.0	0.0	.	Atlas-SNP
BTF3L4	91408	hgsc.bcm.edu	37	1	52552390	52552390	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	BTF3L4-135	NM_001243767	exon5	c.T235G	p.X79E	ATCTTGTAGAAAA	.	86.0	33.0	48.0	0.0	.	Atlas-SNP
HOOK1	51361	hgsc.bcm.edu	37	1	60312772	60312772	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HOOK1-154	NM_015888	exon10	c.C844T	p.L282L	AAGCAGCTAATCG	.	139.0	58.0	127.0	0.0	.	Atlas-SNP
EFCAB7	84455	hgsc.bcm.edu	37	1	63999139	63999139	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	EFCAB7-68	NM_032437	exon5	c.T501C	p.Y167Y	ATTATATATGACA	.	62.0	30.0	52.0	0.0	.	Atlas-SNP
ZNF326	284695	hgsc.bcm.edu	37	1	90486370	90486370	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF326-91	NM_182976	exon10	c.C1194T	p.H398H	TGATCACATGATG	.	167.0	60.0	186.0	0.0	.	Atlas-SNP
HFM1	164045	hgsc.bcm.edu	37	1	91790300	91790300	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HFM1-112	NM_001017975	exon21	c.T2359C	p.Y787H	TATAATACCAAGC	.	180.0	83.0	143.0	0.0	.	Atlas-SNP
KIAA1107	23285	hgsc.bcm.edu	37	1	92647016	92647016	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_015237	exon8	c.C2462T	p.S821F	CCTCCTCCGATGA	.	196.0	77.0	160.0	0.0	.	Atlas-SNP
HIAT1	64645	hgsc.bcm.edu	37	1	100527406	100527406	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HIAT1-90	NM_033055	exon5	c.T387C	p.V129V	TGCTGTTATCTCT	.	125.0	45.0	128.0	0.0	.	Atlas-SNP
SASS6	163786	hgsc.bcm.edu	37	1	100586978	100586978	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SASS6-70	NM_194292	exon5	c.G439A	p.V147M	TCTCCACATCATT	.	53.0	23.0	43.0	0.0	.	Atlas-SNP
VAV3	10451	hgsc.bcm.edu	37	1	108298065	108298065	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	VAV3-1339	NM_006113	exon12	c.T1157G	p.L386R	ATAGATAGCTGAA	.	69.0	19.0	83.0	0.0	.	Atlas-SNP
CELSR2	1952	hgsc.bcm.edu	37	1	109793092	109793092	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CELSR2-526	NM_001408	exon1	c.C391G	p.L131V	CTCACACTGCCCG	.	128.0	57.0	126.0	0.0	.	Atlas-SNP
GPR61	83873	hgsc.bcm.edu	37	1	110085867	110085867	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GPR61-91	NM_031936	exon2	c.A223G	p.K75E	CTCCGAAAATTTG	.	219.0	16.0	170.0	0.0	.	Atlas-SNP
LRIG2	9860	hgsc.bcm.edu	37	1	113666622	113666622	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LRIG2-229	NM_014813	exon18	c.C3097T	p.P1033S	AGAGAGCCAGACT	.	128.0	45.0	112.0	0.0	.	Atlas-SNP
MAGI3	260425	hgsc.bcm.edu	37	1	114189207	114189207	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MAGI3-524	NM_152900	exon12	c.C2098G	p.P700A	GGATCCCCAAAAT	.	210.0	93.0	169.0	0.0	.	Atlas-SNP
HIPK1	204851	hgsc.bcm.edu	37	1	114506014	114506014	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HIPK1-361	NM_198269	exon9	c.C987T	p.S329S	GGGAAGCTGTACA	.	176.0	70.0	191.0	0.0	.	Atlas-SNP
WARS2	10352	hgsc.bcm.edu	37	1	119683258	119683258	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	WARS2-90	NM_201263	exon1	c.C10T	p.H4Y	TTGAGTGCAGCGC	.	53.0	22.0	32.0	0.0	.	Atlas-SNP
PDE4DIP	9659	hgsc.bcm.edu	37	1	144871772	144871772	+	Silent	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PDE4DIP-663	NM_014644	exon32	c.C5190A	p.G1730G	ACAGCAGCCAAGG	.	151.0	38.0	148.0	0.0	.	Atlas-SNP
PIAS3	10401	hgsc.bcm.edu	37	1	145579296	145579296	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PIAS3-658	NM_006099	exon5	c.C633T	p.L211L	CAACCTCTTTGTC	.	52.0	27.0	56.0	0.0	.	Atlas-SNP
PRPF3	9129	hgsc.bcm.edu	37	1	150298336	150298336	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PRPF3-91	NM_004698	exon3	c.A273G	p.L91L	AGAGCTAAAGGTA	.	176.0	63.0	190.0	0.0	.	Atlas-SNP
GOLPH3L	55204	hgsc.bcm.edu	37	1	150636172	150636172	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GOLPH3L-91	NM_018178	exon3	c.C251T	p.A84V	CGCATGGCCAGCT	.	130.0	56.0	113.0	0.0	.	Atlas-SNP
GABPB2	126626	hgsc.bcm.edu	37	1	151065754	151065754	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GABPB2-90	NM_144618	exon4	c.G363T	p.E121D	CGTAGAGTTACTT	.	123.0	52.0	105.0	0.0	.	Atlas-SNP
RORC	6097	hgsc.bcm.edu	37	1	151787534	151787534	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RORC-227	NM_001001523	exon4	c.C603G	p.S201R	CAGCTGGCTGCCT	.	306.0	146.0	240.0	0.0	.	Atlas-SNP
RORC	6097	hgsc.bcm.edu	37	1	151789189	151789189	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RORC-227	NM_001001523	exon3	c.C186T	p.C62C	GTGCTGGCATCGG	.	188.0	95.0	117.0	0.0	.	Atlas-SNP
FLAD1	80308	hgsc.bcm.edu	37	1	154962713	154962713	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FLAD1-93	NM_025207	exon4	c.T1344A	p.F448L	ACAGTTTCTACAG	.	155.0	65.0	98.0	0.0	.	Atlas-SNP
ASH1L	55870	hgsc.bcm.edu	37	1	155452085	155452085	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ASH1L-234	NM_018489	exon3	c.G576A	p.T192T	AGATGGCGTTGCA	.	95.0	38.0	74.0	0.0	.	Atlas-SNP
SH2D2A	9047	hgsc.bcm.edu	37	1	156779155	156779155	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SH2D2A-90	NM_001161443	exon6	c.A758G	p.N253S	GGCTCATTGTAGA	.	83.0	26.0	73.0	0.0	.	Atlas-SNP
ARHGEF11	9826	hgsc.bcm.edu	37	1	156954154	156954154	+	Missense_Mutation	SNP	A	A	T	rs151017400	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ARHGEF11-233	NM_198236	exon3	c.T200A	p.V67D	ACCAGAACAATGC	.	229.0	92.0	188.0	0.0	A|1.000;C|0.000	Atlas-SNP
CD5L	922	hgsc.bcm.edu	37	1	157803262	157803262	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CD5L-91	NM_005894	exon5	c.C759T	p.C253C	CCCAGAGCAGAGG	.	55.0	30.0	52.0	0.0	.	Atlas-SNP
CD5L	922	hgsc.bcm.edu	37	1	157804424	157804424	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CD5L-91	NM_005894	exon4	c.A491G	p.Q164R	CCTGTCTGGCACA	.	90.0	32.0	84.0	0.0	.	Atlas-SNP
KIRREL	55243	hgsc.bcm.edu	37	1	158064671	158064671	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KIRREL-91	NM_018240	exon15	c.A2035G	p.T679A	GACACAACCAGCC	.	239.0	96.0	173.0	0.0	.	Atlas-SNP
KCNJ10	3766	hgsc.bcm.edu	37	1	160011970	160011970	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KCNJ10-91	NM_002241	exon2	c.C353T	p.A118V	AGGAAGGCTCCAG	.	134.0	55.0	96.0	0.0	.	Atlas-SNP
F11R	50848	hgsc.bcm.edu	37	1	160969185	160969185	+	Splice_Site	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	F11R-92	NM_016946	exon9	c.815+1G>A	.	CACTCACCCTTTC	.	195.0	71.0	196.0	0.0	.	Atlas-SNP
TSTD1	100131187	hgsc.bcm.edu	37	1	161007709	161007709	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001113207	exon3	c.A290T	p.Y97F	CCAGTGTATCCAA	.	117.0	48.0	72.0	0.0	.	Atlas-SNP
USP21	27005	hgsc.bcm.edu	37	1	161130942	161130942	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	USP21-660	NM_012475	exon2	c.G512A	p.S171N	TGTTCAGCATACG	.	91.0	43.0	64.0	0.0	.	Atlas-SNP
NDUFS2	4720	hgsc.bcm.edu	37	1	161173239	161173239	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NDUFS2-91	NM_004550	exon3	c.G108T	p.Q36H	TCGGCAGTGGCAG	.	148.0	10.0	106.0	0.0	.	Atlas-SNP
UHMK1	127933	hgsc.bcm.edu	37	1	162467903	162467903	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	UHMK1-358	NM_175866	exon1	c.A113T	p.Y38F	CGGTGTATCGGGT	.	194.0	72.0	58.0	0.0	.	Atlas-SNP
FAM78B	149297	hgsc.bcm.edu	37	1	166135378	166135378	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FAM78B-91	NM_001017961	exon1	c.G108A	p.E36E	CGAGGTCTCCTCG	.	194.0	76.0	135.0	0.0	.	Atlas-SNP
SELP	6403	hgsc.bcm.edu	37	1	169578907	169578907	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SELP-94	NM_003005	exon8	c.G1168C	p.E390Q	GACTCTCCAGCGG	.	102.0	50.0	74.0	0.0	.	Atlas-SNP
ACBD6	84320	hgsc.bcm.edu	37	1	180471390	180471390	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ACBD6-91	NM_032360	exon1	c.A12G	p.S4S	CAGGAATGATGAA	.	274.0	132.0	243.0	1.0	.	Atlas-SNP
KIAA1614	57710	hgsc.bcm.edu	37	1	180904988	180904988	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KIAA1614-26	NM_020950	exon5	c.G1943A	p.R648Q	GACTGCGACTGCG	.	158.0	70.0	56.0	0.0	.	Atlas-SNP
CACNA1E	777	hgsc.bcm.edu	37	1	181762806	181762806	+	Silent	SNP	A	A	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CACNA1E-95	NM_001205293	exon45	c.A5904C	p.P1968P	GGAGCCAGAGGTT	.	150.0	55.0	120.0	0.0	.	Atlas-SNP
ZNF648	127665	hgsc.bcm.edu	37	1	182026897	182026897	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF648-91	NM_001009992	exon2	c.C249G	p.D83E	GGAGGAGTCAGAG	.	148.0	77.0	117.0	0.0	.	Atlas-SNP
PLA2G4A	5321	hgsc.bcm.edu	37	1	186908147	186908147	+	Missense_Mutation	SNP	T	T	C	rs201251994	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PLA2G4A-721	NM_024420	exon9	c.T703C	p.S235P	TATATGTCAACCT	.	61.0	29.0	70.0	0.0	T|0.999;A|0.001	Atlas-SNP
B3GALT2	8707	hgsc.bcm.edu	37	1	193149518	193149518	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	B3GALT2-91	NM_003783	exon2	c.A1175G	p.K392R	CAGTATTTTATCA	.	140.0	65.0	139.0	0.0	.	Atlas-SNP
RCOR3	55758	hgsc.bcm.edu	37	1	211462519	211462519	+	Splice_Site	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RCOR3-91	NM_001136224	exon8	c.721-1G>A	.	CTCTTAGGGTAAT	.	204.0	81.0	191.0	0.0	.	Atlas-SNP
VASH2	79805	hgsc.bcm.edu	37	1	213125126	213125126	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	VASH2-90	NM_001136474	exon3	c.T47C	p.V16A	AAATGGTGGGCGC	.	65.0	30.0	66.0	0.0	.	Atlas-SNP
C1orf65	164127	hgsc.bcm.edu	37	1	223568189	223568189	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	C1orf65-91	NM_152610	exon1	c.C1372T	p.R458W	TTCCAGCGGTCCC	.	268.0	110.0	193.0	0.0	.	Atlas-SNP
CAPN2	824	hgsc.bcm.edu	37	1	223947169	223947169	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CAPN2-523	NM_001748	exon12	c.G1515C	p.K505N	TGAAAAGAAAGCT	.	61.0	22.0	42.0	0.0	.	Atlas-SNP
OBSCN	84033	hgsc.bcm.edu	37	1	228475560	228475560	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	OBSCN-403	NM_001271223	exon41	c.C10997T	p.A3666V	AGGGTGCCATGCT	.	214.0	16.0	180.0	0.0	.	Atlas-SNP
CAPN9	10753	hgsc.bcm.edu	37	1	230921739	230921739	+	Silent	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CAPN9-91	NM_016452	exon11	c.A1416T	p.G472G	GGATGGAAATGTA	.	275.0	121.0	200.0	0.0	.	Atlas-SNP
TTC13	79573	hgsc.bcm.edu	37	1	231079568	231079568	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TTC13-92	NM_024525	exon6	c.T656C	p.F219S	TGCTCAAATACCT	.	43.0	20.0	50.0	0.0	.	Atlas-SNP
GNPAT	8443	hgsc.bcm.edu	37	1	231396359	231396359	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GNPAT-156	NM_014236	exon3	c.C368T	p.A123V	TTTGTGCCTTCAC	.	53.0	22.0	51.0	0.0	.	Atlas-SNP
EXOC8	149371	hgsc.bcm.edu	37	1	231471391	231471391	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	EXOC8-91	NM_175876	exon1	c.G2101A	p.A701T	GCTTGGCAGGTTT	.	139.0	62.0	119.0	0.0	.	Atlas-SNP
OR14I1	401994	hgsc.bcm.edu	37	1	248844883	248844883	+	Silent	SNP	G	G	A	rs201585486	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	OR14I1-46	NM_001004734	exon1	c.C723T	p.P241P	GAGCTGGGGGGAG	.	141.0	86.0	118.0	0.0	G|0.999;C|0.001	Atlas-SNP
SH3BP5L	80851	hgsc.bcm.edu	37	1	249106288	249106288	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SH3BP5L-90	NM_030645	exon7	c.T993C	p.D331D	CAGGGTATCGGTG	.	119.0	50.0	39.0	0.0	.	Atlas-SNP
AGRN	375790	hgsc.bcm.edu	37	1	979279	979279	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	AGRN-136	NM_198576	exon10	c.1874delA	p.H625fs	.	.	73.0	24.0	12.0	0.0	.	Atlas-Indel
RPL22	6146	hgsc.bcm.edu	37	1	6257785	6257785	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RPL22-650	NM_000983	exon2	c.45delG	p.K15fs	.	.	43.0	20.0	24.0	0.0	.	Atlas-Indel
DHRS3	9249	hgsc.bcm.edu	37	1	12632790	12632792	+	In_Frame_Del	DEL	GGA	GGA	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	GGA	GGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DHRS3-91	NM_004753	exon5	c.789_791del	p.263_264del	.	.	99.0	34.0	82.0	0.0	.	Atlas-Indel
PIK3R3	8503	hgsc.bcm.edu	37	1	46509408	46509410	+	In_Frame_Del	DEL	GTT	GTT	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	GTT	GTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PIK3R3-1309	NM_001114172	exon11	c.1322_1324del	p.441_442del	.	.	167.0	74.0	142.0	0.0	.	Atlas-Indel
LRRC42	115353	hgsc.bcm.edu	37	1	54423901	54423902	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LRRC42-90	NM_052940	exon3	c.553_554insT	p.L185fs	.	.	167.0	52.0	120.0	0.0	.	Atlas-Indel
KIAA1324	57535	hgsc.bcm.edu	37	1	109740206	109740206	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KIAA1324-157	NM_001267048	exon14	c.1970delT	p.I657fs	.	.	102.0	49.0	82.0	0.0	.	Atlas-Indel
ALX3	257	hgsc.bcm.edu	37	1	110607490	110607490	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ALX3-90	NM_006492	exon2	c.314delA	p.Q105fs	.	.	66.0	26.0	45.0	0.0	.	Atlas-Indel
UBAP2L	9898	hgsc.bcm.edu	37	1	154224069	154224069	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	UBAP2L-91	NM_014847	exon14	c.1603delA	p.T535fs	.	.	63.0	14.0	60.0	0.0	.	Atlas-Indel
IGSF9	57549	hgsc.bcm.edu	37	1	159898610	159898610	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	IGSF9-156	NM_020789	exon19	c.2521delC	p.P841fs	.	.	36.0	12.0	36.0	0.0	.	Atlas-Indel
ASPM	259266	hgsc.bcm.edu	37	1	197073232	197073232	+	Frame_Shift_Del	DEL	T	T	-	rs199422167		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ASPM-615	NM_018136	exon18	c.5150delT	p.I1717fs	.	.	53.0	20.0	40.0	0.0	.	Atlas-Indel
CAMSAP2	23271	hgsc.bcm.edu	37	1	200827020	200827020	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_203459	exon17	c.4269delT	p.T1423fs	.	.	84.0	36.0	83.0	0.0	.	Atlas-Indel
ARV1	64801	hgsc.bcm.edu	37	1	231131567	231131567	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ARV1-154	NM_022786	exon4	c.509delC	p.A170fs	.	.	63.0	25.0	50.0	0.0	.	Atlas-Indel
FMN2	56776	hgsc.bcm.edu	37	1	240255872	240255872	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FMN2-145	NM_020066	exon1	c.462delC	p.V154fs	.	.	148.0	68.0	128.0	0.0	.	Atlas-Indel
PPCS	79717	hgsc.bcm.edu	37	1	42922266	42922266	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PPCS-90	NM_024664	exon1	c.29delT	p.F10fs	.	.	90.0	20.0	12.0	0.0	.	Pindel
OR10Z1	128368	hgsc.bcm.edu	37	1	158576487	158576487	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	OR10Z1-70	NM_001004478	exon1	c.258delT	p.A86fs	.	.	136.0	36.0	106.0	0.0	.	Pindel
SNRPE	6635	hgsc.bcm.edu	37	1	203832839	203832839	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SNRPE-514	NM_003094	exon3	c.129delA	p.I43fs	.	.	321.0	76.0	316.0	0.0	.	Pindel
MACF1	23499	hgsc.bcm.edu	37	1	39751304	39751305	+	Frame_Shift_Ins	INS	-	-	GGTA	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MACF1-165	NM_012090	exon15	c.1397_1398insGGTA	p.P466fs	.	.	218.0	50.0	182.0	0.0	.	Pindel
DPYD	1806	hgsc.bcm.edu	37	1	98165042	98165043	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DPYD-278	NM_000110	exon6	c.545_546insA	p.M182fs	.	.	102.0	29.0	96.0	0.0	.	Pindel
AKNAD1	254268	hgsc.bcm.edu	37	1	109369885	109369886	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	AKNAD1-93	NM_152763	exon11	c.1878_1879insA	p.N626fs	.	.	97.0	27.0	94.0	0.0	.	Pindel
SYCP1	6847	hgsc.bcm.edu	37	1	115537600	115537601	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SYCP1-91	NM_003176	exon32	c.2891_2892insA	p.R964fs	.	.	91.0	18.0	69.0	0.0	.	Pindel
ATRN	8455	hgsc.bcm.edu	37	20	3546042	3546042	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ATRN-154	NM_139322	exon11	c.G1834T	p.V612F	CATGATGTCAACA	.	44.0	28.0	80.0	0.0	.	Atlas-SNP
