Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ABCA4	24	broad.mit.edu	37	1	94476317	94476317	+	Intron	SNP	C	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA4	24	broad.mit.edu	37	1	94476317	94476317	+	Intron	SNP	C	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC2	1244	broad.mit.edu	37	10	101571362	101571362	+	Intron	SNP	G	C	C			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC2	1244	broad.mit.edu	37	10	101571362	101571362	+	Intron	SNP	G	C	C			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCG4	64137	broad.mit.edu	37	11	119024780	119024780	+	Silent	SNP	C	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCG4	64137	broad.mit.edu	37	11	119024780	119024780	+	Silent	SNP	C	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACOT11	26027	broad.mit.edu	37	1	55060292	55060292	+	Missense_Mutation	SNP	G	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACPP	55	broad.mit.edu	37	3	132075715	132075715	+	Missense_Mutation	SNP	C	T	T			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACPP	55	broad.mit.edu	37	3	132075715	132075715	+	Missense_Mutation	SNP	C	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSM2B	348158	broad.mit.edu	37	16	20548519	20548519	+	3'UTR	SNP	G	T	T			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSM2B	348158	broad.mit.edu	37	16	20548519	20548519	+	3'UTR	SNP	G	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTN2	88	broad.mit.edu	37	1	236849947	236849947	+	5'UTR	SNP	C	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTN2	88	broad.mit.edu	37	1	236849947	236849947	+	5'UTR	SNP	C	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106208852	106208853	+	Intron	INS	-	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS13	11093	broad.mit.edu	37	9	136290667	136290667	+	Missense_Mutation	SNP	G	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS13	11093	broad.mit.edu	37	9	136291428	136291428	+	Missense_Mutation	SNP	G	C	C			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS13	11093	broad.mit.edu	37	9	136291428	136291428	+	Missense_Mutation	SNP	G	C	C			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS20	80070	broad.mit.edu	37	12	43777759	43777759	+	Missense_Mutation	SNP	C	T	T			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS20	80070	broad.mit.edu	37	12	43777759	43777759	+	Missense_Mutation	SNP	C	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS4	9507	broad.mit.edu	37	1	161166644	161166644	+	Silent	SNP	C	T	T			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS4	9507	broad.mit.edu	37	1	161166644	161166644	+	Silent	SNP	C	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADPRHL1	113622	broad.mit.edu	37	13	114107634	114107634	+	Missense_Mutation	SNP	G	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADPRHL1	113622	broad.mit.edu	37	13	114107634	114107634	+	Missense_Mutation	SNP	G	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFAP1L1	134265	broad.mit.edu	37	5	148695881	148695881	+	Intron	SNP	C	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFAP1L1	134265	broad.mit.edu	37	5	148695881	148695881	+	Intron	SNP	C	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGAP3	116988	broad.mit.edu	37	7	150838972	150838973	+	Intron	INS	-	C	C			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AIM1L	55057	broad.mit.edu	37	1	26672884	26672884	+	5'Flank	SNP	T	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AIM1L	55057	broad.mit.edu	37	1	26672884	26672884	+	5'Flank	SNP	T	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP11	11215	broad.mit.edu	37	13	42876365	42876365	+	Missense_Mutation	SNP	G	T	T			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP11	11215	broad.mit.edu	37	13	42876365	42876365	+	Missense_Mutation	SNP	G	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH3A1	218	broad.mit.edu	37	17	19642457	19642457	+	Intron	SNP	C	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALKBH1	8846	broad.mit.edu	37	14	78140367	78140367	+	Nonsense_Mutation	SNP	C	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALMS1	7840	broad.mit.edu	37	2	73828596	73828596	+	Intron	SNP	G	T	T	rs28730864	by1000genomes	TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK3	288	broad.mit.edu	37	10	61844435	61844435	+	Missense_Mutation	SNP	C	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKFN1	162282	broad.mit.edu	37	17	54230779	54230779	+	5'Flank	SNP	C	T	T			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKFN1	162282	broad.mit.edu	37	17	54230779	54230779	+	5'Flank	SNP	C	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKHD1-EIF4EBP3	404734	broad.mit.edu	37	5	139914884	139914884	+	Intron	SNP	C	G	G			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKHD1-EIF4EBP3	404734	broad.mit.edu	37	5	139914884	139914884	+	Intron	SNP	C	G	G			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD20A3	441425	broad.mit.edu	37	9	67965185	67965186	+	Intron	INS	-	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD30A	91074	broad.mit.edu	37	10	37430689	37430689	+	Silent	SNP	G	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD30B	374860	broad.mit.edu	37	18	14803804	14803804	+	Silent	SNP	C	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO7	50636	broad.mit.edu	37	2	242141661	242141661	+	Missense_Mutation	SNP	T	C	C			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO7	50636	broad.mit.edu	37	2	242151392	242151392	+	Intron	SNP	C	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO7	50636	broad.mit.edu	37	2	242141661	242141661	+	Missense_Mutation	SNP	T	C	C			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOL4	80832	broad.mit.edu	37	22	36598259	36598259	+	Intron	SNP	C	G	G			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARID2	196528	broad.mit.edu	37	12	46244361	46244361	+	Nonsense_Mutation	SNP	C	T	T			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARID2	