SEL1L2	80343	hgsc.bcm.edu	37	20	13850197	13850197	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SEL1L2-70	NM_001271539	exon14	c.G1207A	p.E403K	CTTTTTCCGCAGC	.	91.0	70.0	124.0	0.0	.	Atlas-SNP
FAM83C	128876	hgsc.bcm.edu	37	20	33874418	33874418	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FAM83C-92	NM_178468	exon4	c.C2164A	p.L722M	GACCCAGGGTCAG	.	193.0	21.0	172.0	0.0	.	Atlas-SNP
NDRG3	57446	hgsc.bcm.edu	37	20	35288763	35288763	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NDRG3-91	NM_032013	exon13	c.C835T	p.P279S	TTATAGGGTTCAG	.	99.0	24.0	51.0	0.0	.	Atlas-SNP
NDRG3	57446	hgsc.bcm.edu	37	20	35350111	35350111	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NDRG3-91	NM_032013	exon2	c.A28G	p.T10A	TCTCTGTGAGCTG	.	100.0	6.0	72.0	0.0	.	Atlas-SNP
RPN2	6185	hgsc.bcm.edu	37	20	35833294	35833294	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RPN2-93	NM_002951	exon6	c.C680T	p.S227F	AGCCATCCATTAA	.	158.0	66.0	115.0	0.0	.	Atlas-SNP
LBP	3929	hgsc.bcm.edu	37	20	36997687	36997687	+	Missense_Mutation	SNP	C	C	T	rs146665734	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LBP-91	NM_004139	exon10	c.C1030T	p.P344S	TCAGTGCCCTCTG	.	86.0	35.0	59.0	0.0	C|1.000;T|0.000	Atlas-SNP
ZHX3	23051	hgsc.bcm.edu	37	20	39830791	39830791	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZHX3-93	NM_015035	exon3	c.G2766T	p.E922D	AGACACCTCTGAA	.	164.0	69.0	129.0	0.0	.	Atlas-SNP
PTPRT	11122	hgsc.bcm.edu	37	20	40713472	40713472	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PTPRT-664	NM_133170	exon30	c.A4043C	p.Y1348S	ATACGATAACCAT	.	169.0	78.0	136.0	0.0	.	Atlas-SNP
WISP2	8839	hgsc.bcm.edu	37	20	43348580	43348580	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	WISP2-130	NM_003881	exon2	c.C103A	p.P35T	CCCTGGCCACCTC	.	117.0	52.0	98.0	0.0	.	Atlas-SNP
KCNS1	3787	hgsc.bcm.edu	37	20	43726370	43726370	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KCNS1-90	NM_002251	exon4	c.G1043A	p.R348H	AAGATGCGCATGA	.	166.0	87.0	121.0	0.0	.	Atlas-SNP
ZMYND8	23613	hgsc.bcm.edu	37	20	45865241	45865241	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZMYND8-252	NM_012408	exon16	c.C2547T	p.I849I	CTGTGTGATCTCC	.	139.0	64.0	108.0	0.0	.	Atlas-SNP
ADNP	23394	hgsc.bcm.edu	37	20	49508387	49508387	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ADNP-92	NM_015339	exon5	c.G2864C	p.S955T	ACCTCACTATCAG	.	257.0	97.0	247.0	0.0	.	Atlas-SNP
GNAS	2778	hgsc.bcm.edu	37	20	57429537	57429537	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GNAS-4767	NM_001077490	exon1	c.C1030A	p.Q344K	CCGGGGCAACCCC	.	53.0	22.0	24.0	0.0	.	Atlas-SNP
SS18L1	26039	hgsc.bcm.edu	37	20	60738545	60738545	+	Silent	SNP	G	G	A	rs149920292	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SS18L1-660	NM_198935	exon6	c.G588A	p.S196S	CACGTCGCACTAC	.	169.0	73.0	61.0	0.0	G|0.999;A|0.001	Atlas-SNP
CD93	22918	hgsc.bcm.edu	37	20	23065518	23065518	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CD93-153	NM_012072	exon1	c.1313delT	p.L438fs	.	.	56.0	43.0	84.0	0.0	.	Atlas-Indel
DLGAP4	22839	hgsc.bcm.edu	37	20	35128865	35128866	+	In_Frame_Ins	INS	-	-	CTA	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DLGAP4-94	NM_001042486	exon4	c.242_243insCTA	p.S81delinsSY	.	.	219.0	43.0	82.0	0.0	.	Atlas-Indel
LAMA5	3911	hgsc.bcm.edu	37	20	60887715	60887715	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LAMA5-93	NM_005560	exon67	c.9201delC	p.G3067fs	.	.	245.0	83.0	65.0	0.0	.	Atlas-Indel
SRMS	6725	hgsc.bcm.edu	37	20	62178771	62178773	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	AGA	AGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SRMS-521	NM_080823	exon1	c.45_47del	p.15_16del	.	.	130.0	44.0	29.0	0.0	.	Atlas-Indel
FASTKD5	60493	hgsc.bcm.edu	37	20	3128001	3128001	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FASTKD5-90	NM_021826	exon2	c.1717delC	p.P573fs	.	.	61.0	29.0	80.0	0.0	.	Pindel
LIPI	149998	hgsc.bcm.edu	37	21	15481359	15481359	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LIPI-70	NM_198996	exon10	c.G1401A	p.E467E	CACTTCCTCTCTG	.	59.0	28.0	72.0	0.0	.	Atlas-SNP
NRIP1	8204	hgsc.bcm.edu	37	21	16337877	16337877	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NRIP1-186	NM_003489	exon4	c.T2637A	p.D879E	TGCAGCATCAACA	.	71.0	37.0	69.0	0.0	.	Atlas-SNP
ADAMTS1	9510	hgsc.bcm.edu	37	21	28217129	28217129	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ADAMTS1-272	NM_006988	exon1	c.G145A	p.A49T	CGAGTGCGTCCGA	.	87.0	41.0	6.0	0.0	.	Atlas-SNP
TIAM1	7074	hgsc.bcm.edu	37	21	32585718	32585718	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TIAM1-724	NM_003253	exon11	c.G2213A	p.G738D	ACCTTGCCATCTG	.	78.0	36.0	71.0	0.0	.	Atlas-SNP
SCAF4	57466	hgsc.bcm.edu	37	21	33063193	33063193	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SCAF4-90	NM_001145444	exon14	c.A1757T	p.Y586F	GGAATATAAGTAA	.	170.0	65.0	158.0	0.0	.	Atlas-SNP
SCAF4	57466	hgsc.bcm.edu	37	21	33068463	33068463	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SCAF4-90	NM_001145444	exon8	c.G986A	p.R329Q	ATCATTCGTGGCT	.	135.0	48.0	112.0	0.0	.	Atlas-SNP
ITSN1	6453	hgsc.bcm.edu	37	21	35166743	35166743	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ITSN1-94	NM_001001132	exon17	c.A1923G	p.E641E	CATAGAATTAGAA	.	220.0	111.0	154.0	0.0	.	Atlas-SNP
UMODL1	89766	hgsc.bcm.edu	37	21	43510406	43510406	+	Splice_Site	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	UMODL1-93	NM_001199527	exon6	c.575-2A>T	.	CCCTGTAGATGTC	.	162.0	81.0	144.0	0.0	.	Atlas-SNP
UMODL1	89766	hgsc.bcm.edu	37	21	43531012	43531012	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	UMODL1-93	NM_001199527	exon11	c.C1464T	p.G488G	CATGGGCGGTGGA	.	293.0	145.0	241.0	0.0	.	Atlas-SNP
UBASH3A	53347	hgsc.bcm.edu	37	21	43864737	43864737	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	UBASH3A-93	NM_001001895	exon13	c.C1718T	p.A573V	ATTTTGCCCAACT	.	86.0	39.0	61.0	0.0	.	Atlas-SNP
PFKL	5211	hgsc.bcm.edu	37	21	45744513	45744513	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PFKL-251	NM_002626	exon17	c.A1790G	p.D597G	TCGAGGACCCTTT	.	124.0	53.0	80.0	0.0	.	Atlas-SNP
KRTAP10-2	386679	hgsc.bcm.edu	37	21	45970771	45970771	+	Missense_Mutation	SNP	C	C	T	rs200215960	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KRTAP10-2-135	NM_198693	exon1	c.G571A	p.V191I	AGCAGACAGGCTT	.	171.0	23.0	137.0	0.0	C|0.956;T|0.044	Atlas-SNP
KRTAP10-2	386679	hgsc.bcm.edu	37	21	45970772	45970772	+	Silent	SNP	A	A	G	rs76021731	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KRTAP10-2-135	NM_198693	exon1	c.T570C	p.P190P	GCAGACAGGCTTG	.	166.0	33.0	133.0	0.0	A|0.908;G|0.092	Atlas-SNP
KRTAP10-2	386679	hgsc.bcm.edu	37	21	45970774	45970774	+	Missense_Mutation	SNP	G	G	A	rs76536096	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KRTAP10-2-135	NM_198693	exon1	c.C568T	p.P190S	AGACAGGCTTGCA	.	170.0	32.0	134.0	0.0	G|0.917;A|0.083	Atlas-SNP
KRTAP10-7	386675	hgsc.bcm.edu	37	21	46020976	46020976	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_198689	exon2	c.C440T	p.T147I	GCTGCACCTCCTC	.	439.0	170.0	428.0	1.0	.	Atlas-SNP
POFUT2	23275	hgsc.bcm.edu	37	21	46689778	46689778	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	POFUT2-90	NM_133635	exon7	c.G988T	p.V330L	TGGCCACAAACAC	.	97.0	35.0	95.0	0.0	.	Atlas-SNP
PCBP3	54039	hgsc.bcm.edu	37	21	47321002	47321002	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PCBP3-227	NM_001130141	exon5	c.C314T	p.A105V	CCTTTGCCATGAT	.	75.0	28.0	60.0	0.0	.	Atlas-SNP
KRTAP10-2	386679	hgsc.bcm.edu	37	21	45971060	45971060	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KRTAP10-2-135	NM_198693	exon1	c.283delT	p.C95fs	.	.	261.0	86.0	110.0	0.0	.	Atlas-Indel
COL18A1	80781	hgsc.bcm.edu	37	21	46917558	46917559	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	COL18A1-90	NM_130445	exon32	c.2666_2667insC	p.G889fs	.	.	113.0	37.0	82.0	0.0	.	Atlas-Indel
CCT8L2	150160	hgsc.bcm.edu	37	22	17073304	17073304	+	Missense_Mutation	SNP	A	A	G	rs140831516	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CCT8L2-69	NM_014406	exon1	c.T137C	p.V46A	CGGATGACACTGG	.	80.0	30.0	61.0	0.0	A|1.000;T|0.000	Atlas-SNP
GAB4	128954	hgsc.bcm.edu	37	22	17472963	17472963	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GAB4-91	NM_001037814	exon2	c.C278A	p.T93N	TTGATGGTGCGCA	.	186.0	80.0	169.0	0.0	.	Atlas-SNP
MICAL3	57553	hgsc.bcm.edu	37	22	18301894	18301894	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MICAL3-68	NM_015241	exon26	c.G3533T	p.G1178V	TGGGGCCCCTACA	.	57.0	27.0	40.0	0.0	.	Atlas-SNP
TUBA8	51807	hgsc.bcm.edu	37	22	18609562	18609562	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TUBA8-90	NM_001193414	exon4	c.G619A	p.A207T	ACCTACGCGCCCA	.	260.0	20.0	171.0	0.0	.	Atlas-SNP
KLHL22	84861	hgsc.bcm.edu	37	22	20812147	20812147	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KLHL22-278	NM_032775	exon5	c.G1253A	p.R418H	TCGTAGCGCTCCA	.	154.0	69.0	161.0	0.0	.	Atlas-SNP
PI4KA	5297	hgsc.bcm.edu	37	22	21172828	21172828	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PI4KA-454	NM_058004	exon7	c.G799T	p.E267X	CGCGTTCAGGGCT	.	54.0	16.0	55.0	0.0	.	Atlas-SNP
AIFM3	150209	hgsc.bcm.edu	37	22	21334397	21334397	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	AIFM3-280	NM_001146288	exon19	c.C1759T	p.R587W	GCCATCCGGAAGC	.	69.0	28.0	45.0	0.0	.	Atlas-SNP
CCDC116	164592	hgsc.bcm.edu	37	22	21988695	21988695	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CCDC116-92	NM_152612	exon3	c.A457T	p.S153C	CCATCCAGCTCCA	.	127.0	60.0	110.0	0.0	.	Atlas-SNP
CCDC116	164592	hgsc.bcm.edu	37	22	21989306	21989306	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CCDC116-92	NM_152612	exon4	c.C954T	p.S318S	GGTCAGCCAGGCT	.	144.0	63.0	104.0	0.0	.	Atlas-SNP
BCR	613	hgsc.bcm.edu	37	22	23637231	23637231	+	Silent	SNP	G	G	A	rs200598253		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	BCR-1349	NM_004327	exon16	c.G2901A	p.E967E	GCTGGAGGGCTCC	.	254.0	95.0	192.0	0.0	G|1.000;A|0.000	Atlas-SNP
MIF	4282	hgsc.bcm.edu	37	22	24236679	24236679	+	Silent	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MIF-514	NM_002415	exon1	c.A18T	p.V6V	CATCGTAAACACC	.	357.0	144.0	170.0	0.0	.	Atlas-SNP
MIF	4282	hgsc.bcm.edu	37	22	24236682	24236682	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MIF-514	NM_002415	exon1	c.C21A	p.N7K	CGTAAACACCAAC	.	354.0	145.0	168.0	0.0	.	Atlas-SNP
CRYBB3	1417	hgsc.bcm.edu	37	22	25601272	25601272	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CRYBB3-90	NM_004076	exon5	c.G413A	p.G138D	TGCCCAGCCTGTG	.	279.0	127.0	227.0	0.0	.	Atlas-SNP
LIF	3976	hgsc.bcm.edu	37	22	30639991	30639991	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LIF-650	NM_001257135	exon2	c.G79A	p.D27N	GTCCGTCACGTTG	.	146.0	65.0	108.0	0.0	.	Atlas-SNP
MCM5	4174	hgsc.bcm.edu	37	22	35815946	35815946	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MCM5-228	NM_006739	exon14	c.C1773T	p.S591S	GCGGAGCGGGGCC	.	384.0	162.0	202.0	0.0	.	Atlas-SNP
APOL6	80830	hgsc.bcm.edu	37	22	36055125	36055125	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	APOL6-90	NM_030641	exon3	c.T514A	p.Y172N	ATTATCTATAATC	.	68.0	35.0	55.0	0.0	.	Atlas-SNP
FOXRED2	80020	hgsc.bcm.edu	37	22	36902258	36902258	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FOXRED2-92	NM_001102371	exon2	c.G212A	p.R71H	GGGTAGCGTGTGA	.	166.0	68.0	104.0	0.0	.	Atlas-SNP
TEX33	339669	hgsc.bcm.edu	37	22	37398216	37398216	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001163857	exon3	c.C151A	p.P51T	GCAGGGGCTGTGG	.	94.0	43.0	80.0	0.0	.	Atlas-SNP
CARD10	29775	hgsc.bcm.edu	37	22	37891531	37891531	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CARD10-662	NM_014550	exon15	c.G2366A	p.R789H	TTACTGCGGGGGC	.	42.0	19.0	41.0	0.0	.	Atlas-SNP
GCAT	23464	hgsc.bcm.edu	37	22	38205970	38205970	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GCAT-90	NM_001171690	exon2	c.A211G	p.I71V	ACTGTCATCTTTC	.	142.0	61.0	116.0	0.0	.	Atlas-SNP
GALR3	8484	hgsc.bcm.edu	37	22	38221167	38221167	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GALR3-90	NM_003614	exon2	c.G797A	p.S266N	CCTTCAGCCCGGC	.	87.0	35.0	15.0	0.0	.	Atlas-SNP
L3MBTL2	83746	hgsc.bcm.edu	37	22	41621937	41621937	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	L3MBTL2-92	NM_031488	exon12	c.C1496T	p.P499L	TCACACCGCCAAA	.	87.0	35.0	81.0	0.0	.	Atlas-SNP
CHADL	150356	hgsc.bcm.edu	37	22	41631316	41631316	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CHADL-68	NM_138481	exon5	c.G2095T	p.A699S	AGGTGGCCCCCAC	.	38.0	16.0	16.0	0.0	.	Atlas-SNP
FAM109B	150368	hgsc.bcm.edu	37	22	42473559	42473559	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FAM109B-90	NM_001002034	exon3	c.G262A	p.A88T	GCCTTTGCCATCT	.	110.0	46.0	79.0	0.0	.	Atlas-SNP
PKDREJ	10343	hgsc.bcm.edu	37	22	46657944	46657944	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PKDREJ-156	NM_006071	exon1	c.G1276A	p.D426N	CGTGGTCGCCTTT	.	140.0	73.0	111.0	0.0	.	Atlas-SNP
PKDREJ	10343	hgsc.bcm.edu	37	22	46658470	46658470	+	Silent	SNP	C	C	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PKDREJ-156	NM_006071	exon1	c.G750C	p.P250P	CGCGGCCGGGCAG	.	175.0	79.0	15.0	0.0	.	Atlas-SNP
CELSR1	9620	hgsc.bcm.edu	37	22	46835094	46835094	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CELSR1-525	NM_014246	exon3	c.C4398T	p.I1466I	GAGGGAGATGGTG	.	156.0	59.0	122.0	0.0	.	Atlas-SNP
TRABD	80305	hgsc.bcm.edu	37	22	50636363	50636363	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TRABD-90	NM_025204	exon8	c.C783T	p.V261V	CGACGTCTACCTA	.	144.0	69.0	62.0	0.0	.	Atlas-SNP
MAPK11	5600	hgsc.bcm.edu	37	22	50705599	50705599	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MAPK11-1402	NM_002751	exon6	c.T452C	p.L151P	GGCTTCAGGTCCT	.	146.0	55.0	51.0	0.0	.	Atlas-SNP
SHANK3	85358	hgsc.bcm.edu	37	22	51160574	51160574	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SHANK3-69	NM_033517	exon21	c.C4271T	p.S1424L	AGTCCTCGGACAG	.	71.0	30.0	18.0	0.0	.	Atlas-SNP
HIRA	7290	hgsc.bcm.edu	37	22	19373067	19373067	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HIRA-91	NM_003325	exon12	c.1307delA	p.E436fs	.	.	143.0	60.0	123.0	0.0	.	Atlas-Indel
TRMT2A	27037	hgsc.bcm.edu	37	22	20100332	20100332	+	Frame_Shift_Del	DEL	G	G	-	rs34592023		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TRMT2A-153	NM_001257994	exon12	c.1655delT	p.L552fs	.	.	26.0	11.0	25.0	0.0	.	Atlas-Indel
DNAJB7	150353	hgsc.bcm.edu	37	22	41257875	41257877	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	CTT	CTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DNAJB7-227	NM_145174	exon1	c.123_125del	p.41_42del	.	.	49.0	17.0	58.0	0.0	.	Atlas-Indel
MEI1	150365	hgsc.bcm.edu	37	22	42099452	42099453	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MEI1-70	NM_152513	exon2	c.292_293insT	p.L98fs	.	.	111.0	44.0	86.0	0.0	.	Atlas-Indel
A4GALT	53947	hgsc.bcm.edu	37	22	43089757	43089757	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	A4GALT-90	NM_017436	exon3	c.202delA	p.T68fs	.	.	35.0	17.0	19.0	0.0	.	Atlas-Indel
HIC2	23119	hgsc.bcm.edu	37	22	21799659	21799659	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HIC2-703	NM_015094	exon3	c.474delG	p.R158fs	.	.	42.0	11.0	9.0	0.0	.	Pindel
MYT1L	23040	hgsc.bcm.edu	37	2	1983497	1983497	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MYT1L-95	NM_015025	exon6	c.G53A	p.R18Q	ATACCTCGAACCC	.	108.0	61.0	63.0	0.0	.	Atlas-SNP
TSSC1	7260	hgsc.bcm.edu	37	2	3193197	3193197	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TSSC1-90	NM_003310	exon9	c.G1072A	p.A358T	GGTCAGCCGAGGA	.	289.0	140.0	217.0	0.0	.	Atlas-SNP
SMC6	79677	hgsc.bcm.edu	37	2	17906608	17906608	+	Silent	SNP	C	C	T	rs144198428	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SMC6-292	NM_001142286	exon9	c.G642A	p.T214T	AAGTTGCGTTGCT	.	32.0	6.0	31.0	0.0	C|0.999;T|0.001	Atlas-SNP
APOB	338	hgsc.bcm.edu	37	2	21233246	21233246	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	APOB-175	NM_000384	exon26	c.T6494A	p.I2165N	AAGTTGATTTTGG	.	37.0	15.0	39.0	0.0	.	Atlas-SNP
DPYSL5	56896	hgsc.bcm.edu	37	2	27121385	27121385	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DPYSL5-92	NM_001253723	exon2	c.C18T	p.A6A	CTCAGCCAGCGTG	.	513.0	241.0	395.0	1.0	.	Atlas-SNP
CAPN14	440854	hgsc.bcm.edu	37	2	31409307	31409307	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001145122	exon16	c.G1632C	p.Q544H	GGTCATCTGGTTC	.	161.0	72.0	113.0	0.0	.	Atlas-SNP
STRN	6801	hgsc.bcm.edu	37	2	37096725	37096725	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	STRN-91	NM_003162	exon11	c.A1471T	p.N491Y	GTAAATTCCACAT	.	95.0	44.0	72.0	0.0	.	Atlas-SNP
ATP6V1E2	90423	hgsc.bcm.edu	37	2	46739273	46739273	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ATP6V1E2-70	NM_080653	exon2	c.C578T	p.S193L	GTATTTGAAACCT	.	111.0	41.0	80.0	0.0	.	Atlas-SNP
PSME4	23198	hgsc.bcm.edu	37	2	54152700	54152700	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PSME4-275	NM_014614	exon14	c.C1785T	p.T595T	ACATTGGGTGAGG	.	121.0	57.0	119.0	0.0	.	Atlas-SNP
FAM161A	84140	hgsc.bcm.edu	37	2	62067294	62067294	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FAM161A-136	NM_001201543	exon3	c.T845C	p.F282S	GCTCGGAATTTCT	.	51.0	29.0	55.0	0.0	.	Atlas-SNP
WDR92	116143	hgsc.bcm.edu	37	2	68368892	68368892	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	WDR92-68	NM_001256476	exon4	c.G451A	p.D151N	CAGGATCATCTTT	.	158.0	10.0	170.0	0.0	.	Atlas-SNP
AAK1	22848	hgsc.bcm.edu	37	2	69746290	69746290	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	AAK1-333	NM_014911	exon12	c.T1293C	p.T431T	GGCCTGAGTTTGC	.	102.0	43.0	80.0	0.0	.	Atlas-SNP
EXOC6B	23233	hgsc.bcm.edu	37	2	72742236	72742236	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	EXOC6B-68	NM_015189	exon9	c.A935T	p.E312V	TAATTCTCAAATG	.	88.0	46.0	74.0	0.0	.	Atlas-SNP
ALMS1	7840	hgsc.bcm.edu	37	2	73717935	73717935	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ALMS1-142	NM_015120	exon10	c.C8846A	p.P2949H	CCCTTCCTCAAGG	.	57.0	27.0	48.0	0.0	.	Atlas-SNP
TTC31	64427	hgsc.bcm.edu	37	2	74720124	74720124	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TTC31-90	NM_022492	exon13	c.G1339A	p.A447T	GAGCTGGCACCCT	.	187.0	81.0	136.0	0.0	.	Atlas-SNP
DNAH6	1768	hgsc.bcm.edu	37	2	84771614	84771614	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DNAH6-69	NM_001370	exon5	c.T920G	p.I307S	TGTTCATTGTTAA	.	33.0	18.0	16.0	0.0	.	Atlas-SNP
IMMT	10989	hgsc.bcm.edu	37	2	86371958	86371958	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	IMMT-91	NM_001100169	exon15	c.G1707A	p.W569X	TGAAAGCCAGAGT	.	63.0	30.0	44.0	0.0	.	Atlas-SNP
ANKRD39	51239	hgsc.bcm.edu	37	2	97519168	97519168	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ANKRD39-44	NM_016466	exon3	c.G378A	p.V126V	GTCATCCACCACC	.	167.0	73.0	136.0	0.0	.	Atlas-SNP
ZAP70	7535	hgsc.bcm.edu	37	2	98340777	98340777	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZAP70-955	NM_001079	exon3	c.G278A	p.G93E	CCGACGGGCTGCC	.	122.0	66.0	13.0	0.0	.	Atlas-SNP
TBC1D8	11138	hgsc.bcm.edu	37	2	101652587	101652587	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TBC1D8-25	NM_001102426	exon9	c.T1451C	p.V484A	TATTCCACAAAGT	.	68.0	6.0	136.0	0.0	.	Atlas-SNP
MAP4K4	9448	hgsc.bcm.edu	37	2	102483026	102483026	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MAP4K4-547	NM_001242559	exon18	c.C2107T	p.R703C	GGGGAACGCTTCA	.	72.0	53.0	106.0	0.0	.	Atlas-SNP
SLC9A2	6549	hgsc.bcm.edu	37	2	103300745	103300745	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLC9A2-157	NM_003048	exon5	c.T1375C	p.L459L	AAAAAATTGTTTA	.	131.0	116.0	174.0	0.0	.	Atlas-SNP
SLC5A7	60482	hgsc.bcm.edu	37	2	108609479	108609479	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLC5A7-93	NM_021815	exon4	c.T344A	p.L115X	CCATGTTAGACCC	.	84.0	63.0	155.0	0.0	.	Atlas-SNP
NPHP1	4867	hgsc.bcm.edu	37	2	110902136	110902136	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NPHP1-92	NM_001128178	exon15	c.C1363T	p.L455F	AGAAAAGCTCATA	.	108.0	77.0	196.0	0.0	.	Atlas-SNP
IL37	27178	hgsc.bcm.edu	37	2	113671396	113671396	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	IL37-92	NM_173204	exon2	c.G110A	p.G37D	AACCAGGCCCAAG	.	128.0	89.0	238.0	0.0	.	Atlas-SNP
DPP10	57628	hgsc.bcm.edu	37	2	116101426	116101426	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DPP10-142	NM_001178036	exon4	c.C59A	p.S20Y	GATTGTCTTTGGA	.	40.0	12.0	62.0	0.0	.	Atlas-SNP
INHBB	3625	hgsc.bcm.edu	37	2	121103925	121103925	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	INHBB-93	NM_002193	exon1	c.C161A	p.T54N	AGGACACCTGTAC	.	43.0	38.0	9.0	0.0	.	Atlas-SNP
INHBB	3625	hgsc.bcm.edu	37	2	121103941	121103941	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	INHBB-93	NM_002193	exon1	c.C177T	p.G59G	GTGCGGCGGCTTC	.	57.0	51.0	15.0	0.0	.	Atlas-SNP
INHBB	3625	hgsc.bcm.edu	37	2	121103965	121103965	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	INHBB-93	NM_002193	exon1	c.C201T	p.L67L	GGAGCTCGGCCGA	.	75.0	63.0	21.0	0.0	.	Atlas-SNP
INHBB	3625	hgsc.bcm.edu	37	2	121104035	121104035	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	INHBB-93	NM_002193	exon1	c.C271T	p.R91W	CGGGGCCGGCCCA	.	66.0	52.0	11.0	0.0	.	Atlas-SNP
AMER3	205147	hgsc.bcm.edu	37	2	131521542	131521542	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001105195	exon2	c.C1897A	p.P633T	AAGGCCCCAGTTC	.	159.0	75.0	159.0	0.0	.	Atlas-SNP
AMER3	205147	hgsc.bcm.edu	37	2	131521962	131521962	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001105195	exon2	c.C2317T	p.Q773X	GAGGACCAGCCCT	.	164.0	71.0	123.0	0.0	.	Atlas-SNP
LRP1B	53353	hgsc.bcm.edu	37	2	141259364	141259364	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LRP1B-311	NM_018557	exon55	c.T8742C	p.D2914D	ACAGTCATCCTTA	.	86.0	34.0	102.0	0.0	.	Atlas-SNP
GALNT5	11227	hgsc.bcm.edu	37	2	158115854	158115854	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GALNT5-290	NM_014568	exon1	c.G1260A	p.T420T	TGGAACGCACCAG	.	71.0	33.0	60.0	0.0	.	Atlas-SNP
TANC1	85461	hgsc.bcm.edu	37	2	159954275	159954275	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TANC1-92	NM_033394	exon4	c.C188T	p.S63F	CGATGTCTCTGCC	.	125.0	49.0	64.0	0.0	.	Atlas-SNP
WDSUB1	151525	hgsc.bcm.edu	37	2	160132121	160132121	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	WDSUB1-90	NM_152528	exon4	c.A612G	p.R204R	TGCCAGTCGAAAA	.	139.0	71.0	101.0	0.0	.	Atlas-SNP
PLA2R1	22925	hgsc.bcm.edu	37	2	160885416	160885416	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PLA2R1-93	NM_007366	exon5	c.C900T	p.H300H	GCCAGCGTGTTCA	.	389.0	193.0	275.0	1.0	.	Atlas-SNP
SLC4A10	57282	hgsc.bcm.edu	37	2	162719408	162719408	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLC4A10-229	NM_001178016	exon7	c.G635A	p.S212N	AAGTGAGCTCAGG	.	246.0	118.0	179.0	0.0	.	Atlas-SNP
SCN2A	6326	hgsc.bcm.edu	37	2	166226748	166226748	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SCN2A-142	NM_001040143	exon19	c.C3788T	p.A1263V	GGGTTGCATATGG	.	158.0	83.0	160.0	0.0	.	Atlas-SNP
GALNT3	2591	hgsc.bcm.edu	37	2	166611442	166611442	+	Nonsense_Mutation	SNP	G	G	C	rs144331248	byfrequency;alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GALNT3-92	NM_004482	exon8	c.C1524G	p.Y508X	ACTCACGTATCCA	.	105.0	38.0	99.0	0.0	G|1.000;A|0.000	Atlas-SNP
GALNT3	2591	hgsc.bcm.edu	37	2	166621434	166621434	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GALNT3-92	NM_004482	exon3	c.G648A	p.L216L	CTTCAGCAGTATT	.	318.0	141.0	290.0	1.0	.	Atlas-SNP
XIRP2	129446	hgsc.bcm.edu	37	2	168099879	168099879	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	XIRP2-104	NM_001199144	exon7	c.A1311C	p.E437D	GTTTGAAACAAGG	.	419.0	200.0	345.0	0.0	.	Atlas-SNP
DHRS9	10170	hgsc.bcm.edu	37	2	169948425	169948425	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DHRS9-90	NM_001142270	exon5	c.A698G	p.D233G	CTCCAGACATCAA	.	117.0	48.0	99.0	0.0	.	Atlas-SNP
HNRNPA3	220988	hgsc.bcm.edu	37	2	178083867	178083867	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HNRNPA3-70	NM_194247	exon9	c.G1064A	p.S355N	GAAGAAGCTCGGG	.	28.0	10.0	39.0	0.0	.	Atlas-SNP
AGPS	8540	hgsc.bcm.edu	37	2	178285080	178285080	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	AGPS-92	NM_003659	exon2	c.G344T	p.G115V	TGACTGGGAAAAG	.	82.0	33.0	77.0	0.0	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	37	2	179401241	179401241	+	Silent	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TTN-636	NM_001267550	exon357	c.G100233T	p.V33411V	CCAGGCCACAACA	.	56.0	25.0	51.0	0.0	.	Atlas-SNP
FAM171B	165215	hgsc.bcm.edu	37	2	187627230	187627230	+	Missense_Mutation	SNP	G	G	A	rs144563922		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FAM171B-141	NM_177454	exon8	c.G2161A	p.E721K	AAGCTCGAGAGGG	.	135.0	69.0	108.0	0.0	G|1.000;A|0.000	Atlas-SNP
TFPI	7035	hgsc.bcm.edu	37	2	188348876	188348876	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TFPI-91	NM_006287	exon6	c.A603C	p.Q201H	GGTTGATTGCGGA	.	90.0	44.0	72.0	0.0	.	Atlas-SNP
SLC40A1	30061	hgsc.bcm.edu	37	2	190436531	190436531	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLC40A1-91	NM_014585	exon5	c.A424T	p.I142F	TTGCAATATTTGC	.	213.0	71.0	161.0	0.0	.	Atlas-SNP
SLC40A1	30061	hgsc.bcm.edu	37	2	190436542	190436542	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLC40A1-91	NM_014585	exon5	c.C413G	p.T138S	GCAATAGTGATGA	.	190.0	61.0	153.0	0.0	.	Atlas-SNP
DNAH7	56171	hgsc.bcm.edu	37	2	196837087	196837087	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DNAH7-102	NM_018897	exon16	c.C1937A	p.S646Y	GCTGGAGAAAAGT	.	175.0	76.0	139.0	0.0	.	Atlas-SNP
HECW2	57520	hgsc.bcm.edu	37	2	197143276	197143276	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HECW2-668	NM_020760	exon15	c.G3111A	p.R1037R	GCGTTGCCTTGTC	.	209.0	83.0	148.0	0.0	.	Atlas-SNP
MARS2	92935	hgsc.bcm.edu	37	2	198571904	198571904	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MARS2-92	NM_138395	exon1	c.G1775A	p.R592Q	CCCACCGGACCTA	.	67.0	25.0	79.0	0.0	.	Atlas-SNP
MPP4	58538	hgsc.bcm.edu	37	2	202520986	202520986	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MPP4-22	NM_033066	exon17	c.C1235T	p.P412L	TCGTAAGGGGCAC	.	537.0	237.0	414.0	0.0	.	Atlas-SNP
NBEAL1	65065	hgsc.bcm.edu	37	2	204032081	204032081	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NBEAL1-92	NM_001114132	exon37	c.G5908A	p.E1970K	AAAAAAGAGGTAT	.	37.0	16.0	43.0	0.0	.	Atlas-SNP
FASTKD2	22868	hgsc.bcm.edu	37	2	207635989	207635989	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FASTKD2-118	NM_001136193	exon4	c.C965T	p.P322L	ATGCACCGATTGC	.	60.0	23.0	51.0	0.0	.	Atlas-SNP
PLEKHM3	389072	hgsc.bcm.edu	37	2	208725974	208725974	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PLEKHM3-23	NM_001080475	exon7	c.A1963G	p.K655E	CCAGCTTTCCCTC	.	120.0	50.0	97.0	0.0	.	Atlas-SNP
FN1	2335	hgsc.bcm.edu	37	2	216244003	216244003	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FN1-584	NM_212476	exon32	c.C4929T	p.V1643V	GGGTGTGACCTGA	.	197.0	96.0	147.0	0.0	.	Atlas-SNP
SLC11A1	6556	hgsc.bcm.edu	37	2	219251383	219251383	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLC11A1-93	NM_000578	exon5	c.C419A	p.T140N	GGCTGACCATCGA	.	94.0	50.0	76.0	0.0	.	Atlas-SNP
DOCK10	55619	hgsc.bcm.edu	37	2	225652093	225652093	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DOCK10-92	NM_014689	exon49	c.T5440C	p.Y1814H	ACATGTATAGCTG	.	115.0	40.0	93.0	0.0	.	Atlas-SNP
GIGYF2	26058	hgsc.bcm.edu	37	2	233651868	233651868	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GIGYF2-28	NM_001103148	exon8	c.A541C	p.N181H	AGACCAAATTTTG	.	64.0	31.0	86.0	0.0	.	Atlas-SNP
HDAC4	9759	hgsc.bcm.edu	37	2	240085574	240085574	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HDAC4-291	NM_006037	exon6	c.T536A	p.V179D	TTGAGGACAAATT	.	135.0	50.0	126.0	0.0	.	Atlas-SNP
ANKMY1	51281	hgsc.bcm.edu	37	2	241463346	241463346	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ANKMY1-90	NM_016552	exon7	c.C1521T	p.S507S	GTCGAAGCTGCTG	.	170.0	78.0	142.0	0.0	.	Atlas-SNP
RNPEPL1	57140	hgsc.bcm.edu	37	2	241516387	241516387	+	Missense_Mutation	SNP	C	C	T	rs193086300	by1000genomes	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RNPEPL1-154	NM_018226	exon10	c.C1864T	p.R622W	AGGGTGCGGCGCT	.	195.0	76.0	117.0	0.0	C|0.999;T|0.000	Atlas-SNP
KIF1A	547	hgsc.bcm.edu	37	2	241737134	241737134	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KIF1A-91	NM_001244008	exon2	c.C36T	p.V12V	GGGGCGGACCCGC	.	69.0	30.0	48.0	0.0	.	Atlas-SNP
THAP4	51078	hgsc.bcm.edu	37	2	242573029	242573029	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_015963	exon2	c.C543T	p.T181T	CACCATGGTGGCC	.	87.0	37.0	76.0	0.0	.	Atlas-SNP
CAD	790	hgsc.bcm.edu	37	2	27455435	27455435	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CAD-295	NM_004341	exon18	c.2764delT	p.W922fs	.	.	303.0	129.0	212.0	0.0	.	Atlas-Indel
PLB1	151056	hgsc.bcm.edu	37	2	28719029	28719029	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PLB1-141	NM_001170585	exon1	c.47delT	p.L16fs	.	.	108.0	50.0	77.0	0.0	.	Atlas-Indel
ABCG5	64240	hgsc.bcm.edu	37	2	44047175	44047175	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ABCG5-92	NM_022436	exon11	c.1529delA	p.H510fs	.	.	241.0	107.0	232.0	0.0	.	Atlas-Indel
LRPPRC	10128	hgsc.bcm.edu	37	2	44145165	44145165	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LRPPRC-93	NM_133259	exon29	c.3148delG	p.G1050fs	.	.	78.0	38.0	75.0	0.0	.	Atlas-Indel
PSME4	23198	hgsc.bcm.edu	37	2	54167140	54167140	+	Splice_Site	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PSME4-275	NM_014614	exon5	c.501-2C>-	.	.	.	30.0	11.0	24.0	0.0	.	Atlas-Indel
RBM43	375287	hgsc.bcm.edu	37	2	152107742	152107743	+	Frame_Shift_Ins	INS	-	-	TC	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RBM43-90	NM_198557	exon4	c.752_753insGA	p.K251fs	.	.	42.0	16.0	37.0	0.0	.	Atlas-Indel
SCN7A	6332	hgsc.bcm.edu	37	2	167330837	167330837	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SCN7A-67	NM_002976	exon3	c.253delA	p.K85fs	.	.	39.0	12.0	39.0	0.0	.	Atlas-Indel
SCRN3	79634	hgsc.bcm.edu	37	2	175264719	175264720	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SCRN3-91	NM_001193528	exon3	c.208_209insG	p.W70fs	.	.	80.0	33.0	70.0	0.0	.	Atlas-Indel
NBEAL1	65065	hgsc.bcm.edu	37	2	204032074	204032075	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NBEAL1-92	NM_001114132	exon37	c.5901_5902insA	p.F1967fs	.	.	41.0	15.0	44.0	0.0	.	Atlas-Indel
CRYGD	1421	hgsc.bcm.edu	37	2	208986447	208986447	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CRYGD-90	NM_006891	exon3	c.476delC	p.A159fs	.	.	104.0	39.0	90.0	0.0	.	Atlas-Indel