196528	broad.mit.edu	37	12	46244361	46244361	+	Nonsense_Mutation	SNP	C	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARID5B	84159	broad.mit.edu	37	10	63845255	63845255	+	Intron	SNP	G	C	C			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASIP	434	broad.mit.edu	37	20	32850663	32850663	+	Silent	SNP	C	T	T	rs149537165		TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATL3	25923	broad.mit.edu	37	11	63400117	63400117	+	Intron	SNP	T	C	C			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP8A2	51761	broad.mit.edu	37	13	26129181	26129181	+	Nonsense_Mutation	SNP	C	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP8A2	51761	broad.mit.edu	37	13	26129181	26129181	+	Nonsense_Mutation	SNP	C	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAZ1A	11177	broad.mit.edu	37	14	35255506	35255506	+	Intron	SNP	A	T	T			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAZ2B	29994	broad.mit.edu	37	2	160284797	160284797	+	Intron	SNP	A	G	G			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAZ2B	29994	broad.mit.edu	37	2	160284797	160284797	+	Intron	SNP	A	G	G			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BNC1	646	broad.mit.edu	37	15	83932641	83932641	+	Silent	SNP	G	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BNC1	646	broad.mit.edu	37	15	83932641	83932641	+	Silent	SNP	G	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRD8	10902	broad.mit.edu	37	5	137505061	137505061	+	Intron	SNP	G	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRD8	10902	broad.mit.edu	37	5	137505061	137505061	+	Intron	SNP	G	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf72	196740	broad.mit.edu	37	10	50315576	50315576	+	Intron	SNP	G	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf72	196740	broad.mit.edu	37	10	50315576	50315576	+	Intron	SNP	G	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf76	79591	broad.mit.edu	37	10	103783195	103783195	+	Intron	SNP	A	T	T			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf76	79591	broad.mit.edu	37	10	103783195	103783195	+	Intron	SNP	A	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf61	79684	broad.mit.edu	37	11	124661304	124661304	+	Intron	SNP	C	T	T			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf61	79684	broad.mit.edu	37	11	124661304	124661304	+	Intron	SNP	C	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf135	64430	broad.mit.edu	37	14	60575068	60575068	+	Intron	SNP	G	C	C			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf135	64430	broad.mit.edu	37	14	60575068	60575068	+	Intron	SNP	G	C	C			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf70	80233	broad.mit.edu	37	17	79517503	79517503	+	Silent	SNP	C	T	T			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf70	80233	broad.mit.edu	37	17	79517286	79517286	+	Missense_Mutation	SNP	T	C	C	rs151231414	byFrequency	TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf97	400566	broad.mit.edu	37	17	263636	263636	+	Silent	SNP	C	T	T			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf116	79098	broad.mit.edu	37	1	207200842	207200842	+	Silent	SNP	T	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf116	79098	broad.mit.edu	37	1	207200842	207200842	+	Silent	SNP	T	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf45	152940	broad.mit.edu	37	4	159894386	159894386	+	Missense_Mutation	SNP	C	G	G			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf45	152940	broad.mit.edu	37	4	159894386	159894386	+	Missense_Mutation	SNP	C	G	G			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8A	731	broad.mit.edu	37	1	57349288	57349288	+	Silent	SNP	G	T	T			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8A	731	broad.mit.edu	37	1	57349288	57349288	+	Silent	SNP	G	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf41	138199	broad.mit.edu	37	9	77598666	77598666	+	3'UTR	SNP	G	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf41	138199	broad.mit.edu	37	9	77598666	77598666	+	3'UTR	SNP	G	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181708376	181708376	+	Missense_Mutation	SNP	G	T	T			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181708376	181708376	+	Missense_Mutation	SNP	G	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALCOCO1	57658	broad.mit.edu	37	12	54109766	54109766	+	Silent	SNP	C	T	T			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALCOCO1	57658	broad.mit.edu	37	12	54109766	54109766	+	Silent	SNP	C	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CARS	833	broad.mit.edu	37	11	3041474	3041474	+	Silent	SNP	C	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CARS	833	broad.mit.edu	37	11	3041474	3041474	+	Silent	SNP	C	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASC5	57082	broad.mit.edu	37	15	40917230	40917231	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASC5	57082	broad.mit.edu	37	15	40917230	40917231	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC146	57639	broad.mit.edu	37	7	76828389	76828389	+	Intron	SNP	G	C	C			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC60	160777	broad.mit.edu	37	12	119926463	119926463	+	Intron	SNP	C	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCKAR	886	broad.mit.edu	37	4	26491830	26491830	+	Silent	SNP	G	A	A	rs115609834	by1000genomes	TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH10	1008	broad.mit.edu	37	5	24488043	24488043	+	Missense_Mutation	SNP	C	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CECR2	27443	broad.mit.edu	37	22	17983959	17983959	+	Missense_Mutation	SNP	C	T	T			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CECR2	27443	broad.mit.edu	37	22	17983959	17983959	+	Missense_Mutation	SNP	C	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHGA	1113	broad.mit.edu	37	14	93398250	93398250	+	Intron	DEL	G	-	-	rs62793360	by1000genomes	TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHGB	1114	broad.mit.edu	37	20	5902942	5902942	+	Intron	SNP	C	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHGB	1114	broad.mit.edu	37	20	5902942	5902942	+	Intron	SNP	C	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHKB	1120	broad.mit.edu	37	22	51018161	51018161	+	Silent	SNP	G	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHKB	1120	broad.mit.edu	37	22	51018161	51018161	+	Silent	SNP	G	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CMTM2	146225	broad.mit.edu	37	16	66613921	66613921	+	Intron	SNP	C	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNDP1	84735	broad.mit.edu	37	18	72234726	72234726	+	Intron	SNP	C	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNDP1	84735	broad.mit.edu	37	18	72234726	72234726	+	Intron	SNP	C	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTLN	54875	broad.mit.edu	37	9	17466001	17466001	+	Missense_Mutation	SNP	G	T	T			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTLN	54875	broad.mit.edu	37	9	17466001	17466001	+	Missense_Mutation	SNP	G	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP3	79937	broad.mit.edu	37	9	39085591	39085591	+	Intron	SNP	C	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL13A1	1305	broad.mit.edu	37	10	71657311	71657311	+	Intron	SNP	C	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A2	1292	broad.mit.edu	37	21	47544689	47544689	+	Intron	SNP	C	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL9A3	1299	broad.mit.edu	37	20	61460132	61460132	+	Missense_Mutation	SNP	A	T	T			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COPS6	10980	broad.mit.edu	37	7	99687973	99687973	+	Intron	DEL	A	-	-	rs75914464		TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COX4I1	1327	broad.mit.edu	37	16	85838571	85838571	+	Silent	SNP	G	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COX4I1	1327	broad.mit.edu	37	16	85838571	85838571	+	Silent	SNP	G	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPSF3L	54973	broad.mit.edu	37	1	1254544	1254544	+	Intron	SNP	G	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPXM2	119587	broad.mit.edu	37	10	125673595	125673595	+	Intron	SNP	G	C	C			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CR1L	1379	broad.mit.edu	37	1	207842739	207842756	+	Intron	DEL	ATTTCAGTTTTCTTCGAG	-	-	rs139825875		TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSF1	1435	broad.mit.edu	37	1	110465719	110465719	+	Intron	SNP	C	T	T			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSF1	1435	broad.mit.edu	37	1	110465719	110465719	+	Intron	SNP	C	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTSO	1519	broad.mit.edu	37	4	156850896	156850896	+	Intron	SNP	T	C	C			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTSO	1519	broad.mit.edu	37	4	156850896	156850896	+	Intron	SNP	T	C	C			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTTNBP2NL	55917	broad.mit.edu	37	1	112958722	112958722	+	Intron	SNP	A	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUL9	23113	broad.mit.edu	37	6	43167164	43167164	+	Intron	SNP	C	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP17A1	1586	broad.mit.edu	37	10	104594740	104594740	+	Missense_Mutation	SNP	C	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP17A1	1586	broad.mit.edu	37	10	104594740	104594740	+	Missense_Mutation	SNP	C	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCI	1632	broad.mit.edu	37	16	2293439	2293439	+	Missense_Mutation	SNP	C	T	T			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCI	1632	broad.mit.edu	37	16	2293439	2293439	+	Missense_Mutation	SNP	C	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCT	1638	broad.mit.edu	37	13	95114416	95114416	+	Silent	SNP	G	T	T			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCT	1638	broad.mit.edu	37	13	95114416	95114416	+	Silent	SNP	G	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCUN1D1	54165	broad.mit.edu	37	3	182674140	182674140	+	Intron	SNP	C	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCUN1D1	54165	broad.mit.edu	37	3	182674140	182674140	+	Intron	SNP	C	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEFB116	245930	broad.mit.edu	37	20	29891023	29891023	+	Missense_Mutation	SNP	G	T	T			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEFB116	245930	broad.mit.edu	37	20	29891023	29891023	+	Missense_Mutation	SNP	G	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEPDC5	9681	broad.mit.edu	37	22	32174217	32174217	+	Intron	SNP	A	G	G			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLD	1738	broad.mit.edu	37	7	107558381	107558381	+	Missense_Mutation	SNP	A	G	G			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLD	1738	broad.mit.edu	37	7	107558381	107558381	+	Missense_Mutation	SNP	A	G	G			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNMT3A	1788	broad.mit.edu	37	2	25459873	25459873	+	Missense_Mutation	SNP	G	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNMT3A	1788	broad.mit.edu	37	2	25459873	25459873	+	Missense_Mutation	SNP	G	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK10	55619	broad.mit.edu	37	2	225672559	225672559	+	Intron	SNP	T	G	G			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK10	55619	broad.mit.edu	37	2	225672559	225672559	+	Intron	SNP	T	G	G			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPF3	8110	broad.mit.edu	37	14	73138273	73138273	+	Intron	SNP	A	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP10	57628	broad.mit.edu	37	2	116497337	116497337	+	Missense_Mutation	SNP	C	G	G			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP10	57628	broad.mit.edu	37	2	116497337	116497337	+	Missense_Mutation	SNP	C	G	G			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSCAML1	57453	broad.mit.edu	37	11	117306294	117306295	+	Intron	INS	-	G	G	rs146782057	by1000genomes	TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DST	