LRRFIP1	9208	hgsc.bcm.edu	37	2	238672429	238672431	+	In_Frame_Del	DEL	TGG	TGG	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	TGG	TGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LRRFIP1-153	NM_001137552	exon11	c.2072_2074del	p.691_692del	.	.	227.0	78.0	200.0	0.0	.	Atlas-Indel
LOXL3	84695	hgsc.bcm.edu	37	2	74763924	74763924	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LOXL3-226	NM_032603	exon5	c.825delC	p.G275fs	.	.	195.0	45.0	132.0	0.0	.	Pindel
MARCH7	64844	hgsc.bcm.edu	37	2	160604680	160604680	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MARCH7-68	NM_022826	exon5	c.878delC	p.T293fs	.	.	105.0	25.0	98.0	0.0	.	Pindel
NOSTRIN	115677	hgsc.bcm.edu	37	2	169699563	169699563	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NOSTRIN-90	NM_001039724	exon8	c.565delC	p.Q189fs	.	.	335.0	71.0	230.0	0.0	.	Pindel
DNAH7	56171	hgsc.bcm.edu	37	2	196788374	196788374	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DNAH7-102	NM_018897	exon23	c.3771delT	p.N1257fs	.	.	353.0	84.0	323.0	0.0	.	Pindel
SLC16A14	151473	hgsc.bcm.edu	37	2	230911202	230911203	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLC16A14-96	NM_152527	exon4	c.640_641del	p.214_214del	.	.	97.0	36.0	73.0	0.0	.	Pindel
MAP4K3	8491	hgsc.bcm.edu	37	2	39487811	39487812	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MAP4K3-550	NM_001270425	exon28	c.2181_2182insT	p.F727fs	.	.	103.0	34.0	86.0	0.0	.	Pindel
TTN	7273	hgsc.bcm.edu	37	2	179434526	179434527	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TTN-636	NM_133432	exon155	c.49513_49514insA	p.C16505fs	.	.	56.0	18.0	56.0	0.0	.	Pindel
PARD3B	117583	hgsc.bcm.edu	37	2	206166297	206166298	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PARD3B-140	NM_205863	exon18	c.2502_2503insA	p.V834fs	.	.	205.0	51.0	187.0	0.0	.	Pindel
CCDC108	255101	hgsc.bcm.edu	37	2	219895931	219895932	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CCDC108-94	NM_194302	exon8	c.912_913insA	p.K304fs	.	.	217.0	53.0	150.0	0.0	.	Pindel
COPS8	10920	hgsc.bcm.edu	37	2	238002796	238002797	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	COPS8-228	NM_006710	exon5	c.395_396insT	p.D132fs	.	.	117.0	33.0	100.0	0.0	.	Pindel
SETD5	55209	hgsc.bcm.edu	37	3	9488930	9488930	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SETD5-70	NM_001080517	exon14	c.T1721A	p.V574D	CAAATGTTACCAT	.	50.0	46.0	82.0	0.0	.	Atlas-SNP
RFTN1	23180	hgsc.bcm.edu	37	3	16475383	16475383	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RFTN1-93	NM_015150	exon3	c.G307A	p.A103T	GGATGGCTCTAAA	.	101.0	80.0	162.0	0.0	.	Atlas-SNP
RBMS3	27303	hgsc.bcm.edu	37	3	29941226	29941226	+	Missense_Mutation	SNP	C	C	T	rs202069394		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RBMS3-90	NM_001003793	exon10	c.C919T	p.P307S	CATCCGCCATACG	.	46.0	28.0	54.0	0.0	C|0.999;T|0.000	Atlas-SNP
GADL1	339896	hgsc.bcm.edu	37	3	30903251	30903251	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GADL1-90	NM_207359	exon2	c.T44A	p.I15N	TGATCAATATCTC	.	37.0	27.0	83.0	0.0	.	Atlas-SNP
FBXL2	25827	hgsc.bcm.edu	37	3	33419633	33419633	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FBXL2-289	NM_001171713	exon11	c.C684T	p.C228C	AGAATGCATCCTG	.	65.0	49.0	105.0	0.0	.	Atlas-SNP
PDCD6IP	10015	hgsc.bcm.edu	37	3	33883509	33883509	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PDCD6IP-228	NM_001162429	exon10	c.T1317G	p.D439E	TGTTGATCAGTTG	.	265.0	183.0	409.0	2.0	.	Atlas-SNP
SCN11A	11280	hgsc.bcm.edu	37	3	38921457	38921457	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SCN11A-99	NM_014139	exon19	c.A3377T	p.D1126V	ATGAAATCAAGGC	.	52.0	31.0	91.0	0.0	.	Atlas-SNP
ULK4	54986	hgsc.bcm.edu	37	3	41759264	41759264	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ULK4-297	NM_017886	exon23	c.A2411G	p.D804G	AGAAGATCCAGGC	.	68.0	53.0	101.0	0.0	.	Atlas-SNP
HHATL	57467	hgsc.bcm.edu	37	3	42738492	42738492	+	Splice_Site	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HHATL-93	NM_020707	exon9	c.1010+1G>A	.	CACTCACGTTTCC	.	106.0	86.0	155.0	0.0	.	Atlas-SNP
KIAA1143	57456	hgsc.bcm.edu	37	3	44803069	44803069	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KIAA1143-90	NM_020696	exon1	c.A26G	p.Y9C	CGCACGTACGATA	.	88.0	71.0	132.0	1.0	.	Atlas-SNP
KLHL18	23276	hgsc.bcm.edu	37	3	47378243	47378243	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KLHL18-90	NM_025010	exon7	c.A1117G	p.R373G	AGCAAGAGAAGGT	.	174.0	134.0	253.0	0.0	.	Atlas-SNP
SCAP	22937	hgsc.bcm.edu	37	3	47458817	47458817	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SCAP-91	NM_012235	exon17	c.G2947T	p.G983W	TCCGCCCCACCAC	.	53.0	43.0	61.0	0.0	.	Atlas-SNP
UBA7	7318	hgsc.bcm.edu	37	3	49846424	49846424	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	UBA7-228	NM_003335	exon18	c.G2332C	p.A778P	CAGAAGCCGAAGC	.	76.0	61.0	133.0	0.0	.	Atlas-SNP
RRP9	9136	hgsc.bcm.edu	37	3	51968549	51968549	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RRP9-154	NM_004704	exon13	c.T1199C	p.V400A	AGCCGCACACAGG	.	244.0	184.0	338.0	1.0	.	Atlas-SNP
DUSP7	1849	hgsc.bcm.edu	37	3	52085041	52085041	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DUSP7-659	NM_001947	exon3	c.G1050A	p.M350I	CAGGTTCATCTTC	.	94.0	73.0	90.0	0.0	.	Atlas-SNP
DUSP7	1849	hgsc.bcm.edu	37	3	52088244	52088244	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DUSP7-659	NM_001947	exon2	c.G664A	p.D222N	CTCGGTCCGACTC	.	144.0	108.0	156.0	0.0	.	Atlas-SNP
BAP1	8314	hgsc.bcm.edu	37	3	52438537	52438537	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	BAP1,NS,mesothelioma,0	BAP1-1032	NM_004656	exon12	c.C1182T	p.Y394Y	ATCTGAGTACTGC	.	103.0	83.0	133.0	1.0	.	Atlas-SNP
PHF7	51533	hgsc.bcm.edu	37	3	52457218	52457218	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PHF7-153	NM_016483	exon11	c.C1031G	p.T344S	CTTGGACTGATTG	.	188.0	152.0	253.0	1.0	.	Atlas-SNP
STAB1	23166	hgsc.bcm.edu	37	3	52543970	52543970	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	STAB1-139	NM_015136	exon23	c.G2432A	p.S811N	GCTTCAGTGGCCG	.	134.0	108.0	159.0	0.0	.	Atlas-SNP
DENND6A	201627	hgsc.bcm.edu	37	3	57616494	57616494	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_152678	exon17	c.A1465T	p.T489S	GTCCTGTTTTCTC	.	30.0	23.0	52.0	0.0	.	Atlas-SNP
ABHD6	57406	hgsc.bcm.edu	37	3	58255106	58255106	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ABHD6-92	NM_020676	exon4	c.C335T	p.T112I	GCACCACCCGCTC	.	173.0	135.0	207.0	1.0	.	Atlas-SNP
ROBO2	6092	hgsc.bcm.edu	37	3	77147394	77147394	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ROBO2-328	NM_002942	exon2	c.C291T	p.H97H	CGTGCACGGGCGC	.	246.0	206.0	333.0	0.0	.	Atlas-SNP
GBE1	2632	hgsc.bcm.edu	37	3	81635291	81635291	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GBE1-25	NM_000158	exon10	c.T1287C	p.G429G	AAAACCACCCCCT	.	34.0	27.0	50.0	0.0	.	Atlas-SNP
LSAMP	4045	hgsc.bcm.edu	37	3	115529261	115529261	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LSAMP-90	NM_002338	exon7	c.G920A	p.R307K	CCAGGTCCTGCAG	.	130.0	107.0	186.0	0.0	.	Atlas-SNP
OSBPL11	114885	hgsc.bcm.edu	37	3	125298757	125298757	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	OSBPL11-135	NM_022776	exon3	c.C361T	p.H121Y	AGGTGTGAGAATC	.	41.0	32.0	72.0	0.0	.	Atlas-SNP
ISY1	57461	hgsc.bcm.edu	37	3	128853775	128853775	+	Silent	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ISY1-90	NM_001199469	exon9	c.A507T	p.T169T	AGCACGTGTCTTT	.	38.0	27.0	88.0	0.0	.	Atlas-SNP
DNAJC13	23317	hgsc.bcm.edu	37	3	132179933	132179933	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DNAJC13-272	NM_015268	exon15	c.G1597A	p.D533N	CTCTTGGACTTCC	.	100.0	81.0	160.0	0.0	.	Atlas-SNP
TSC22D2	9819	hgsc.bcm.edu	37	3	150127417	150127417	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TSC22D2-91	NM_014779	exon1	c.C280A	p.L94M	GGGCAGCTGGCAG	.	67.0	54.0	93.0	0.0	.	Atlas-SNP
CCNL1	57018	hgsc.bcm.edu	37	3	156877880	156877880	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CCNL1-659	NM_020307	exon1	c.G4A	p.A2T	CGGACGCCATAGT	.	38.0	30.0	8.0	0.0	.	Atlas-SNP
SLITRK3	22865	hgsc.bcm.edu	37	3	164905717	164905717	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	SLITRK3,NS,carcinoma,0	SLITRK3-100	NM_014926	exon2	c.G2902A	p.E968K	GGACTTCGAGGTA	.	73.0	55.0	130.0	1.0	.	Atlas-SNP
PDCD10	11235	hgsc.bcm.edu	37	3	167414893	167414893	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PDCD10-659	NM_145859	exon5	c.C172G	p.L58V	GTGTGAGACCTGG	.	15.0	10.0	39.0	0.0	.	Atlas-SNP
LRRC34	151827	hgsc.bcm.edu	37	3	169514632	169514632	+	Missense_Mutation	SNP	G	G	A	rs201395437		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LRRC34-90	NM_001172779	exon8	c.C809T	p.A270V	TGTAGTGCAACAA	.	70.0	52.0	167.0	0.0	G|0.999;A|0.001	Atlas-SNP
GHSR	2693	hgsc.bcm.edu	37	3	172165571	172165571	+	Silent	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GHSR-501	NM_198407	exon1	c.G633T	p.T211T	CATGACCGTGAGC	.	121.0	95.0	210.0	1.0	.	Atlas-SNP
NAALADL2	254827	hgsc.bcm.edu	37	3	175165096	175165096	+	Silent	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NAALADL2-47	NM_207015	exon6	c.G1170T	p.L390L	AAAACTGATCTCT	.	48.0	39.0	60.0	0.0	.	Atlas-SNP
ATP11B	23200	hgsc.bcm.edu	37	3	182538053	182538053	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ATP11B-93	NM_014616	exon2	c.T33C	p.F11F	GGGTTTTGACCCA	.	62.0	52.0	80.0	0.0	.	Atlas-SNP
VWA5B2	90113	hgsc.bcm.edu	37	3	183953046	183953046	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_138345	exon7	c.G1051A	p.A351T	GGGACAGCTACTC	.	118.0	80.0	194.0	0.0	.	Atlas-SNP
VWA5B2	90113	hgsc.bcm.edu	37	3	183957477	183957477	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_138345	exon15	c.G2393A	p.G798E	CCCCAGGAAACCT	.	60.0	50.0	75.0	0.0	.	Atlas-SNP
VWA5B2	90113	hgsc.bcm.edu	37	3	183959354	183959354	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_138345	exon19	c.G3257T	p.R1086L	AGGAGCGCCTCTG	.	65.0	53.0	6.0	0.0	.	Atlas-SNP
EIF4G1	1981	hgsc.bcm.edu	37	3	184049834	184049834	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	EIF4G1-344	NM_182917	exon31	c.C4581T	p.Y1527Y	GCTCTACGCCCTC	.	114.0	6.0	185.0	0.0	.	Atlas-SNP
POLR2H	5437	hgsc.bcm.edu	37	3	184083008	184083008	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	POLR2H-90	NM_006232	exon3	c.C245T	p.P82L	ATAGGCCTTCCAG	.	101.0	76.0	206.0	0.0	.	Atlas-SNP
FGF12	2257	hgsc.bcm.edu	37	3	192053209	192053209	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FGF12-949	NM_004113	exon4	c.C169T	p.Q57X	CTCCTTGGATGGC	.	167.0	136.0	200.0	0.0	.	Atlas-SNP
ANKRD28	23243	hgsc.bcm.edu	37	3	15756165	15756166	+	Splice_Site	INS	-	-	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ANKRD28-135	NM_001195098	exon10	c.445-2->C	.	.	.	17.0	13.0	56.0	0.0	.	Atlas-Indel
DUSP7	1849	hgsc.bcm.edu	37	3	52088242	52088243	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DUSP7-659	NM_001947	exon2	c.666_667insA	p.D222fs	.	.	143.0	106.0	153.0	0.0	.	Atlas-Indel
KALRN	8997	hgsc.bcm.edu	37	3	124431854	124431855	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KALRN-738	NM_001024660	exon58	c.8148_8149insA	p.S2716fs	.	.	59.0	43.0	86.0	0.0	.	Atlas-Indel
CCRL1	51554	hgsc.bcm.edu	37	3	132321037	132321037	+	RNA	DEL	A	A	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CCRL1-658	.	.	.	.	.	.	18.0	10.0	38.0	0.0	.	Atlas-Indel
MUC4	4585	hgsc.bcm.edu	37	3	195511828	195511828	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MUC4-90	NM_018406	exon2	c.6624delT	p.P2208fs	.	.	415.0	76.0	519.0	0.0	.	Atlas-Indel
DOCK3	1795	hgsc.bcm.edu	37	3	51417604	51417604	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DOCK3-22	NM_004947	exon52	c.5548delA	p.T1850fs	.	.	55.0	30.0	51.0	0.0	.	Pindel
BAP1	8314	hgsc.bcm.edu	37	3	52437564	52437565	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	BAP1-1032	NM_004656	exon13	c.1597_1598insT	p.G533fs	.	.	123.0	57.0	189.0	0.0	.	Pindel
PIGG	54872	hgsc.bcm.edu	37	4	527709	527709	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PIGG-92	NM_017733	exon12	c.T2650C	p.Y884H	GGGACGTACGCAG	.	301.0	112.0	206.0	0.0	.	Atlas-SNP
SPON2	10417	hgsc.bcm.edu	37	4	1164348	1164348	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SPON2-90	NM_001199021	exon7	c.C653T	p.P218L	TGGCTGGGAGAGG	.	119.0	47.0	88.0	0.0	.	Atlas-SNP
NELFA	7469	hgsc.bcm.edu	37	4	1989663	1989663	+	Missense_Mutation	SNP	G	G	A	rs145121989		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_005663	exon4	c.C649T	p.R217W	TCTTCCGCAGCAG	.	41.0	24.0	43.0	0.0	G|1.000;A|0.000	Atlas-SNP
HTT	3064	hgsc.bcm.edu	37	4	3137678	3137678	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HTT-281	NM_002111	exon20	c.C2681T	p.A894V	GAGGGGCTCATCA	.	152.0	45.0	142.0	0.0	.	Atlas-SNP
HTT	3064	hgsc.bcm.edu	37	4	3240681	3240681	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HTT-281	NM_002111	exon66	c.C9191T	p.S3064F	GCGCGTCCACCAG	.	129.0	60.0	82.0	0.0	.	Atlas-SNP
OTOP1	133060	hgsc.bcm.edu	37	4	4228456	4228456	+	Silent	SNP	G	G	T	rs73191872	bycluster;by1000genomes	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	OTOP1-92	NM_177998	exon1	c.C136A	p.R46R	CGCCCCGCCGGGG	.	100.0	29.0	6.0	0.0	.	Atlas-SNP
GPR78	27201	hgsc.bcm.edu	37	4	8583357	8583357	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GPR78-516	NM_080819	exon1	c.G648A	p.L216L	CGCGCTGCTCGCC	.	41.0	12.0	10.0	0.0	.	Atlas-SNP
KCNIP4	80333	hgsc.bcm.edu	37	4	20731736	20731736	+	Missense_Mutation	SNP	C	C	T	rs149977507		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KCNIP4-91	NM_001035004	exon8	c.G536A	p.R179H	ATGGAGCGCATTA	.	93.0	37.0	93.0	0.0	C|1.000;T|0.000	Atlas-SNP
ARAP2	116984	hgsc.bcm.edu	37	4	36214032	36214032	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ARAP2-93	NM_015230	exon5	c.T1119C	p.F373F	GATGATAAAAGAG	.	48.0	18.0	63.0	0.0	.	Atlas-SNP
TBC1D1	23216	hgsc.bcm.edu	37	4	38119794	38119794	+	Silent	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TBC1D1-91	NM_015173	exon17	c.A2943T	p.G981G	GCTGGGATTCGTA	.	105.0	41.0	68.0	0.0	.	Atlas-SNP
PDS5A	23244	hgsc.bcm.edu	37	4	39868540	39868540	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001100399	exon23	c.T2583C	p.L861L	TAACCGAAGGGTT	.	89.0	32.0	103.0	0.0	.	Atlas-SNP
PDGFRA	5156	hgsc.bcm.edu	37	4	55153648	55153648	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PDGFRA-9497	NM_006206	exon19	c.T2614G	p.Y872D	AACCTCTACACCA	.	185.0	85.0	143.0	0.0	.	Atlas-SNP
SRP72	6731	hgsc.bcm.edu	37	4	57357651	57357651	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SRP72-116	NM_001267722	exon14	c.G1374T	p.E458D	TGTTGAGGCTCTT	.	159.0	60.0	126.0	0.0	.	Atlas-SNP
IGFBP7	3490	hgsc.bcm.edu	37	4	57907052	57907052	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	IGFBP7-522	NM_001553	exon2	c.G523A	p.A175T	CCTGGGCACCAGT	.	147.0	63.0	141.0	0.0	.	Atlas-SNP
CENPC1	1060	hgsc.bcm.edu	37	4	68380317	68380317	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CENPC1-205	NM_001812	exon8	c.G919T	p.E307X	CCGACTCATCAAT	.	70.0	25.0	71.0	0.0	.	Atlas-SNP
UBA6	55236	hgsc.bcm.edu	37	4	68530972	68530972	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	UBA6-90	NM_018227	exon10	c.G832A	p.E278K	CCAGTTCTGTGGT	.	173.0	66.0	163.0	0.0	.	Atlas-SNP
TMPRSS11E	28983	hgsc.bcm.edu	37	4	69343139	69343139	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TMPRSS11E-70	NM_014058	exon8	c.T760C	p.S254P	AAACCTTCGAAAA	.	204.0	96.0	186.0	0.0	.	Atlas-SNP