667	broad.mit.edu	37	6	56492022	56492022	+	Nonsense_Mutation	SNP	G	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYDC2	84332	broad.mit.edu	37	10	82126540	82126540	+	Missense_Mutation	SNP	C	G	G			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYDC2	84332	broad.mit.edu	37	10	82126540	82126540	+	Missense_Mutation	SNP	C	G	G			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNLT1	6993	broad.mit.edu	37	6	159065728	159065728	+	Missense_Mutation	SNP	G	C	C	rs151068285		TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNLT1	6993	broad.mit.edu	37	6	159065728	159065728	+	Missense_Mutation	SNP	G	C	C	rs151068285		TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EEF1A2	1917	broad.mit.edu	37	20	62121879	62121879	+	Missense_Mutation	SNP	C	T	T			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF2AK1	27102	broad.mit.edu	37	7	6088509	6088509	+	Intron	SNP	T	C	C			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELAC1	55520	broad.mit.edu	37	18	48513152	48513152	+	Frame_Shift_Del	DEL	A	-	-			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELAC1	55520	broad.mit.edu	37	18	48513152	48513152	+	Frame_Shift_Del	DEL	A	-	-			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELAVL1	1994	broad.mit.edu	37	19	8045931	8045931	+	Intron	SNP	G	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELAVL1	1994	broad.mit.edu	37	19	8045931	8045931	+	Intron	SNP	G	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENGASE	64772	broad.mit.edu	37	17	77079786	77079786	+	Intron	SNP	G	A	A	rs112315317		TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENTPD3	956	broad.mit.edu	37	3	40433722	40433722	+	Intron	SNP	G	C	C			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENTPD3	956	broad.mit.edu	37	3	40433722	40433722	+	Intron	SNP	G	C	C			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EP400	57634	broad.mit.edu	37	12	132547087	132547087	+	Silent	SNP	G	A	A	rs12366766		TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPRS	2058	broad.mit.edu	37	1	220154634	220154634	+	Intron	SNP	T	C	C			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERC2	26059	broad.mit.edu	37	3	56114807	56114807	+	Intron	SNP	A	G	G			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERC2	26059	broad.mit.edu	37	3	56114807	56114807	+	Intron	SNP	A	G	G			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM185A	222234	broad.mit.edu	37	7	102448666	102448666	+	Intron	SNP	G	C	C			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM188A	80013	broad.mit.edu	37	10	15902236	15902236	+	Silent	SNP	G	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM3D	131177	broad.mit.edu	37	3	58629326	58629326	+	Intron	SNP	C	G	G			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM3D	131177	broad.mit.edu	37	3	58629326	58629326	+	Intron	SNP	C	G	G			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM71B	153745	broad.mit.edu	37	5	156589711	156589711	+	Missense_Mutation	SNP	G	T	T			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM71B	153745	broad.mit.edu	37	5	156589711	156589711	+	Missense_Mutation	SNP	G	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FARSB	10056	broad.mit.edu	37	2	223489197	223489197	+	Missense_Mutation	SNP	C	G	G			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FARSB	10056	broad.mit.edu	37	2	223489197	223489197	+	Missense_Mutation	SNP	C	G	G			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92088592	92088592	+	Intron	SNP	A	T	T			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92088592	92088592	+	Intron	SNP	A	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FEZ1	9638	broad.mit.edu	37	11	125325678	125325678	+	Intron	SNP	G	T	T	rs144983982	by1000genomes	TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FEZ1	9638	broad.mit.edu	37	11	125325678	125325678	+	Intron	SNP	G	T	T	rs144983982	by1000genomes	TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FKBPL	63943	broad.mit.edu	37	6	32097522	32097522	+	Missense_Mutation	SNP	C	A	A	rs143627051		TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FKBPL	63943	broad.mit.edu	37	6	32097522	32097522	+	Missense_Mutation	SNP	C	A	A	rs143627051		TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLI1	2313	broad.mit.edu	37	11	128679233	128679233	+	Intron	SNP	G	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLT4	2324	broad.mit.edu	37	5	180053098	180053098	+	Intron	SNP	G	T	T			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN2	56776	broad.mit.edu	37	1	240421306	240421306	+	Missense_Mutation	SNP	A	G	G			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN2	56776	broad.mit.edu	37	1	240421306	240421306	+	Missense_Mutation	SNP	A	G	G			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXP4	116113	broad.mit.edu	37	6	41564990	41564990	+	Intron	SNP	C	T	T			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXP4	116113	broad.mit.edu	37	6	41564990	41564990	+	Intron	SNP	C	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRG1	2565	broad.mit.edu	37	4	46060407	46060407	+	Intron	SNP	A	G	G			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRG1	2565	broad.mit.edu	37	4	46060407	46060407	+	Intron	SNP	A	G	G			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLG1	2734	broad.mit.edu	37	16	74501792	74501792	+	Intron	SNP	G	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLI3	2737	broad.mit.edu	37	7	42012056	42012056	+	Missense_Mutation	SNP	C	G	G			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLI3	2737	broad.mit.edu	37	7	42012056	42012056	+	Missense_Mutation	SNP	C	G	G			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GREB1	9687	broad.mit.edu	37	2	11720872	11720872	+	Missense_Mutation	SNP	C	T	T	rs148901217		TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GREB1	9687	broad.mit.edu	37	2	11720872	11720872	+	Missense_Mutation	SNP	C	T	T	rs148901217		TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK5	2901	broad.mit.edu	37	19	42526272	42526272	+	Intron	SNP	C	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN2B	2904	broad.mit.edu	37	12	13768608	13768608	+	Intron	SNP	T	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSK3B	2932	broad.mit.edu	37	3	119748148	119748148	+	Intron	SNP	C	T	T			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSK3B	2932	broad.mit.edu	37	3	119748148	119748148	+	Intron	SNP	C	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSTP1	2950	broad.mit.edu	37	11	67353976	67353977	+	Frame_Shift_Ins	INS	-	CC	CC			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HBG2	3048	broad.mit.edu	37	11	5593057	5593057	+	Intron	SNP	A	T	T			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HBG2	3048	broad.mit.edu	37	11	5593057	5593057	+	Intron	SNP	A	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLX	3142	broad.mit.edu	37	1	221055574	221055574	+	Missense_Mutation	SNP	G	T	T			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLX	3142	broad.mit.edu	37	1	221055574	221055574	+	Missense_Mutation	SNP	G	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMGCS2	3158	broad.mit.edu	37	1	120299834	120299834	+	Intron	SNP	G	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMGCS2	3158	broad.mit.edu	37	1	120299837	120299837	+	Intron	SNP	G	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMGCS2	3158	broad.mit.edu	37	1	120299834	120299834	+	Intron	SNP	G	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMGCS2	3158	broad.mit.edu	37	1	120299837	120299837	+	Intron	SNP	G	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HORMAD2	150280	broad.mit.edu	37	22	30533002	30533002	+	Intron	SNP	C	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSD17B6	8630	broad.mit.edu	37	12	57178691	57178691	+	Missense_Mutation	SNP	C	G	G			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSD17B6	8630	broad.mit.edu	37	12	57178691	57178691	+	Missense_Mutation	SNP	C	G	G			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFT88	8100	broad.mit.edu	37	13	21219139	21219139	+	Intron	SNP	C	T	T			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFT88	8100	broad.mit.edu	37	13	21219139	21219139	+	Intron	SNP	C	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGDCC4	57722	broad.mit.edu	37	15	65687617	65687617	+	Intron	SNP	G	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGDCC4	57722	broad.mit.edu	37	15	65687617	65687617	+	Intron	SNP	G	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGFBP1	3484	broad.mit.edu	37	7	45931489	45931489	+	Intron	SNP	C	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGFBP1	3484	broad.mit.edu	37	7	45931489	45931489	+	Intron	SNP	C	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGFBP5	3488	broad.mit.edu	37	2	217542746	217542746	+	Intron	DEL	A	-	-			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGFBP5	3488	broad.mit.edu	37	2	217542746	217542746	+	Intron	DEL	A	-	-			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1R2	7850	broad.mit.edu	37	2	102641036	102641036	+	Missense_Mutation	SNP	G	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1R2	7850	broad.mit.edu	37	2	102641036	102641036	+	Missense_Mutation	SNP	G	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INTS1	26173	broad.mit.edu	37	7	1516581	1516581	+	Intron	SNP	G	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRF4	3662	broad.mit.edu	37	6	396779	396795	+	Intron	DEL	CTCCTGCACTCCTTTAA	-	-	rs113172745		TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ISL1	3670	broad.mit.edu	37	5	50683505	50683505	+	Missense_Mutation	SNP	G	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ISL1	3670	broad.mit.edu	37	5	50683505	50683505	+	Missense_Mutation	SNP	G	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGB1	3688	broad.mit.edu	37	10	33212662	33212662	+	Missense_Mutation	SNP	T	C	C			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITPR1	3708	broad.mit.edu	37	3	4741678	4741678	+	Intron	SNP	G	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAKMIP2	9832	broad.mit.edu	37	5	147019087	147019087	+	Intron	SNP	G	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JRKL	8690	broad.mit.edu	37	11	96124962	96124962	+	Missense_Mutation	SNP	A	C	C			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KEAP1	9817	broad.mit.edu	37	19	10600510	10600510	+	Nonsense_Mutation	SNP	C	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KEAP1	9817	broad.mit.edu	37	19	10600510	10600510	+	Nonsense_Mutation	SNP	C	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF26A	26153	broad.mit.edu	37	14	104642378	104642378	+	Missense_Mutation	SNP	G	T	T			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF2C	11004	broad.mit.edu	37	1	45212371	45212371	+	Intron	SNP	C	G	G			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRAS	3845	broad.mit.edu	37	12	25398285	25398285	+	Missense_Mutation	SNP	C	A	A	rs121913530		TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRAS	3845	broad.mit.edu	37	12	25398285	25398285	+	Missense_Mutation	SNP	C	A	A	rs121913530		TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KSR1	8844	broad.mit.edu	37	17	25919340	25919341	+	Intron	INS	-	C	C			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KY	339855	broad.mit.edu	37	3	134322838	134322838	+	Silent	SNP	C	T	T			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KY	339855	broad.mit.edu	37	3	134322838	134322838	+	Silent	SNP	C	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIPC	3990	broad.mit.edu	37	15	58860869	58860869	+	Intron	SNP	T	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIPC	3990	broad.mit.edu	37	15	58860869	58860869	+	Intron	SNP	T	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC200030	200030	broad.mit.edu	37	1	148343884	148343884	+	Intron	SNP	C	T	T			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC200030	