ADAMTS3	9508	hgsc.bcm.edu	37	4	73148985	73148985	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ADAMTS3-651	NM_014243	exon22	c.A3486G	p.S1162S	CATTTGTGAAGCT	.	136.0	51.0	108.0	0.0	.	Atlas-SNP
AFP	174	hgsc.bcm.edu	37	4	74303978	74303978	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	AFP-91	NM_001134	exon3	c.G225A	p.E75E	AATTGAGAAACCC	.	74.0	25.0	63.0	0.0	.	Atlas-SNP
FAM47E-STBD1	0	hgsc.bcm.edu	37	4	77177441	77177441	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001242939	exon2	c.G185A	p.C62Y	CGCCTTGCACTGG	.	90.0	33.0	87.0	0.0	.	Atlas-SNP
FRAS1	80144	hgsc.bcm.edu	37	4	79258865	79258865	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FRAS1-68	NM_025074	exon20	c.G2316C	p.L772F	GCCGTTGGAGTCT	.	334.0	136.0	230.0	0.0	.	Atlas-SNP
BMP2K	55589	hgsc.bcm.edu	37	4	79832494	79832494	+	Silent	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	BMP2K-383	NM_198892	exon16	c.A2793T	p.V931V	AGATGTATTTGGC	.	565.0	211.0	536.0	1.0	.	Atlas-SNP
PTPN13	5783	hgsc.bcm.edu	37	4	87643506	87643506	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PTPN13-230	NM_080684	exon10	c.C1527T	p.I509I	CACAATCAAAGCG	.	494.0	214.0	368.0	0.0	.	Atlas-SNP
PTPN13	5783	hgsc.bcm.edu	37	4	87643549	87643549	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PTPN13-230	NM_080684	exon10	c.A1570G	p.I524V	AGAGAAATTGCCC	.	446.0	172.0	339.0	0.0	.	Atlas-SNP
FAM13A	10144	hgsc.bcm.edu	37	4	89679992	89679992	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FAM13A-70	NM_001265580	exon6	c.C577T	p.Q193X	CATCTTGATTTCT	.	146.0	58.0	93.0	0.0	.	Atlas-SNP
GRID2	2895	hgsc.bcm.edu	37	4	94547465	94547465	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GRID2-159	NM_001510	exon14	c.G2239A	p.E747K	GTATTGGAATATG	.	119.0	50.0	93.0	0.0	.	Atlas-SNP
ADH7	131	hgsc.bcm.edu	37	4	100349715	100349715	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ADH7-227	NM_000673	exon3	c.A229T	p.I77F	CCACAATCACTGG	.	132.0	51.0	96.0	0.0	.	Atlas-SNP
CENPE	1062	hgsc.bcm.edu	37	4	104066472	104066472	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CENPE-277	NM_001813	exon32	c.A4592G	p.K1531R	TCCTCTTTCTCAT	.	12.0	5.0	9.0	0.0	.	Atlas-SNP
TET2	54790	hgsc.bcm.edu	37	4	106196337	106196337	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TET2-4618	NM_001127208	exon11	c.T4670A	p.V1557D	AGTCTGTCAACTC	.	178.0	78.0	124.0	0.0	.	Atlas-SNP
SEC24B	10427	hgsc.bcm.edu	37	4	110460806	110460806	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SEC24B-137	NM_006323	exon24	c.A3782G	p.H1261R	TGCTTCATGTTCA	.	42.0	20.0	40.0	0.0	.	Atlas-SNP
PITX2	5308	hgsc.bcm.edu	37	4	111539802	111539802	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PITX2-650	NM_001204397	exon7	c.C433T	p.R145C	GGTTGCGCTCCCT	.	138.0	64.0	115.0	0.0	.	Atlas-SNP
C4orf21	55345	hgsc.bcm.edu	37	4	113484389	113484389	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	C4orf21-90	NM_018392	exon17	c.G4480C	p.D1494H	AAGTATCCAGCTC	.	153.0	67.0	122.0	0.0	.	Atlas-SNP
PRDM5	11107	hgsc.bcm.edu	37	4	121616316	121616316	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PRDM5-91	NM_018699	exon16	c.G1843A	p.D615N	GGTAGTCATTCCT	.	57.0	39.0	94.0	0.0	.	Atlas-SNP
FAT4	79633	hgsc.bcm.edu	37	4	126373258	126373258	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FAT4-108	NM_024582	exon9	c.A11087G	p.N3696S	CGAGCAACATCCG	.	99.0	81.0	160.0	0.0	.	Atlas-SNP
MAML3	55534	hgsc.bcm.edu	37	4	140811799	140811799	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MAML3-455	NM_018717	exon2	c.A791T	p.D264V	AAGCTATCCTCCA	.	70.0	43.0	136.0	0.0	.	Atlas-SNP
NR3C2	4306	hgsc.bcm.edu	37	4	149041326	149041326	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NR3C2-154	NM_001166104	exon6	c.T2273C	p.L758S	AGCAGCAAAACTT	.	56.0	41.0	115.0	0.0	.	Atlas-SNP
FAM198B	51313	hgsc.bcm.edu	37	4	159092094	159092094	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FAM198B-90	NM_001128424	exon2	c.T434C	p.L145S	CCGACCAAAGCCT	.	68.0	55.0	117.0	0.0	.	Atlas-SNP
NAF1	92345	hgsc.bcm.edu	37	4	164050138	164050138	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NAF1-70	NM_138386	exon8	c.T1396C	p.Y466H	GGGAGTATGGTAA	.	10.0	8.0	22.0	0.0	.	Atlas-SNP
NPY5R	4889	hgsc.bcm.edu	37	4	164271440	164271440	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NPY5R-523	NM_006174	exon4	c.C15T	p.L5L	AGAGCTCGACGAG	.	18.0	13.0	48.0	0.0	.	Atlas-SNP
AGA	175	hgsc.bcm.edu	37	4	178358622	178358622	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	AGA-90	NM_001171988	exon5	c.A559G	p.I187V	TTAAGATACCAGG	.	108.0	88.0	183.0	0.0	.	Atlas-SNP
FAT1	2195	hgsc.bcm.edu	37	4	187532668	187532668	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FAT1-34	NM_005245	exon14	c.A9725G	p.D3242G	AGAATGTCCTCAG	.	215.0	170.0	348.0	1.0	.	Atlas-SNP
GRK4	2868	hgsc.bcm.edu	37	4	3015470	3015470	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GRK4-507	NM_001004057	exon8	c.655delC	p.Q219fs	.	.	60.0	23.0	38.0	0.0	.	Atlas-Indel
RGS12	6002	hgsc.bcm.edu	37	4	3432431	3432431	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RGS12-226	NM_198229	exon17	c.3862delA	p.T1288fs	.	.	48.0	23.0	30.0	0.0	.	Atlas-Indel
LIAS	11019	hgsc.bcm.edu	37	4	39466916	39466916	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LIAS-90	NM_194451	exon6	c.561delT	p.D187fs	.	.	128.0	55.0	110.0	0.0	.	Atlas-Indel
CLOCK	9575	hgsc.bcm.edu	37	4	56336953	56336954	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CLOCK-515	NM_001267843	exon9	c.369_370insT	p.L123fs	.	.	133.0	44.0	124.0	0.0	.	Atlas-Indel
SEC31A	22872	hgsc.bcm.edu	37	4	83785565	83785565	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SEC31A-268	NM_001077207	exon11	c.1385delT	p.I462fs	.	.	74.0	25.0	76.0	0.0	.	Atlas-Indel
TLR2	7097	hgsc.bcm.edu	37	4	154624389	154624392	+	Frame_Shift_Del	DEL	TTAC	TTAC	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	TTAC	TTAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TLR2-523	NM_003264	exon3	c.329_332del	p.110_111del	.	.	48.0	33.0	72.0	0.0	.	Atlas-Indel
LAP3	51056	hgsc.bcm.edu	37	4	17585226	17585226	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LAP3-90	NM_015907	exon5	c.499delC	p.Q167fs	.	.	217.0	51.0	154.0	0.0	.	Pindel
CWH43	80157	hgsc.bcm.edu	37	4	49009291	49009291	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CWH43-93	NM_025087	exon8	c.1133delC	p.T378fs	.	.	88.0	18.0	98.0	0.0	.	Pindel
DCLK2	166614	hgsc.bcm.edu	37	4	151000382	151000384	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	AGA	AGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DCLK2-300	NM_001040260	exon1	c.202_204del	p.68_68del	.	.	278.0	103.0	336.0	0.0	.	Pindel
SDHA	6389	hgsc.bcm.edu	37	5	236583	236583	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SDHA-226	NM_004168	exon10	c.G1301A	p.G434D	TGCCCGGCCTGTA	.	467.0	194.0	325.0	0.0	.	Atlas-SNP
DNAH5	1767	hgsc.bcm.edu	37	5	13701414	13701414	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DNAH5-182	NM_001369	exon77	c.A13470G	p.G4490G	TAAAAATCCCTGG	.	45.0	20.0	56.0	0.0	.	Atlas-SNP
DNAH5	1767	hgsc.bcm.edu	37	5	13809182	13809182	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DNAH5-182	NM_001369	exon46	c.C7723T	p.L2575L	GAATTAGAAAGTC	.	204.0	92.0	170.0	0.0	.	Atlas-SNP
MYO10	4651	hgsc.bcm.edu	37	5	16711035	16711035	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MYO10-3	NM_012334	exon21	c.G2151A	p.W717X	CAGCTGCCACTCG	.	136.0	51.0	89.0	0.0	.	Atlas-SNP
ZFR	51663	hgsc.bcm.edu	37	5	32355934	32355934	+	Missense_Mutation	SNP	C	C	T	rs55686708	bycluster	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZFR-90	NM_016107	exon20	c.G3157A	p.D1053N	CACTATCTCTTCT	.	102.0	34.0	81.0	0.0	.	Atlas-SNP
NIPBL	25836	hgsc.bcm.edu	37	5	36953863	36953863	+	Splice_Site	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NIPBL-293	NM_133433	exon2	c.64+1G>A	.	CAGACCGTAAGTT	.	66.0	27.0	69.0	0.0	.	Atlas-SNP
OXCT1	5019	hgsc.bcm.edu	37	5	41739509	41739509	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	OXCT1-133	NM_000436	exon16	c.A1504G	p.T502A	ACCCAGTACTCTT	.	121.0	48.0	105.0	0.0	.	Atlas-SNP
PAIP1	10605	hgsc.bcm.edu	37	5	43539100	43539100	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PAIP1-69	NM_183323	exon5	c.A436G	p.K146E	CCCCTTTTGCAGC	.	56.0	27.0	44.0	0.0	.	Atlas-SNP
SETD9	133383	hgsc.bcm.edu	37	5	56207218	56207218	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001171990	exon2	c.A321G	p.Q107Q	ACAGCAAAGTACC	.	74.0	31.0	66.0	0.0	.	Atlas-SNP
MIER3	166968	hgsc.bcm.edu	37	5	56234785	56234785	+	Silent	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MIER3-90	NM_152622	exon4	c.A240T	p.P80P	AACTGCTGGAATT	.	114.0	38.0	83.0	0.0	.	Atlas-SNP
NLN	57486	hgsc.bcm.edu	37	5	65058794	65058794	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NLN-90	NM_020726	exon3	c.G309A	p.R103R	GGAAAGGACCATG	.	115.0	50.0	94.0	0.0	.	Atlas-SNP
SLC30A5	64924	hgsc.bcm.edu	37	5	68412226	68412226	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLC30A5-226	NM_022902	exon10	c.A1078G	p.N360D	GCTGCCAATATCT	.	66.0	28.0	47.0	0.0	.	Atlas-SNP
POLK	51426	hgsc.bcm.edu	37	5	74869656	74869656	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	POLK-229	NM_016218	exon5	c.C502T	p.P168S	ATAGTGCCCCCCA	.	160.0	78.0	158.0	0.0	.	Atlas-SNP
CETN3	1070	hgsc.bcm.edu	37	5	89703515	89703515	+	Splice_Site	SNP	C	C	T	rs143515805	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CETN3-90	NM_004365	exon3	c.153+1G>A	.	CCATTACCTTTAA	.	91.0	36.0	89.0	0.0	C|1.000;G|0.000	Atlas-SNP
GPR98	84059	hgsc.bcm.edu	37	5	89990218	89990218	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GPR98-103	NM_032119	exon33	c.A7645G	p.N2549D	CTCATGAACATTT	.	146.0	68.0	151.0	0.0	.	Atlas-SNP
NR2F1	7025	hgsc.bcm.edu	37	5	92923842	92923842	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NR2F1-227	NM_005654	exon2	c.T683C	p.F228S	TGCTCTTCAGCGC	.	294.0	122.0	153.0	0.0	.	Atlas-SNP
KIAA0825	285600	hgsc.bcm.edu	37	5	93807267	93807267	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KIAA0825-91	NM_001145678	exon9	c.C1625T	p.A542V	AGGGGTGCTTTGG	.	113.0	50.0	93.0	0.0	.	Atlas-SNP
ERAP1	51752	hgsc.bcm.edu	37	5	96117463	96117463	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ERAP1-70	NM_001040458	exon16	c.C2381G	p.S794C	GTACTGGACAAAG	.	60.0	21.0	42.0	0.0	.	Atlas-SNP
LNPEP	4012	hgsc.bcm.edu	37	5	96315242	96315242	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LNPEP-229	NM_005575	exon2	c.C420T	p.G140G	AGAAGGCTGCCAT	.	158.0	64.0	120.0	0.0	.	Atlas-SNP
LNPEP	4012	hgsc.bcm.edu	37	5	96315342	96315342	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LNPEP-229	NM_005575	exon2	c.C520T	p.P174S	GTTGTGCCACTAC	.	101.0	47.0	95.0	0.0	.	Atlas-SNP
APC	324	hgsc.bcm.edu	37	5	112178919	112178919	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	APC-12026	NM_001127511	exon14	c.G7574A	p.R2525K	TCAATAGGTCAGG	.	146.0	59.0	111.0	0.0	.	Atlas-SNP
SEMA6A	57556	hgsc.bcm.edu	37	5	115815886	115815886	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SEMA6A-92	NM_020796	exon12	c.G1182A	p.T394T	CGGGTGCGTCTTG	.	201.0	86.0	152.0	0.0	.	Atlas-SNP
ZNF608	57507	hgsc.bcm.edu	37	5	123976977	123976977	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF608-229	NM_020747	exon7	c.C4418T	p.P1473L	ATTAGCGGGTAAC	.	136.0	64.0	135.0	0.0	.	Atlas-SNP
RAPGEF6	51735	hgsc.bcm.edu	37	5	130766961	130766961	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RAPGEF6-661	NM_001164387	exon28	c.T4095A	p.H1365Q	AATGATATGCTCT	.	67.0	33.0	70.0	0.0	.	Atlas-SNP
PCBD2	84105	hgsc.bcm.edu	37	5	134296370	134296370	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PCBD2-90	NM_032151	exon4	c.G392A	p.X131X	CTGTGTGATTTCT	.	122.0	54.0	101.0	0.0	.	Atlas-SNP
TGFBI	7045	hgsc.bcm.edu	37	5	135396593	135396593	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TGFBI-26	NM_000358	exon14	c.T1874C	p.V625A	GCGTGGTCCATGT	.	452.0	177.0	402.0	1.0	.	Atlas-SNP
KDM3B	51780	hgsc.bcm.edu	37	5	137722268	137722268	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KDM3B-542	NM_016604	exon7	c.G1338A	p.V446V	GACTGTGCCAGAA	.	307.0	137.0	258.0	0.0	.	Atlas-SNP
PROB1	389333	hgsc.bcm.edu	37	5	138728085	138728085	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001161546	exon1	c.G2686A	p.A896T	GCGGCGCCTCCAC	.	55.0	21.0	11.0	0.0	.	Atlas-SNP
PCDHB2	56133	hgsc.bcm.edu	37	5	140475545	140475545	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PCDHB2-96	NM_018936	exon1	c.C1171T	p.L391F	GATGATCTTCCTT	.	292.0	138.0	227.0	0.0	.	Atlas-SNP
PCDHB5	26167	hgsc.bcm.edu	37	5	140516906	140516906	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PCDHB5-95	NM_015669	exon1	c.C1890T	p.S630S	GCTGAGCGAGCGC	.	105.0	45.0	7.0	0.0	.	Atlas-SNP
NR3C1	2908	hgsc.bcm.edu	37	5	142662181	142662181	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NR3C1-92	NM_001018074	exon8	c.C2133T	p.N711N	CTGCCAGTTCTGG	.	52.0	17.0	56.0	0.0	.	Atlas-SNP
GRXCR2	643226	hgsc.bcm.edu	37	5	145246099	145246099	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GRXCR2-22	NM_001080516	exon2	c.G529A	p.A177T	TTTCTGCCTCCAC	.	105.0	20.0	58.0	0.0	.	Atlas-SNP
RBM27	54439	hgsc.bcm.edu	37	5	145634509	145634509	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RBM27-70	NM_018989	exon10	c.C1448A	p.T483K	CAGATACATATGA	.	69.0	21.0	68.0	0.0	.	Atlas-SNP
RBM27	54439	hgsc.bcm.edu	37	5	145647328	145647328	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RBM27-70	NM_018989	exon15	c.A2448C	p.K816N	AAAAAAACAGGTA	.	272.0	115.0	241.0	1.0	.	Atlas-SNP
TCERG1	10915	hgsc.bcm.edu	37	5	145834680	145834680	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TCERG1-92	NM_001040006	exon2	c.C121T	p.R41X	GTGATGCGAGGCC	.	140.0	66.0	115.0	0.0	.	Atlas-SNP
TCERG1	10915	hgsc.bcm.edu	37	5	145838674	145838674	+	Silent	SNP	A	A	G	rs111879925	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TCERG1-92	NM_001040006	exon4	c.A666G	p.Q222Q	GGCCCAAGCCCAA	.	157.0	15.0	48.0	0.0	A|0.500;G|0.500	Atlas-SNP
TCERG1	10915	hgsc.bcm.edu	37	5	145849290	145849290	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TCERG1-92	NM_001040006	exon6	c.A1319G	p.Q440R	AACCCCAAGAACT	.	37.0	11.0	47.0	0.0	.	Atlas-SNP
FBXO38	81545	hgsc.bcm.edu	37	5	147805102	147805102	+	Missense_Mutation	SNP	C	C	T	rs144744644		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FBXO38-231	NM_030793	exon14	c.C1756T	p.R586C	CTTCAGCGTGTAG	.	160.0	75.0	135.0	0.0	C|1.000;T|0.000	Atlas-SNP
PDGFRB	5159	hgsc.bcm.edu	37	5	149510124	149510124	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PDGFRB-1499	NM_002609	exon9	c.T1345C	p.S449P	AGGCAGACCAGAT	.	64.0	27.0	49.0	0.0	.	Atlas-SNP
CNOT8	9337	hgsc.bcm.edu	37	5	154254927	154254927	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CNOT8-90	NM_004779	exon7	c.G807A	p.K269K	CCAGAAGCAGAAT	.	100.0	40.0	80.0	0.0	.	Atlas-SNP
EBF1	1879	hgsc.bcm.edu	37	5	158140042	158140042	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	EBF1-92	NM_024007	exon13	c.C1305T	p.G435G	ATTCACGCCCATC	.	209.0	80.0	195.0	0.0	.	Atlas-SNP
TENM2	57451	hgsc.bcm.edu	37	5	166711961	166711961	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001122679	exon1	c.A119G	p.Y40C	AATCCTACAGCTC	.	265.0	106.0	212.0	0.0	.	Atlas-SNP
TENM2	57451	hgsc.bcm.edu	37	5	167617506	167617506	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001122679	exon14	c.A2707T	p.K903X	GCAGGCAAGGATA	.	262.0	108.0	220.0	0.0	.	Atlas-SNP