200030	broad.mit.edu	37	1	148343884	148343884	+	Intron	SNP	C	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC642826	642826	broad.mit.edu	37	10	47207828	47207828	+	RNA	SNP	C	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC647309	647309	broad.mit.edu	37	3	190580374	190580374	+	Intron	SNP	G	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC647946	647946	broad.mit.edu	37	18	36915603	36915603	+	Intron	SNP	C	T	T			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC647946	647946	broad.mit.edu	37	18	36915603	36915603	+	Intron	SNP	C	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC653544	653544	broad.mit.edu	37	10	135491080	135491080	+	Missense_Mutation	SNP	G	C	C			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	22609517	22609517	+	Intron	SNP	C	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRCH4	4034	broad.mit.edu	37	7	100172651	100172651	+	3'UTR	SNP	C	T	T			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP12	29967	broad.mit.edu	37	8	105509951	105509951	+	Missense_Mutation	SNP	C	G	G			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP12	29967	broad.mit.edu	37	8	105509951	105509951	+	Missense_Mutation	SNP	C	G	G			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141055419	141055419	+	Missense_Mutation	SNP	A	T	T			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141946049	141946049	+	Silent	SNP	G	T	T			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141055419	141055419	+	Missense_Mutation	SNP	A	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141946049	141946049	+	Silent	SNP	G	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRN2	10446	broad.mit.edu	37	1	204589053	204589053	+	Missense_Mutation	SNP	A	G	G			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRN2	10446	broad.mit.edu	37	1	204589053	204589053	+	Missense_Mutation	SNP	A	G	G			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LZTS1	11178	broad.mit.edu	37	8	20110503	20110503	+	Silent	SNP	G	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LZTS1	11178	broad.mit.edu	37	8	20110503	20110503	+	Silent	SNP	G	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MALAT1	378938	broad.mit.edu	37	11	65268293	65268296	+	RNA	DEL	TTTA	-	-			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MBD1	4152	broad.mit.edu	37	18	47801967	47801967	+	Intron	SNP	C	G	G			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MBD1	4152	broad.mit.edu	37	18	47801967	47801967	+	Intron	SNP	C	G	G			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCC	4163	broad.mit.edu	37	5	112418748	112418748	+	Intron	SNP	C	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED1	5469	broad.mit.edu	37	17	37564758	37564758	+	Missense_Mutation	SNP	G	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED1	5469	broad.mit.edu	37	17	37564758	37564758	+	Missense_Mutation	SNP	G	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEGF8	1954	broad.mit.edu	37	19	42866807	42866807	+	Intron	SNP	G	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEGF8	1954	broad.mit.edu	37	19	42866807	42866807	+	Intron	SNP	G	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIPEP	4285	broad.mit.edu	37	13	24444289	24444289	+	Missense_Mutation	SNP	T	C	C			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIPEP	4285	broad.mit.edu	37	13	24444289	24444289	+	Missense_Mutation	SNP	T	C	C			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP17	4326	broad.mit.edu	37	12	132326281	132326281	+	Silent	SNP	G	A	A	rs76305475	byFrequency;by1000genomes	TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPL22	29093	broad.mit.edu	37	5	154320812	154320812	+	Missense_Mutation	SNP	A	G	G			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPL22	29093	broad.mit.edu	37	5	154320812	154320812	+	Missense_Mutation	SNP	A	G	G			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC6	4588	broad.mit.edu	37	11	1018143	1018143	+	Missense_Mutation	SNP	C	T	T			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC6	4588	broad.mit.edu	37	11	1018143	1018143	+	Missense_Mutation	SNP	C	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO16	23026	broad.mit.edu	37	13	109777480	109777480	+	Missense_Mutation	SNP	C	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO3B	140469	broad.mit.edu	37	2	171399378	171399378	+	Intron	SNP	C	T	T	rs2355886		TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOF	26509	broad.mit.edu	37	10	95103508	95103508	+	Intron	SNP	T	C	C			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAPSA	9476	broad.mit.edu	37	19	50862305	50862306	+	Frame_Shift_Ins	INS	-	C	C			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF3	84224	broad.mit.edu	37	1	21804991	21804991	+	Intron	SNP	T	G	G	rs141589313	by1000genomes	TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF3	84224	broad.mit.edu	37	1	21804993	21804993	+	Intron	SNP	C	A	A	rs146186302	by1000genomes	TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF3	84224	broad.mit.edu	37	1	21805008	21805008	+	Intron	SNP	C	T	T	rs76906661	by1000genomes	TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCRNA00182	100302692	broad.mit.edu	37	X	73351828	73351828	+	Intron	SNP	G	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDUFA12	55967	broad.mit.edu	37	12	95387915	95387915	+	Intron	SNP	G	C	C			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDUFA12	55967	broad.mit.edu	37	12	95387915	95387915	+	Intron	SNP	G	C	C			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL1	4745	broad.mit.edu	37	11	20949890	20949890	+	Intron	SNP	C	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL1	4745	broad.mit.edu	37	11	20949890	20949890	+	Intron	SNP	C	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL2	4753	broad.mit.edu	37	12	44916014	44916014	+	Intron	SNP	G	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NETO2	81831	