UBTD2	92181	hgsc.bcm.edu	37	5	171661284	171661284	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	UBTD2-90	NM_152277	exon2	c.T149C	p.L50P	CTGCGTAGTTGTC	.	131.0	59.0	114.0	0.0	.	Atlas-SNP
MSX2	4488	hgsc.bcm.edu	37	5	174152037	174152037	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MSX2-90	NM_002449	exon1	c.G375A	p.P125P	GCCGCCGCCAAGT	.	297.0	144.0	186.0	0.0	.	Atlas-SNP
CLTB	1212	hgsc.bcm.edu	37	5	175824632	175824632	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CLTB-90	NM_007097	exon4	c.T440C	p.V147A	TTCTCTACTTGTT	.	83.0	37.0	61.0	0.0	.	Atlas-SNP
AGXT2L2	85007	hgsc.bcm.edu	37	5	177649506	177649506	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	AGXT2L2-91	NM_153373	exon8	c.C777A	p.F259L	GGCCCAGAAGTGC	.	434.0	189.0	368.0	1.0	.	Atlas-SNP
ZNF454	285676	hgsc.bcm.edu	37	5	178392351	178392351	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF454-93	NM_182594	exon5	c.A946G	p.T316A	CACCTTACCAAAC	.	67.0	24.0	52.0	0.0	.	Atlas-SNP
ZNF354C	30832	hgsc.bcm.edu	37	5	178507040	178507040	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF354C-91	NM_014594	exon5	c.G1607A	p.S536N	TCTGCAGCTCCTC	.	113.0	50.0	104.0	0.0	.	Atlas-SNP
OR2V2	285659	hgsc.bcm.edu	37	5	180582175	180582175	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	OR2V2-69	NM_206880	exon1	c.A233C	p.N78T	GTACCAATGTGCC	.	190.0	69.0	143.0	0.0	.	Atlas-SNP
NNT	23530	hgsc.bcm.edu	37	5	43619202	43619203	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NNT-92	NM_012343	exon5	c.668_669insA	p.G223fs	.	.	27.0	10.0	42.0	0.0	.	Atlas-Indel
LARS	51520	hgsc.bcm.edu	37	5	145524102	145524103	+	Splice_Site	INS	-	-	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LARS-90	NM_020117	exon18	c.1590-2->C	.	.	.	147.0	67.0	109.0	0.0	.	Atlas-Indel
GALNT10	55568	hgsc.bcm.edu	37	5	153760166	153760166	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GALNT10-92	NM_198321	exon6	c.912delG	p.Q304fs	.	.	127.0	61.0	85.0	0.0	.	Atlas-Indel
LARP1	23367	hgsc.bcm.edu	37	5	154173383	154173383	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LARP1-94	NM_015315	exon6	c.660delG	p.V220fs	.	.	113.0	45.0	84.0	0.0	.	Atlas-Indel
LARP1	23367	hgsc.bcm.edu	37	5	154173390	154173390	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LARP1-94	NM_015315	exon6	c.667delG	p.A223fs	.	.	117.0	46.0	79.0	0.0	.	Atlas-Indel
COL4A3BP	10087	hgsc.bcm.edu	37	5	74807619	74807621	+	In_Frame_Del	DEL	AGG	AGG	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	AGG	AGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	COL4A3BP-226	NM_001130105	exon1	c.50_52del	p.17_18del	.	.	128.0	30.0	120.0	0.0	.	Pindel
RELL2	285613	hgsc.bcm.edu	37	5	141017910	141017912	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	AAG	AAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RELL2-90	NM_173828	exon1	c.117_119del	p.39_40del	.	.	105.0	27.0	92.0	0.0	.	Pindel
TTC1	7265	hgsc.bcm.edu	37	5	159437837	159437837	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TTC1-91	NM_003314	exon2	c.301delG	p.E101fs	.	.	203.0	54.0	150.0	0.0	.	Pindel
LARP1	23367	hgsc.bcm.edu	37	5	154173385	154173390	+	In_Frame_Del	DEL	CGTGGC	CGTGGC	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	CGTGGC	CGTGGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LARP1-94	NM_015315	exon6	c.662_667del	p.221_223del	.	.	117.0	33.0	85.0	0.0	.	Pindel
SERPINB1	1992	hgsc.bcm.edu	37	6	2836398	2836398	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SERPINB1-292	NM_030666	exon5	c.T511C	p.W171R	CCTTCCAGTTTCC	.	70.0	28.0	66.0	0.0	.	Atlas-SNP
BMP6	654	hgsc.bcm.edu	37	6	7880448	7880448	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	BMP6-578	NM_001718	exon7	c.T1414C	p.Y472H	CCCGAGTATGTCC	.	289.0	111.0	217.0	0.0	.	Atlas-SNP
KDM1B	221656	hgsc.bcm.edu	37	6	18215282	18215282	+	Silent	SNP	C	C	T	rs144521010	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KDM1B-91	NM_153042	exon16	c.C1458T	p.V486V	GGCTGTCGCATCC	.	99.0	30.0	49.0	0.0	C|0.998;T|0.002	Atlas-SNP
CCHCR1	54535	hgsc.bcm.edu	37	6	31112778	31112778	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CCHCR1-91	NM_001105563	exon14	c.C1841T	p.S614F	GCCAGGGACTCCT	.	64.0	23.0	56.0	0.0	.	Atlas-SNP
HLA-DOB	3112	hgsc.bcm.edu	37	6	32782355	32782355	+	Missense_Mutation	SNP	G	G	A	rs201263357		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HLA-DOB-91	NM_002120	exon3	c.C385T	p.P129S	TCTCTGGGTACAC	.	163.0	58.0	137.0	0.0	.	Atlas-SNP
TAP1	6890	hgsc.bcm.edu	37	6	32820954	32820954	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TAP1-91	NM_000593	exon1	c.T640C	p.W214R	TGTGCCACAGGGC	.	145.0	59.0	86.0	0.0	.	Atlas-SNP
KIFC1	3833	hgsc.bcm.edu	37	6	33373046	33373046	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KIFC1-90	NM_002263	exon7	c.G1174A	p.A392T	GAGATTGCCATGC	.	84.0	34.0	91.0	0.0	.	Atlas-SNP
CUTA	51596	hgsc.bcm.edu	37	6	33385290	33385290	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CUTA-90	NM_001014838	exon2	c.C156T	p.C52C	GTTGGGGCAAGTA	.	162.0	82.0	146.0	0.0	.	Atlas-SNP
CUTA	51596	hgsc.bcm.edu	37	6	33385455	33385455	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CUTA-90	NM_001014433	exon2	c.T117C	p.S39S	AACAAAAGACAGG	.	74.0	29.0	55.0	0.0	.	Atlas-SNP
ITPR3	3710	hgsc.bcm.edu	37	6	33657170	33657170	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ITPR3-1085	NM_002224	exon50	c.A6850T	p.I2284F	CTCAACATCCTGG	.	82.0	35.0	48.0	0.0	.	Atlas-SNP
DNAH8	1769	hgsc.bcm.edu	37	6	38840860	38840860	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DNAH8-615	NM_001206927	exon51	c.G7416A	p.T2472T	TGCCACGGTTTCT	.	138.0	55.0	87.0	0.0	.	Atlas-SNP
NFYA	4800	hgsc.bcm.edu	37	6	41060791	41060791	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NFYA-226	NM_002505	exon8	c.A855G	p.L285L	TAAACTAGAGGCA	.	117.0	46.0	132.0	0.0	.	Atlas-SNP
UBR2	23304	hgsc.bcm.edu	37	6	42610157	42610157	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	UBR2-94	NM_015255	exon18	c.T2035A	p.Y679N	TAGATTTATTACT	.	32.0	18.0	23.0	0.0	.	Atlas-SNP
GLTSCR1L	23506	hgsc.bcm.edu	37	6	42797332	42797332	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_015349	exon5	c.A1261G	p.N421D	ACTATAAATGGGC	.	112.0	44.0	110.0	0.0	.	Atlas-SNP
GTPBP2	54676	hgsc.bcm.edu	37	6	43592287	43592287	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GTPBP2-92	NM_019096	exon7	c.G1060A	p.D354N	CGGCATCATCCTC	.	88.0	44.0	74.0	0.0	.	Atlas-SNP
SLC35B2	347734	hgsc.bcm.edu	37	6	44223336	44223336	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLC35B2-91	NM_178148	exon4	c.C406T	p.R136C	AGCTGCGGGTCAT	.	103.0	38.0	60.0	0.0	.	Atlas-SNP
TDRD6	221400	hgsc.bcm.edu	37	6	46658119	46658119	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TDRD6-138	NM_001010870	exon1	c.A2254T	p.M752L	CCTCTTATGCAGA	.	72.0	25.0	52.0	0.0	.	Atlas-SNP
C6orf141	135398	hgsc.bcm.edu	37	6	49518618	49518618	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001145652	exon1	c.G113A	p.R38H	TAGGGCGCGGGGC	.	51.0	26.0	31.0	0.0	.	Atlas-SNP
PKHD1	5314	hgsc.bcm.edu	37	6	51695744	51695744	+	Silent	SNP	A	A	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PKHD1-603	NM_170724	exon52	c.T8217G	p.P2739P	TGTTTCAGGGAGG	.	100.0	39.0	89.0	0.0	.	Atlas-SNP
MLIP	90523	hgsc.bcm.edu	37	6	53883833	53883833	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MLIP-99	NM_138569	exon1	c.C7T	p.L3F	ATGGAACTTGAAA	.	145.0	58.0	145.0	0.0	.	Atlas-SNP
HMGCLL1	54511	hgsc.bcm.edu	37	6	55304258	55304258	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HMGCLL1-94	NM_019036	exon9	c.A985T	p.M329L	TAAGCATATATAT	.	80.0	35.0	90.0	0.0	.	Atlas-SNP
DST	667	hgsc.bcm.edu	37	6	56371582	56371582	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DST-523	NM_015548	exon57	c.A11376G	p.I3792M	TTCCCTTATGGTC	.	90.0	39.0	62.0	0.0	.	Atlas-SNP
FAM135A	57579	hgsc.bcm.edu	37	6	71138076	71138076	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FAM135A-90	NM_001162529	exon2	c.T31A	p.S11T	GAATTCTCTGTGG	.	44.0	20.0	45.0	0.0	.	Atlas-SNP
RIMS1	22999	hgsc.bcm.edu	37	6	72960679	72960679	+	Missense_Mutation	SNP	A	A	G	rs201901272	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RIMS1-144	NM_001168409	exon9	c.A607G	p.N203D	AAATGGAATCAAA	.	139.0	63.0	111.0	0.0	A|0.999;T|0.000	Atlas-SNP
RIMS1	22999	hgsc.bcm.edu	37	6	72968725	72968725	+	Silent	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RIMS1-144	NM_001168409	exon13	c.T1143A	p.R381R	GTCACGTTCTCCA	.	108.0	54.0	74.0	0.0	.	Atlas-SNP
RIMS1	22999	hgsc.bcm.edu	37	6	73000437	73000437	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RIMS1-144	NM_014989	exon25	c.C3610T	p.Q1204X	ACTGATCAGCCAG	.	122.0	47.0	115.0	0.0	.	Atlas-SNP
SENP6	26054	hgsc.bcm.edu	37	6	76380283	76380283	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SENP6-660	NM_015571	exon11	c.T1239C	p.I413I	TTCTATTATCAAC	.	46.0	19.0	30.0	0.0	.	Atlas-SNP
HMGN3	9324	hgsc.bcm.edu	37	6	79913320	79913320	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HMGN3-226	NM_001201363	exon4	c.A124T	p.K42X	TTGGTTTGGGTTC	.	85.0	37.0	62.0	0.0	.	Atlas-SNP
ZNF292	23036	hgsc.bcm.edu	37	6	87967774	87967774	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF292-72	NM_015021	exon8	c.C4427T	p.T1476I	GTGTGACTAACTT	.	74.0	31.0	101.0	0.0	.	Atlas-SNP
MDN1	23195	hgsc.bcm.edu	37	6	90377855	90377855	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MDN1-100	NM_014611	exon84	c.A13972G	p.K4658E	ATTCTTTGGGCAA	.	44.0	19.0	61.0	0.0	.	Atlas-SNP
SOBP	55084	hgsc.bcm.edu	37	6	107811894	107811894	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SOBP-91	NM_018013	exon1	c.G74A	p.R25K	TGAAAAGGGAGAT	.	131.0	58.0	99.0	0.0	.	Atlas-SNP
ZBTB24	9841	hgsc.bcm.edu	37	6	109798048	109798048	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZBTB24-92	NM_014797	exon3	c.C1038T	p.G346G	CCGCTCGCCTGTG	.	146.0	53.0	93.0	0.0	.	Atlas-SNP
HS3ST5	222537	hgsc.bcm.edu	37	6	114378976	114378976	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HS3ST5-92	NM_153612	exon2	c.A486G	p.T162T	CTCCTCTGTGATA	.	103.0	54.0	92.0	0.0	.	Atlas-SNP
ROS1	6098	hgsc.bcm.edu	37	6	117665330	117665330	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ROS1-1353	NM_002944	exon27	c.A4417G	p.T1473A	GGTTTGTCTTGGC	.	199.0	84.0	135.0	0.0	.	Atlas-SNP
HEY2	23493	hgsc.bcm.edu	37	6	126080476	126080476	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HEY2-658	NM_012259	exon5	c.A542G	p.H181R	CGCTCCACCCGCA	.	69.0	31.0	56.0	0.0	.	Atlas-SNP
CENPW	387103	hgsc.bcm.edu	37	6	126667370	126667370	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CENPW-90	NM_001012507	exon2	c.T146G	p.L49R	GTTTACTGTTTGT	.	83.0	39.0	71.0	0.0	.	Atlas-SNP
LAMA2	3908	hgsc.bcm.edu	37	6	129204502	129204502	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LAMA2-162	NM_001079823	exon1	c.G112C	p.G38R	CAAAGAGGTACAG	.	134.0	58.0	68.0	0.0	.	Atlas-SNP
ARHGAP18	93663	hgsc.bcm.edu	37	6	129950582	129950582	+	Silent	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ARHGAP18-230	NM_033515	exon5	c.A702T	p.V234V	AAATGATACCTCC	.	59.0	30.0	43.0	0.0	.	Atlas-SNP
MOXD1	26002	hgsc.bcm.edu	37	6	132645213	132645213	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MOXD1-515	NM_015529	exon7	c.A970T	p.R324W	ATAACCTCAGTCC	.	131.0	42.0	110.0	0.0	.	Atlas-SNP
IL20RA	53832	hgsc.bcm.edu	37	6	137329836	137329836	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	IL20RA-94	NM_014432	exon5	c.G624A	p.L208L	CGGCTCCAGCCAG	.	108.0	36.0	79.0	0.0	.	Atlas-SNP
REPS1	85021	hgsc.bcm.edu	37	6	139237076	139237076	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	REPS1-522	NM_031922	exon14	c.C1636G	p.P546A	GAGGTGGTGGTGC	.	173.0	90.0	87.0	0.0	.	Atlas-SNP
HECA	51696	hgsc.bcm.edu	37	6	139488123	139488123	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HECA-90	NM_016217	exon2	c.G974A	p.S325N	ATTACAGCCCTGC	.	33.0	14.0	29.0	0.0	.	Atlas-SNP
HIVEP2	3097	hgsc.bcm.edu	37	6	143074762	143074762	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HIVEP2-95	NM_006734	exon10	c.C6823A	p.P2275T	CATAGGGGTCCTT	.	81.0	40.0	83.0	0.0	.	Atlas-SNP
UTRN	7402	hgsc.bcm.edu	37	6	145160331	145160331	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	UTRN-95	NM_007124	exon71	c.A10088G	p.N3363S	GAATCAATGGTGT	.	31.0	10.0	28.0	0.0	.	Atlas-SNP
SHPRH	257218	hgsc.bcm.edu	37	6	146214396	146214396	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SHPRH-92	NM_173082	exon28	c.A4841G	p.H1614R	AGCTCATGGGCAG	.	155.0	72.0	95.0	0.0	.	Atlas-SNP
SHPRH	257218	hgsc.bcm.edu	37	6	146248371	146248371	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SHPRH-92	NM_173082	exon15	c.G3182A	p.R1061H	GAGGAGCGCAACA	.	47.0	7.0	53.0	0.0	.	Atlas-SNP
AKAP12	9590	hgsc.bcm.edu	37	6	151672050	151672050	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	AKAP12-293	NM_005100	exon4	c.G2524T	p.D842Y	GACTCTGATGTCC	.	317.0	131.0	243.0	1.0	.	Atlas-SNP
AKAP12	9590	hgsc.bcm.edu	37	6	151673402	151673402	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	AKAP12-293	NM_005100	exon4	c.A3876G	p.I1292M	AGGCATAACAGTC	.	239.0	107.0	137.0	0.0	.	Atlas-SNP
CNKSR3	154043	hgsc.bcm.edu	37	6	154732089	154732089	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CNKSR3-26	NM_173515	exon11	c.A1258T	p.R420X	TCTCTCTCATTTT	.	113.0	40.0	110.0	0.0	.	Atlas-SNP
SYTL3	94120	hgsc.bcm.edu	37	6	159166688	159166688	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SYTL3-90	NM_001242394	exon12	c.T1032A	p.N344K	GTGCAATCCGTAA	.	41.0	15.0	44.0	0.0	.	Atlas-SNP
MAP3K4	4216	hgsc.bcm.edu	37	6	161510389	161510389	+	Silent	SNP	G	G	A	rs186715923		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MAP3K4-548	NM_006724	exon11	c.G2859A	p.A953A	GTCTGCGCATCTC	.	89.0	29.0	63.0	0.0	G|0.999;A|0.000	Atlas-SNP
QKI	9444	hgsc.bcm.edu	37	6	163984721	163984721	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	QKI-290	NM_206855	exon6	c.G904C	p.E302Q	ATCCTTGAGTATC	.	82.0	39.0	95.0	0.0	.	Atlas-SNP
FGFR1OP	11116	hgsc.bcm.edu	37	6	167417212	167417212	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FGFR1OP-683	NM_194429	exon4	c.T213C	p.G71G	TATAGGTCGTTTA	.	53.0	23.0	47.0	0.0	.	Atlas-SNP
CCR6	1235	hgsc.bcm.edu	37	6	167549924	167549924	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CCR6-227	NM_004367	exon3	c.T206A	p.I69N	TGGTGATCACCTT	.	199.0	76.0	160.0	0.0	.	Atlas-SNP
CCR6	1235	hgsc.bcm.edu	37	6	167550007	167550007	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CCR6-227	NM_004367	exon3	c.C289G	p.L97V	TTTGTTCTTACTC	.	141.0	56.0	131.0	0.0	.	Atlas-SNP
THBS2	7058	hgsc.bcm.edu	37	6	169622343	169622343	+	Silent	SNP	C	C	T	rs149118318		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	THBS2-95	NM_003247	exon20	c.G3222A	p.T1074T	CTCGCCCGTCCCC	.	107.0	45.0	77.0	0.0	C|1.000;T|0.000	Atlas-SNP
THBS2	7058	hgsc.bcm.edu	37	6	169648601	169648601	+	Missense_Mutation	SNP	C	C	T	rs144458205	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	THBS2-95	NM_003247	exon4	c.G520A	p.A174T	CCAGAGCGAAGCT	.	182.0	65.0	145.0	0.0	C|1.000;A|0.000	Atlas-SNP
PSMB1	5689	hgsc.bcm.edu	37	6	170862286	170862286	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PSMB1-91	NM_002793	exon1	c.G45T	p.L15F	CATCCCCAAGTCT	.	59.0	25.0	63.0	0.0	.	Atlas-SNP
VARS	7407	hgsc.bcm.edu	37	6	31747403	31747403	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	VARS-93	NM_006295	exon27	c.3271delT	p.Y1091fs	.	.	126.0	58.0	76.0	0.0	.	Atlas-Indel
ANKS1A	23294	hgsc.bcm.edu	37	6	34951143	34951143	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ANKS1A-94	NM_015245	exon7	c.952delA	p.T318fs	.	.	26.0	11.0	44.0	0.0	.	Atlas-Indel
GPR115	221393	hgsc.bcm.edu	37	6	47680311	47680312	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GPR115-160	NM_153838	exon5	c.519_520insT	p.D173fs	.	.	83.0	23.0	50.0	0.0	.	Atlas-Indel
GSTA2	2939	hgsc.bcm.edu	37	6	52615481	52615482	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GSTA2-91	NM_000846	exon7	c.563_564insA	p.I188fs	.	.	76.0	35.0	86.0	0.0	.	Atlas-Indel
DST	667	hgsc.bcm.edu	37	6	56481544	56481545	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DST-523	NM_001723	exon24	c.6721_6722insA	p.G2241fs	.	.	95.0	40.0	62.0	0.0	.	Atlas-Indel
LAMA4	3910	hgsc.bcm.edu	37	6	112441533	112441534	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LAMA4-140	NM_001105206	exon33	c.4618_4619insA	p.L1540fs	.	.	60.0	21.0	44.0	0.0	.	Atlas-Indel
SYNE1	23345	hgsc.bcm.edu	37	6	152552705	152552705	+	Splice_Site	DEL	A	A	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SYNE1-607	NM_033071	exon114	c.20650-2T>-	.	.	.	37.0	13.0	53.0	0.0	.	Atlas-Indel
HIST1H2BE	8344	hgsc.bcm.edu	37	6	26184051	26184052	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HIST1H2BE-90	NM_003523	exon1	c.28_29insC	p.A10fs	.	.	246.0	44.0	198.0	0.0	.	Pindel
GPR146	115330	hgsc.bcm.edu	37	7	1097616	1097616	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GPR146-91	NM_138445	exon1	c.G465A	p.A155A	TGGCGCGCTGCTG	.	119.0	57.0	59.0	0.0	.	Atlas-SNP
ELFN1	392617	hgsc.bcm.edu	37	7	1784587	1784587	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001128636	exon2	c.C355T	p.R119W	TACAACCGGCTGC	.	146.0	59.0	125.0	0.0	.	Atlas-SNP
SDK1	221935	hgsc.bcm.edu	37	7	4285348	4285348	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SDK1-138	NM_001079653	exon18	c.G1753A	p.D585N	TACTCAGACGAGG	.	155.0	54.0	102.0	0.0	.	Atlas-SNP
SLC29A4	222962	hgsc.bcm.edu	37	7	5330852	5330852	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLC29A4-515	NM_153247	exon4	c.C399A	p.H133Q	CCTGCACACCAGG	.	96.0	44.0	83.0	0.0	.	Atlas-SNP
GLCCI1	113263	hgsc.bcm.edu	37	7	8124630	8124630	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GLCCI1-90	NM_138426	exon7	c.G1281A	p.K427K	AGTGAAGGTCTTT	.	132.0	49.0	120.0	0.0	.	Atlas-SNP
HDAC9	9734	hgsc.bcm.edu	37	7	18625005	18625005	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HDAC9-227	NM_001204147	exon2	c.C31T	p.R11C	GTTGTCCGTGAGA	.	159.0	74.0	115.0	0.0	.	Atlas-SNP
MACC1	346389	hgsc.bcm.edu	37	7	20180768	20180768	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MACC1-93	NM_182762	exon7	c.C2360A	p.P787H	TAGGCAGGTTTCC	.	21.0	7.0	13.0	0.0	.	Atlas-SNP
ADCYAP1R1	117	hgsc.bcm.edu	37	7	31117638	31117638	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ADCYAP1R1-91	NM_001199636	exon4	c.T190G	p.W64G	ACGTGTTGGAAGC	.	329.0	124.0	266.0	1.0	.	Atlas-SNP
ANLN	54443	hgsc.bcm.edu	37	7	36450230	36450230	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ANLN-517	NM_018685	exon6	c.C1204T	p.P402S	ATTACTCCAAATA	.	154.0	57.0	111.0	0.0	.	Atlas-SNP
NACAD	23148	hgsc.bcm.edu	37	7	45124123	45124123	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001146334	exon2	c.A1656G	p.E552E	GCTTGTTTCTTCC	.	157.0	63.0	117.0	0.0	.	Atlas-SNP
NACAD	23148	hgsc.bcm.edu	37	7	45124945	45124945	+	Silent	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001146334	exon2	c.C834A	p.S278S	GAGGCTGGACTCA	.	126.0	52.0	115.0	0.0	.	Atlas-SNP
NACAD	23148	hgsc.bcm.edu	37	7	45124952	45124952	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001146334	exon2	c.C827G	p.S276C	GACTCAGAGGACG	.	120.0	50.0	107.0	0.0	.	Atlas-SNP
NACAD	23148	hgsc.bcm.edu	37	7	45125542	45125542	+	Silent	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001146334	exon2	c.A237T	p.A79A	CGAGGGTGCCCCA	.	67.0	21.0	11.0	0.0	.	Atlas-SNP
TBRG4	9238	hgsc.bcm.edu	37	7	45144212	45144212	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TBRG4-90	NM_004749	exon4	c.G832A	p.A278T	AGATGGCCCGCAG	.	331.0	151.0	243.0	0.0	.	Atlas-SNP
IGFBP3	3486	hgsc.bcm.edu	37	7	45954540	45954540	+	Missense_Mutation	SNP	C	C	T	rs17847676		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	IGFBP3,colon,carcinoma,-1	IGFBP3-1009	NM_000598	exon4	c.G755A	p.R252H	GAAGGGCGACACT	.	124.0	45.0	92.0	0.0	.	Atlas-SNP
PKD1L1	168507	hgsc.bcm.edu	37	7	47983029	47983029	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PKD1L1-145	NM_138295	exon2	c.T124C	p.C42R	AGCTGCACAGATG	.	343.0	138.0	271.0	0.0	.	Atlas-SNP
ABCA13	154664	hgsc.bcm.edu	37	7	48311465	48311465	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ABCA13-521	NM_152701	exon17	c.A2202G	p.L734L	TCTTTTATCATTT	.	69.0	34.0	79.0	0.0	.	Atlas-SNP
COBL	23242	hgsc.bcm.edu	37	7	51096471	51096471	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	COBL-95	NM_015198	exon10	c.C2322T	p.N774N	CACAGAGTTGCAC	.	88.0	36.0	59.0	0.0	.	Atlas-SNP
AUTS2	26053	hgsc.bcm.edu	37	7	70255628	70255628	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	AUTS2-92	NM_015570	exon19	c.G3426A	p.E1142E	GCGGGAGCACGAG	.	113.0	49.0	53.0	0.0	.	Atlas-SNP
TBL2	26608	hgsc.bcm.edu	37	7	72985169	72985169	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TBL2-90	NM_012453	exon7	c.G1012A	p.A338T	AGAGGGCCAGGCG	.	58.0	23.0	32.0	0.0	.	Atlas-SNP
KIAA1324L	222223	hgsc.bcm.edu	37	7	86537770	86537770	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KIAA1324L-97	NM_152748	exon16	c.T1948C	p.F650L	TATAAAAGAAATG	.	46.0	17.0	33.0	0.0	.	Atlas-SNP
ZNF804B	219578	hgsc.bcm.edu	37	7	88963113	88963113	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF804B-101	NM_181646	exon4	c.A817G	p.T273A	AAAGATACACACC	.	131.0	66.0	121.0	0.0	.	Atlas-SNP
PEX1	5189	hgsc.bcm.edu	37	7	92134188	92134188	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PEX1-91	NM_000466	exon12	c.C1929T	p.T643T	CTCTAGGGTTTTT	.	64.0	22.0	62.0	0.0	.	Atlas-SNP
TRIM4	89122	hgsc.bcm.edu	37	7	99507254	99507254	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TRIM4-227	NM_033017	exon3	c.C501T	p.L167L	GGCCACGAGATTA	.	182.0	76.0	140.0	0.0	.	Atlas-SNP
COPS6	10980	hgsc.bcm.edu	37	7	99688715	99688715	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	COPS6-658	NM_006833	exon7	c.C589T	p.R197C	GCGGAACGCATTG	.	146.0	14.0	105.0	0.0	.	Atlas-SNP
ACHE	43	hgsc.bcm.edu	37	7	100490017	100490017	+	Silent	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ACHE-92	NM_000665	exon3	c.G1491T	p.T497T	CTCTGCCGTGTAG	.	126.0	8.0	89.0	0.0	.	Atlas-SNP
ATXN7L1	222255	hgsc.bcm.edu	37	7	105255170	105255170	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ATXN7L1-90	NM_020725	exon10	c.C1611T	p.N537N	ACTGGGGTTGCTG	.	136.0	53.0	117.0	0.0	.	Atlas-SNP
PIK3CG	5294	hgsc.bcm.edu	37	7	106508801	106508801	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PIK3CG-1316	NM_002649	exon2	c.A795G	p.Q265Q	AAGCCAAAGCGAA	.	86.0	35.0	77.0	0.0	.	Atlas-SNP
COG5	10466	hgsc.bcm.edu	37	7	106844034	106844034	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	COG5-93	NM_006348	exon22	c.A2510G	p.E837G	TTGCCTTCTCTAC	.	80.0	32.0	75.0	0.0	.	Atlas-SNP
DUS4L	11062	hgsc.bcm.edu	37	7	107217974	107217974	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DUS4L-90	NM_001270419	exon8	c.T923C	p.I308T	CAATCATAGATTA	.	116.0	47.0	125.0	0.0	.	Atlas-SNP
LAMB4	22798	hgsc.bcm.edu	37	7	107696427	107696427	+	Silent	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LAMB4-140	NM_007356	exon25	c.C3405A	p.T1135T	CTTCTGGGTACCT	.	91.0	45.0	68.0	0.0	.	Atlas-SNP
PNPLA8	50640	hgsc.bcm.edu	37	7	108112846	108112846	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PNPLA8-135	NM_001256010	exon10	c.G2048A	p.X683X	ACTCATCACAATT	.	259.0	94.0	210.0	0.0	.	Atlas-SNP
MDFIC	29969	hgsc.bcm.edu	37	7	114655908	114655908	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MDFIC-91	NM_199072	exon5	c.T987C	p.C329C	GGACTGTGGCATC	.	113.0	45.0	89.0	0.0	.	Atlas-SNP
PTPRZ1	5803	hgsc.bcm.edu	37	7	121608015	121608015	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PTPRZ1-699	NM_001206838	exon3	c.T135A	p.N45K	ACTGAATCAAAAA	.	130.0	58.0	104.0	0.0	.	Atlas-SNP
GPR37	2861	hgsc.bcm.edu	37	7	124404170	124404170	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GPR37-523	NM_005302	exon1	c.C861T	p.C287C	GTTGTGGCACACG	.	162.0	58.0	127.0	0.0	.	Atlas-SNP
GRM8	2918	hgsc.bcm.edu	37	7	126086177	126086177	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GRM8-581	NM_001127323	exon10	c.A2680G	p.K894E	ATGACTTACTGTT	.	150.0	71.0	117.0	0.0	.	Atlas-SNP
IMPDH1	3614	hgsc.bcm.edu	37	7	128038611	128038611	+	Missense_Mutation	SNP	C	C	T	rs121912550		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	IMPDH1-230	NM_000883	exon10	c.G931A	p.D311N	TCAGGTCGGTGCG	.	118.0	54.0	91.0	0.0	.	Atlas-SNP
LRGUK	136332	hgsc.bcm.edu	37	7	133842788	133842788	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LRGUK-227	NM_144648	exon6	c.G671A	p.G224D	GTATAGGCAATGA	.	114.0	37.0	85.0	0.0	.	Atlas-SNP
NUP205	23165	hgsc.bcm.edu	37	7	135262571	135262571	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NUP205-207	NM_015135	exon6	c.C676T	p.Q226X	TGCAGGCAGTCTC	.	108.0	44.0	57.0	0.0	.	Atlas-SNP
TBXAS1	6916	hgsc.bcm.edu	37	7	139655387	139655387	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TBXAS1-155	NM_001061	exon7	c.A672G	p.R224R	CCCCAGACCTATC	.	75.0	30.0	43.0	0.0	.	Atlas-SNP
DENND2A	27147	hgsc.bcm.edu	37	7	140246681	140246681	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DENND2A-138	NM_015689	exon11	c.T2096A	p.M699K	CTTCTCATGAGTG	.	182.0	73.0	150.0	0.0	.	Atlas-SNP
AGK	55750	hgsc.bcm.edu	37	7	141333740	141333740	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	AGK-290	NM_018238	exon10	c.C628T	p.R210X	GGCCTTCGATGGG	.	84.0	35.0	74.0	0.0	.	Atlas-SNP
MGAM	8972	hgsc.bcm.edu	37	7	141736707	141736707	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MGAM-70	NM_004668	exon18	c.C2161T	p.P721S	CTATTGCCCTACC	.	104.0	48.0	107.0	0.0	.	Atlas-SNP
EPHB6	2051	hgsc.bcm.edu	37	7	142562373	142562373	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	EPHB6-1489	NM_004445	exon7	c.G815A	p.G272E	AGGATGGAGTAGG	.	102.0	26.0	53.0	0.0	.	Atlas-SNP
EPHA1	2041	hgsc.bcm.edu	37	7	143088818	143088818	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	EPHA1-1436	NM_005232	exon17	c.G2747A	p.R916Q	ACGGTTCGATATG	.	136.0	8.0	116.0	0.0	.	Atlas-SNP
OR2F2	135948	hgsc.bcm.edu	37	7	143632752	143632752	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	OR2F2-94	NM_001004685	exon1	c.A427G	p.R143G	TGTGCTAGGTTGG	.	342.0	136.0	273.0	1.0	.	Atlas-SNP
REPIN1	29803	hgsc.bcm.edu	37	7	150069842	150069842	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	REPIN1-69	NM_001099695	exon3	c.G1683A	p.S561S	GGTGTCGCACCGG	.	149.0	64.0	48.0	0.0	.	Atlas-SNP
GIMAP8	155038	hgsc.bcm.edu	37	7	150174335	150174335	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GIMAP8-95	NM_175571	exon5	c.G1465A	p.V489M	CAGGAGGTGGTGG	.	212.0	83.0	162.0	0.0	.	Atlas-SNP
SLC4A2	6522	hgsc.bcm.edu	37	7	150771569	150771569	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLC4A2-90	NM_001199694	exon17	c.T2832C	p.Y944Y	CACCTATACCCAG	.	90.0	39.0	91.0	0.0	.	Atlas-SNP
SHH	6469	hgsc.bcm.edu	37	7	155596348	155596348	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SHH-1134	NM_000193	exon3	c.C635T	p.T212I	AGCTTGGTGCCGC	.	81.0	36.0	15.0	0.0	.	Atlas-SNP
RSPH10B2	728194	hgsc.bcm.edu	37	7	6006678	6006679	+	Frame_Shift_Ins	INS	-	-	AG	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RSPH10B2-71	NM_001099697	exon3	c.70_71insCT	p.D24fs	.	.	292.0	59.0	251.0	0.0	.	Atlas-Indel
RSPH10B2	728194	hgsc.bcm.edu	37	7	6797368	6797369	+	Frame_Shift_Ins	INS	-	-	TC	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RSPH10B2-71	NM_001099697	exon3	c.60_61insTC	p.S20fs	.	.	158.0	32.0	116.0	0.0	.	Atlas-Indel
RAMP3	10268	hgsc.bcm.edu	37	7	45222787	45222787	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RAMP3-90	NM_005856	exon3	c.222delG	p.E74fs	.	.	56.0	22.0	43.0	0.0	.	Atlas-Indel
TMEM60	85025	hgsc.bcm.edu	37	7	77423460	77423460	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TMEM60-90	NM_032936	exon2	c.232delG	p.A78fs	.	.	105.0	45.0	68.0	0.0	.	Atlas-Indel
ZNF394	84124	hgsc.bcm.edu	37	7	99091800	99091800	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF394-90	NM_032164	exon3	c.1039delG	p.E347fs	.	.	237.0	107.0	191.0	0.0	.	Atlas-Indel
FAM200A	221786	hgsc.bcm.edu	37	7	99144838	99144839	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FAM200A-90	NM_145111	exon2	c.1193_1194del	p.398_398del	.	.	108.0	39.0	69.0	0.0	.	Atlas-Indel
NAPEPLD	222236	hgsc.bcm.edu	37	7	102760123	102760123	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NAPEPLD-227	NM_198990	exon3	c.843delC	p.F281fs	.	.	57.0	31.0	38.0	0.0	.	Atlas-Indel
SSPO	23145	hgsc.bcm.edu	37	7	149508059	149508059	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_198455	exon66	c.9452delA	p.Y3151fs	.	.	82.0	32.0	58.0	0.0	.	Atlas-Indel
TWISTNB	221830	hgsc.bcm.edu	37	7	19739713	19739713	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TWISTNB-91	NM_001002926	exon3	c.588delA	p.G196fs	.	.	69.0	19.0	84.0	0.0	.	Pindel
COBL	23242	hgsc.bcm.edu	37	7	51287561	51287562	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	COBL-95	NM_015198	exon2	c.122_123insC	p.H41fs	.	.	138.0	32.0	138.0	0.0	.	Pindel
CSMD1	64478	hgsc.bcm.edu	37	8	2909997	2909997	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CSMD1-86	NM_033225	exon50	c.G7647A	p.P2549P	CGTGGGCGGCTTC	.	72.0	5.0	89.0	0.0	.	Atlas-SNP
RP1L1	94137	hgsc.bcm.edu	37	8	10465815	10465815	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RP1L1-139	NM_178857	exon4	c.C5793T	p.D1931D	TGGCTCGTCCTCC	.	26.0	18.0	40.0	0.0	.	Atlas-SNP
LONRF1	91694	hgsc.bcm.edu	37	8	12580711	12580711	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LONRF1-91	NM_152271	exon12	c.T2216C	p.V739A	GGGTCTACAGGGA	.	51.0	37.0	105.0	0.0	.	Atlas-SNP
NEFM	4741	hgsc.bcm.edu	37	8	24775356	24775356	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NEFM-577	NM_001105541	exon3	c.A860G	p.E287G	TGGAAGAGAAAGG	.	175.0	132.0	222.0	0.0	.	Atlas-SNP
CDCA2	157313	hgsc.bcm.edu	37	8	25364499	25364499	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CDCA2-90	NM_152562	exon15	c.G2317A	p.A773T	GGAGCTGCAGAAG	.	43.0	38.0	50.0	0.0	.	Atlas-SNP
NRG1	3084	hgsc.bcm.edu	37	8	32620757	32620757	+	Silent	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NRG1-525	NM_001159996	exon8	c.A828T	p.L276L	TGAGCTAAGGAGA	.	106.0	79.0	150.0	0.0	.	Atlas-SNP
STAR	6770	hgsc.bcm.edu	37	8	38003893	38003893	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	STAR-91	NM_000349	exon4	c.G379T	p.D127Y	GCTGGTCCACCAC	.	48.0	36.0	73.0	0.0	.	Atlas-SNP
ANK1	286	hgsc.bcm.edu	37	8	41566384	41566384	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ANK1-716	NM_020475	exon17	c.C1910T	p.T637M	AGGGGCGTCACAC	.	65.0	47.0	93.0	0.0	.	Atlas-SNP
PRKDC	5591	hgsc.bcm.edu	37	8	48689404	48689404	+	Splice_Site	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PRKDC-1515	NM_001081640	exon85	c.12088+1G>A	.	ATCTTACCAAGTA	.	31.0	21.0	58.0	0.0	.	Atlas-SNP