broad.mit.edu	37	16	47120100	47120100	+	Intron	SNP	C	G	G			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NETO2	81831	broad.mit.edu	37	16	47120100	47120100	+	Intron	SNP	C	G	G			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEU2	4759	broad.mit.edu	37	2	233897387	233897387	+	Silent	SNP	G	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEU2	4759	broad.mit.edu	37	2	233897387	233897387	+	Silent	SNP	G	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFX1	4799	broad.mit.edu	37	9	33364822	33364822	+	Intron	DEL	A	-	-			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NHEDC2	133308	broad.mit.edu	37	4	103970271	103970271	+	Intron	SNP	C	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NID1	4811	broad.mit.edu	37	1	236154433	236154433	+	Intron	SNP	A	C	C			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP14	338323	broad.mit.edu	37	11	7060186	7060186	+	Intron	SNP	G	T	T	rs114260711	by1000genomes	TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP14	338323	broad.mit.edu	37	11	7064233	7064233	+	Missense_Mutation	SNP	G	C	C			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP14	338323	broad.mit.edu	37	11	7060186	7060186	+	Intron	SNP	G	T	T	rs114260711	by1000genomes	TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP14	338323	broad.mit.edu	37	11	7064233	7064233	+	Missense_Mutation	SNP	G	C	C			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP5	126206	broad.mit.edu	37	19	56539676	56539676	+	Missense_Mutation	SNP	G	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP5	126206	broad.mit.edu	37	19	56539676	56539676	+	Missense_Mutation	SNP	G	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPFFR2	10886	broad.mit.edu	37	4	73013156	73013156	+	Missense_Mutation	SNP	C	T	T			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPFFR2	10886	broad.mit.edu	37	4	73013156	73013156	+	Missense_Mutation	SNP	C	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRG4	145957	broad.mit.edu	37	15	76243442	76243442	+	Intron	SNP	C	G	G			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NSDHL	50814	broad.mit.edu	37	X	152027454	152027454	+	Silent	SNP	G	T	T			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NSDHL	50814	broad.mit.edu	37	X	152027454	152027454	+	Silent	SNP	G	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUDT21	11051	broad.mit.edu	37	16	56468371	56468371	+	Intron	SNP	G	C	C			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUDT21	11051	broad.mit.edu	37	16	56468371	56468371	+	Intron	SNP	G	C	C			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP210L	91181	broad.mit.edu	37	1	154031257	154031257	+	Intron	SNP	A	G	G			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP93	9688	broad.mit.edu	37	16	56875520	56875520	+	Intron	SNP	C	T	T			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP93	9688	broad.mit.edu	37	16	56875520	56875520	+	Intron	SNP	C	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10G9	219870	broad.mit.edu	37	11	123894107	123894107	+	Missense_Mutation	SNP	A	T	T			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10G9	219870	broad.mit.edu	37	11	123894107	123894107	+	Missense_Mutation	SNP	A	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1M1	125963	broad.mit.edu	37	19	9203982	9203982	+	Missense_Mutation	SNP	C	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1M1	125963	broad.mit.edu	37	19	9203982	9203982	+	Missense_Mutation	SNP	C	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T4	127074	broad.mit.edu	37	1	248525231	248525231	+	Missense_Mutation	SNP	C	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T4	127074	broad.mit.edu	37	1	248525231	248525231	+	Missense_Mutation	SNP	C	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2W3	343171	broad.mit.edu	37	1	248059823	248059823	+	Missense_Mutation	SNP	G	T	T			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2W3	343171	broad.mit.edu	37	1	248059823	248059823	+	Missense_Mutation	SNP	G	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52I1	390037	broad.mit.edu	37	11	4615507	4615507	+	Missense_Mutation	SNP	C	T	T			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52I1	390037	broad.mit.edu	37	11	4615507	4615507	+	Missense_Mutation	SNP	C	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52N4	390072	broad.mit.edu	37	11	5776193	5776193	+	Missense_Mutation	SNP	A	T	T			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52N4	390072	broad.mit.edu	37	11	5776193	5776193	+	Missense_Mutation	SNP	A	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5B3	441608	broad.mit.edu	37	11	58170746	58170746	+	Nonsense_Mutation	SNP	A	T	T			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5B3	441608	broad.mit.edu	37	11	58170746	58170746	+	Nonsense_Mutation	SNP	A	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBPL3	26031	broad.mit.edu	37	7	24910473	24910473	+	Intron	SNP	G	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBPL3	26031	broad.mit.edu	37	7	24910473	24910473	+	Intron	SNP	G	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176526072	176526072	+	Missense_Mutation	SNP	G	C	C			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176526072	176526072	+	Missense_Mutation	SNP	G	C	C			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	55662997	55662997	+	Intron	SNP	G	T	T			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	55996691	55996691	+	Nonsense_Mutation	SNP	C	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	55662997	55662997	+	Intron	SNP	G	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	55996691	55996691	+	Nonsense_Mutation	SNP	C	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH9	5101	broad.mit.edu	37	13	67799512	67799512	+	Intron	SNP	T	C	C			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH9	5101	broad.mit.edu	37	13	67799512	67799512	+	Intron	SNP	T	C	C			