ST18	9705	hgsc.bcm.edu	37	8	53044610	53044610	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ST18-95	NM_014682	exon22	c.C2574T	p.S858S	TTTCCAGGAGAGG	.	121.0	90.0	217.0	0.0	.	Atlas-SNP
IMPAD1	54928	hgsc.bcm.edu	37	8	57905818	57905818	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	IMPAD1-91	NM_017813	exon1	c.C327T	p.G109G	CACGTCGCCGCTG	.	29.0	21.0	36.0	0.0	.	Atlas-SNP
C8orf44-SGK3	0	hgsc.bcm.edu	37	8	67755735	67755735	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001204173	exon16	c.G1027A	p.D343N	ACTGTAGATTGGT	.	78.0	60.0	97.0	0.0	.	Atlas-SNP
PRDM14	63978	hgsc.bcm.edu	37	8	70981595	70981595	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PRDM14-93	NM_024504	exon2	c.C501T	p.S167S	TAACTGGGAGGTC	.	140.0	114.0	194.0	0.0	.	Atlas-SNP
NCOA2	10499	hgsc.bcm.edu	37	8	71057034	71057034	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NCOA2-639	NM_006540	exon13	c.G2655A	p.Q885Q	TAAATTCTGGTTT	.	116.0	91.0	212.0	1.0	.	Atlas-SNP
TRPA1	8989	hgsc.bcm.edu	37	8	72977700	72977700	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TRPA1-230	NM_007332	exon4	c.G538A	p.A180T	GCAATGCTTCGCT	.	98.0	84.0	164.0	0.0	.	Atlas-SNP
KCNB2	9312	hgsc.bcm.edu	37	8	73848647	73848647	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KCNB2-158	NM_004770	exon3	c.G1057A	p.V353I	AGCCTGGTATTTT	.	96.0	68.0	135.0	0.0	.	Atlas-SNP
WWP1	11059	hgsc.bcm.edu	37	8	87443898	87443898	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	WWP1-659	NM_007013	exon14	c.A1527C	p.E509D	TCGTGAAGGTGTA	.	141.0	113.0	250.0	0.0	.	Atlas-SNP
OSGIN2	734	hgsc.bcm.edu	37	8	90937358	90937358	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	OSGIN2-68	NM_004337	exon6	c.A1116G	p.L372L	TCTTTTATCTGAT	.	41.0	30.0	78.0	0.0	.	Atlas-SNP
RUNX1T1	862	hgsc.bcm.edu	37	8	93023263	93023263	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RUNX1T1-1196	NM_001198626	exon6	c.C525T	p.F175F	CAGTGGGAAGTTA	.	62.0	42.0	120.0	0.0	.	Atlas-SNP
RUNX1T1	862	hgsc.bcm.edu	37	8	93029539	93029539	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RUNX1T1-1196	NM_001198626	exon4	c.G141A	p.T47T	AGATTGCGTCTTC	.	107.0	79.0	144.0	1.0	.	Atlas-SNP
RNF19A	25897	hgsc.bcm.edu	37	8	101299882	101299882	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RNF19A-229	NM_015435	exon3	c.T521C	p.I174T	CAACTAATATTAA	.	50.0	42.0	61.0	0.0	.	Atlas-SNP
CSMD3	114788	hgsc.bcm.edu	37	8	114110996	114110996	+	Silent	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CSMD3-1132	NM_198123	exon5	c.A906T	p.P302P	GGTAGGTGGCTCA	.	60.0	49.0	63.0	0.0	.	Atlas-SNP
KIAA0196	9897	hgsc.bcm.edu	37	8	126067843	126067843	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KIAA0196-92	NM_014846	exon17	c.G2087T	p.G696V	ATGATGCCAACCA	.	47.0	37.0	99.0	0.0	.	Atlas-SNP
TG	7038	hgsc.bcm.edu	37	8	133900673	133900673	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TG-145	NM_003235	exon10	c.G2621A	p.G874D	TAAATGGCCAACT	.	100.0	80.0	128.0	0.0	.	Atlas-SNP
TG	7038	hgsc.bcm.edu	37	8	134146920	134146920	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TG-145	NM_003235	exon48	c.A8189G	p.D2730G	TTTCAGATGGAGC	.	46.0	31.0	69.0	0.0	.	Atlas-SNP
ZFAT	57623	hgsc.bcm.edu	37	8	135621018	135621018	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZFAT-90	NM_001174157	exon4	c.T553C	p.Y185H	TGGCGTATTCCTG	.	119.0	99.0	129.0	0.0	.	Atlas-SNP
PTK2	5747	hgsc.bcm.edu	37	8	141749130	141749130	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PTK2-1517	NM_001199649	exon21	c.C1812T	p.D604D	CCATACGTCACTA	.	30.0	20.0	36.0	0.0	.	Atlas-SNP
KIFC2	90990	hgsc.bcm.edu	37	8	145697998	145697998	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KIFC2-92	NM_145754	exon16	c.C1770T	p.A590A	CGCCGCCACCGCC	.	29.0	17.0	12.0	0.0	.	Atlas-SNP
KDM4C	23081	hgsc.bcm.edu	37	9	7049096	7049096	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KDM4C-228	NM_001146696	exon17	c.G2386C	p.A796P	AGGTGGGCCCATG	.	69.0	22.0	90.0	0.0	.	Atlas-SNP
KDM4C	23081	hgsc.bcm.edu	37	9	7049109	7049109	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KDM4C-228	NM_001146696	exon17	c.G2399T	p.C800F	TCATGTGCGCCGT	.	84.0	31.0	102.0	0.0	.	Atlas-SNP
FREM1	158326	hgsc.bcm.edu	37	9	14776240	14776240	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FREM1-138	NM_001177704	exon2	c.A12G	p.Q4Q	GGATTCTTGTGTC	.	146.0	63.0	120.0	0.0	.	Atlas-SNP
BNC2	54796	hgsc.bcm.edu	37	9	16436339	16436339	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	BNC2-92	NM_017637	exon6	c.T1853A	p.M618K	GTGGCCATCATCA	.	74.0	39.0	72.0	0.0	.	Atlas-SNP
SLC24A2	25769	hgsc.bcm.edu	37	9	19520911	19520911	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLC24A2-517	NM_020344	exon9	c.A1717T	p.I573F	CAAAAATGTTGCT	.	193.0	89.0	157.0	0.0	.	Atlas-SNP
CDKN2A	1029	hgsc.bcm.edu	37	9	21971150	21971150	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	CDKN2A,NS,malignant_melanoma,+1	CDKN2A-23992	NM_000077	exon2	c.C208A	p.P70T	AGTTGGGCTCCGC	.	36.0	12.0	9.0	0.0	.	Atlas-SNP
ANKRD18B	441459	hgsc.bcm.edu	37	9	33572356	33572356	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001244752	exon16	c.T3031C	p.X1011Q	CTTCTCTAGAATC	.	213.0	107.0	170.0	0.0	.	Atlas-SNP
TLN1	7094	hgsc.bcm.edu	37	9	35720206	35720206	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TLN1-609	NM_006289	exon13	c.C1294T	p.L432L	GCTGCAGGACTGT	.	142.0	33.0	93.0	0.0	.	Atlas-SNP
CCIN	881	hgsc.bcm.edu	37	9	36170340	36170340	+	Missense_Mutation	SNP	G	G	A	rs150485511		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CCIN-92	NM_005893	exon1	c.G841A	p.V281M	GATTCCGTGGTCA	.	111.0	49.0	81.0	0.0	G|1.000;A|0.000	Atlas-SNP
FRMPD1	22844	hgsc.bcm.edu	37	9	37745283	37745283	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FRMPD1-159	NM_014907	exon16	c.A3254G	p.D1085G	GAAGTGATGAATG	.	91.0	32.0	72.0	0.0	.	Atlas-SNP
CNTNAP3	79937	hgsc.bcm.edu	37	9	39109179	39109179	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CNTNAP3-91	NM_033655	exon15	c.G2343A	p.G781G	CAGTGGCCCCAGT	.	456.0	202.0	389.0	0.0	.	Atlas-SNP
PRKACG	5568	hgsc.bcm.edu	37	9	71628334	71628334	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PRKACG-1061	NM_002732	exon1	c.A675G	p.L225L	CACCCCTAGGGCC	.	105.0	47.0	69.0	0.0	.	Atlas-SNP
PRUNE2	158471	hgsc.bcm.edu	37	9	79325100	79325100	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PRUNE2-157	NM_015225	exon8	c.G2090A	p.R697K	GAGGCTCTCCTAT	.	64.0	29.0	47.0	0.0	.	Atlas-SNP
TLE4	7091	hgsc.bcm.edu	37	9	82267520	82267520	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TLE4-524	NM_007005	exon7	c.G403A	p.A135T	CTCCAGGCCCAGC	.	116.0	53.0	112.0	0.0	.	Atlas-SNP
TLE4	7091	hgsc.bcm.edu	37	9	82267635	82267635	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TLE4-524	NM_007005	exon7	c.C518T	p.S173F	CCCTCTCCAGTGC	.	96.0	43.0	74.0	0.0	.	Atlas-SNP
FRMD3	257019	hgsc.bcm.edu	37	9	85926825	85926825	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FRMD3-91	NM_001244959	exon8	c.T750A	p.N250K	TCTCTTATTTCCC	.	35.0	15.0	30.0	0.0	.	Atlas-SNP
AGTPBP1	23287	hgsc.bcm.edu	37	9	88248284	88248284	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	AGTPBP1-158	NM_015239	exon14	c.T1188C	p.Y396Y	TAAATCATAGTCC	.	29.0	19.0	36.0	0.0	.	Atlas-SNP
NAA35	60560	hgsc.bcm.edu	37	9	88576991	88576991	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NAA35-92	NM_024635	exon6	c.C412G	p.P138A	CATAATCCAGACT	.	78.0	39.0	91.0	0.0	.	Atlas-SNP
WNK2	65268	hgsc.bcm.edu	37	9	96051773	96051773	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	WNK2-765	NM_006648	exon19	c.C4737T	p.G1579G	GGTGGGCGACAGA	.	86.0	37.0	44.0	0.0	.	Atlas-SNP
PTCH1	5727	hgsc.bcm.edu	37	9	98244481	98244481	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PTCH1-3532	NM_001083605	exon4	c.T136C	p.W46R	ATTTCCACTGCCT	.	50.0	20.0	39.0	0.0	.	Atlas-SNP
ZNF367	195828	hgsc.bcm.edu	37	9	99180071	99180071	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF367-90	NM_153695	exon1	c.C244T	p.L82F	GGCTGAGCGTCAC	.	32.0	11.0	9.0	0.0	.	Atlas-SNP
SLC44A1	23446	hgsc.bcm.edu	37	9	108126992	108126992	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLC44A1-94	NM_080546	exon10	c.A1244G	p.Y415C	CATACTATTTTAC	.	163.0	66.0	130.0	0.0	.	Atlas-SNP
FAM206A	54942	hgsc.bcm.edu	37	9	111696815	111696815	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_017832	exon1	c.G49A	p.D17N	CTCGTGGATCGAT	.	463.0	190.0	210.0	0.0	.	Atlas-SNP
SVEP1	79987	hgsc.bcm.edu	37	9	113192665	113192665	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SVEP1-75	NM_153366	exon33	c.G5419C	p.V1807L	CACCTACTGTATA	.	134.0	62.0	122.0	0.0	.	Atlas-SNP
KIAA0368	23392	hgsc.bcm.edu	37	9	114148674	114148674	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KIAA0368-68	NM_001080398	exon33	c.G4044A	p.W1348X	AACTCGCCACATA	.	114.0	45.0	107.0	0.0	.	Atlas-SNP
RGS3	5998	hgsc.bcm.edu	37	9	116269609	116269609	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RGS3-227	NM_144488	exon14	c.C1128T	p.V376V	CATGGTCCCCCAG	.	195.0	80.0	130.0	0.0	.	Atlas-SNP
ASTN2	23245	hgsc.bcm.edu	37	9	119488071	119488071	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ASTN2-161	NM_014010	exon15	c.C2632T	p.L878L	GCCACAGCTGCTG	.	122.0	53.0	120.0	0.0	.	Atlas-SNP
GSN	2934	hgsc.bcm.edu	37	9	124064309	124064309	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GSN-154	NM_001127664	exon4	c.G60A	p.W20X	GATCTGGCGTGTG	.	300.0	137.0	227.0	0.0	.	Atlas-SNP
OR1B1	347169	hgsc.bcm.edu	37	9	125391061	125391061	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	OR1B1-68	NM_001004450	exon1	c.A754T	p.T252S	CCATGGTGAGGTG	.	136.0	54.0	139.0	0.0	.	Atlas-SNP
ZBTB6	10773	hgsc.bcm.edu	37	9	125673275	125673275	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZBTB6-90	NM_006626	exon2	c.C1077T	p.C359C	CTTCAAGCACACA	.	246.0	120.0	160.0	0.0	.	Atlas-SNP
ZBTB34	403341	hgsc.bcm.edu	37	9	129642194	129642194	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZBTB34-69	NM_001099270	exon2	c.C504T	p.C168C	ATATTGCTCTCAG	.	116.0	57.0	92.0	0.0	.	Atlas-SNP
SPTAN1	6709	hgsc.bcm.edu	37	9	131346591	131346591	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SPTAN1-158	NM_001195532	exon17	c.C2224T	p.R742C	CAGGCCCGCCAGT	.	87.0	27.0	75.0	0.0	.	Atlas-SNP
PRDM12	59335	hgsc.bcm.edu	37	9	133556768	133556768	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PRDM12-90	NM_021619	exon5	c.G816A	p.V272V	CTTCGTGTGCCGC	.	150.0	30.0	72.0	0.0	.	Atlas-SNP
PRRC2B	84726	hgsc.bcm.edu	37	9	134366821	134366821	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PRRC2B-24	NM_013318	exon28	c.C6235T	p.P2079S	ACCATGCCACTGC	.	198.0	84.0	134.0	0.0	.	Atlas-SNP
GBGT1	26301	hgsc.bcm.edu	37	9	136037733	136037733	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GBGT1-90	NM_021996	exon2	c.C67A	p.L23M	ACCACAGGACACT	.	121.0	51.0	81.0	0.0	.	Atlas-SNP
DBH	1621	hgsc.bcm.edu	37	9	136501745	136501745	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DBH-516	NM_000787	exon1	c.C252T	p.G84G	GGCTGGCGTCCTG	.	69.0	26.0	51.0	0.0	.	Atlas-SNP
SSNA1	8636	hgsc.bcm.edu	37	9	140084326	140084326	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SSNA1-153	NM_003731	exon3	c.C320T	p.T107I	AGGCTACAGCCCC	.	113.0	47.0	100.0	0.0	.	Atlas-SNP
C9orf131	138724	hgsc.bcm.edu	37	9	35043650	35043650	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	C9orf131-90	NM_001040411	exon2	c.804delA	p.P268fs	.	.	85.0	32.0	51.0	0.0	.	Atlas-Indel
PKN3	29941	hgsc.bcm.edu	37	9	131480648	131480650	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	AGA	AGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PKN3-521	NM_013355	exon17	c.2029_2031del	p.677_677del	.	.	107.0	30.0	82.0	0.0	.	Atlas-Indel
TPRN	286262	hgsc.bcm.edu	37	9	140087024	140087025	+	In_Frame_Ins	INS	-	-	TCC	rs77086130		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TPRN-90	NM_001128228	exon2	c.1845_1846insGGA	p.E615delinsEE	.	.	94.0	21.0	82.0	0.0	.	Atlas-Indel
FRMPD4	9758	hgsc.bcm.edu	37	X	12728521	12728521	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FRMPD4-263	NM_014728	exon14	c.A1474G	p.I492V	TAGCCTATCACGC	.	53.0	46.0	31.0	0.0	.	Atlas-SNP
ITM2A	9452	hgsc.bcm.edu	37	X	78616967	78616967	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ITM2A-131	NM_004867	exon5	c.T562A	p.Y188N	GCAGATATCTGCC	.	163.0	137.0	173.0	1.0	.	Atlas-SNP
ZNF711	7552	hgsc.bcm.edu	37	X	84519342	84519342	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF711-134	NM_021998	exon5	c.T684C	p.D228D	CAGTGATGGTTCA	.	143.0	125.0	120.0	0.0	.	Atlas-SNP
CPXCR1	53336	hgsc.bcm.edu	37	X	88008936	88008936	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CPXCR1-133	NM_001184771	exon3	c.A521G	p.K174R	GGGTAAAGCGAAA	.	93.0	78.0	65.0	0.0	.	Atlas-SNP
NRK	203447	hgsc.bcm.edu	37	X	105132368	105132368	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NRK-630	NM_198465	exon5	c.G334A	p.A112T	TATGGAGCATTTT	.	235.0	16.0	150.0	0.0	.	Atlas-SNP
PAK3	5063	hgsc.bcm.edu	37	X	110406821	110406821	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PAK3-1043	NM_001128166	exon8	c.C632A	p.A211D	CCATTGCTTCACC	.	85.0	75.0	102.0	0.0	.	Atlas-SNP
THOC2	57187	hgsc.bcm.edu	37	X	122820490	122820490	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	THOC2-133	NM_001081550	exon8	c.G676A	p.D226N	AGAAGTCATCGTG	.	120.0	105.0	124.0	0.0	.	Atlas-SNP
STAG2	10735	hgsc.bcm.edu	37	X	123215366	123215366	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	STAG2-134	NM_001042750	exon28	c.C2912T	p.A971V	CCATTGCCATGCT	.	70.0	63.0	59.0	0.0	.	Atlas-SNP
IGSF1	3547	hgsc.bcm.edu	37	X	130416500	130416500	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	IGSF1-133	NM_001170962	exon6	c.C1137T	p.G379G	ATAGATGCCAGTA	.	196.0	174.0	148.0	1.0	.	Atlas-SNP
MTMR1	8776	hgsc.bcm.edu	37	X	149931073	149931073	+	Silent	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MTMR1-131	NM_003828	exon15	c.C1869A	p.A623A	GCTGGCCGTCAGG	.	255.0	223.0	178.0	1.0	.	Atlas-SNP
ZFP92	139735	hgsc.bcm.edu	37	X	152685761	152685761	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZFP92-62	NM_001136273	exon3	c.G236T	p.R79I	TCCCCAGAACCTG	.	205.0	80.0	60.0	0.0	.	Atlas-SNP
ABCD1	215	hgsc.bcm.edu	37	X	152994692	152994692	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ABCD1-130	NM_000033	exon2	c.G906A	p.E302E	GGTGGAGCTGGCC	.	80.0	4.0	62.0	0.0	.	Atlas-SNP
FLNA	2316	hgsc.bcm.edu	37	X	153577327	153577327	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FLNA-599	NM_001456	exon47	c.C7810T	p.R2604W	AGAGCCGGCTGCC	.	192.0	172.0	144.0	0.0	.	Atlas-SNP
PLXNA3	55558	hgsc.bcm.edu	37	X	153689660	153689660	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PLXNA3-132	NM_017514	exon3	c.C816T	p.F272F	AGAGTTCTACTCA	.	106.0	87.0	69.0	0.0	.	Atlas-SNP
FAM3A	60343	hgsc.bcm.edu	37	X	153740192	153740192	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FAM3A-130	NM_001171134	exon3	c.C140T	p.S47L	GTCACCGAGCTCT	.	34.0	29.0	21.0	0.0	.	Atlas-SNP
ZBTB33	10009	hgsc.bcm.edu	37	X	119387857	119387857	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZBTB33-132	NM_006777	exon2	c.586delA	p.I196fs	.	.	61.0	54.0	46.0	0.0	.	Atlas-Indel
GPR112	139378	hgsc.bcm.edu	37	X	135430724	135430725	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GPR112-183	NM_153834	exon6	c.4859_4860insA	p.S1620fs	.	.	58.0	26.0	52.0	0.0	.	Pindel