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGB2	56103	broad.mit.edu	37	5	140741992	140741992	+	Nonsense_Mutation	SNP	G	T	T			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGB2	56103	broad.mit.edu	37	5	140741992	140741992	+	Nonsense_Mutation	SNP	G	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PILRA	29992	broad.mit.edu	37	7	99995003	99995003	+	Intron	DEL	G	-	-			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB4	5332	broad.mit.edu	37	20	9343700	9343700	+	Intron	SNP	G	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCG2	5336	broad.mit.edu	37	16	81970063	81970063	+	Intron	SNP	G	T	T			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCG2	5336	broad.mit.edu	37	16	81970063	81970063	+	Intron	SNP	G	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHH2	130271	broad.mit.edu	37	2	43907900	43907900	+	Intron	SNP	G	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLIN4	729359	broad.mit.edu	37	19	4512261	4512261	+	Missense_Mutation	SNP	C	G	G			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLIN4	729359	broad.mit.edu	37	19	4512261	4512261	+	Missense_Mutation	SNP	C	G	G			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLOD2	5352	broad.mit.edu	37	3	145789249	145789249	+	Intron	SNP	C	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLOD2	5352	broad.mit.edu	37	3	145789249	145789249	+	Intron	SNP	C	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLTP	5360	broad.mit.edu	37	20	44536520	44536520	+	Missense_Mutation	SNP	G	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLN	353497	broad.mit.edu	37	4	2129810	2129810	+	Intron	SNP	C	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLN	353497	broad.mit.edu	37	4	2129810	2129810	+	Intron	SNP	C	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEG	404785	broad.mit.edu	37	14	19571469	19571469	+	Intron	SNP	T	C	C			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPT2	9374	broad.mit.edu	37	6	32123361	32123362	+	Intron	INS	-	TG	TG	rs140466503	by1000genomes	TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKDC	5591	broad.mit.edu	37	8	48845564	48845564	+	Intron	SNP	G	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRL	5617	broad.mit.edu	37	6	22290617	22290617	+	Intron	SNP	G	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PROKR2	128674	broad.mit.edu	37	20	5283318	5283318	+	Missense_Mutation	SNP	C	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PROKR2	128674	broad.mit.edu	37	20	5283318	5283318	+	Missense_Mutation	SNP	C	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRUNE2	158471	broad.mit.edu	37	9	79438656	79438657	+	Intron	INS	-	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG3	5671	broad.mit.edu	37	19	43236960	43236960	+	Missense_Mutation	SNP	C	T	T			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG3	5671	broad.mit.edu	37	19	43236960	43236960	+	Missense_Mutation	SNP	C	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMB7	5695	broad.mit.edu	37	9	127167774	127167774	+	Intron	SNP	C	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMB7	5695	broad.mit.edu	37	9	127167774	127167774	+	Intron	SNP	C	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTCH1	5727	broad.mit.edu	37	9	98218671	98218671	+	Missense_Mutation	SNP	C	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTCH1	5727	broad.mit.edu	37	9	98218671	98218671	+	Missense_Mutation	SNP	C	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTGS2	5743	broad.mit.edu	37	1	186643668	186643668	+	Silent	SNP	G	A	A	rs139087930		TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTGS2	5743	broad.mit.edu	37	1	186643668	186643668	+	Silent	SNP	G	A	A	rs139087930		TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN14	5784	broad.mit.edu	37	1	214538102	214538102	+	Intron	SNP	G	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN14	5784	broad.mit.edu	37	1	214538102	214538102	+	Intron	SNP	G	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB31	11031	broad.mit.edu	37	18	9814045	9814045	+	Missense_Mutation	SNP	G	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB31	11031	broad.mit.edu	37	18	9814045	9814045	+	Missense_Mutation	SNP	G	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB9BP1	9366	broad.mit.edu	37	5	104435599	104435599	+	RNA	SNP	G	T	T			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB9BP1	9366	broad.mit.edu	37	5	104435599	104435599	+	RNA	SNP	G	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD54L	8438	broad.mit.edu	37	1	46725544	46725544	+	Intron	DEL	G	-	-			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD54L	8438	broad.mit.edu	37	1	46725544	46725544	+	Intron	DEL	G	-	-			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASGEF1C	255426	broad.mit.edu	37	5	179538348	179538348	+	Intron	SNP	G	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASGEF1C	255426	broad.mit.edu	37	5	179538348	179538348	+	Intron	SNP	G	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBAK	57786	broad.mit.edu	37	7	5105125	5105125	+	Nonsense_Mutation	SNP	G	T	T			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBAK	57786	broad.mit.edu	37	7	5105125	5105125	+	Nonsense_Mutation	SNP	G	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBL1	5933	broad.mit.edu	37	20	35660953	35660953	+	Intron	SNP	G	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM10	8241	broad.mit.edu	37	X	47034469	47034470	+	Frame_Shift_Ins	INS	-	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM10	8241	broad.mit.edu	37	X	47034469	47034470	+	Frame_Shift_Ins	INS	-	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG1B	5968	broad.mit.edu	37	2	79314691	79314691	+	Missense_Mutation	SNP	G	C	C			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG1B	5968	broad.mit.edu	37	2	79314691	79314691	+	Missense_Mutation	SNP	G	C	C			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHOD	29984	broad.mit.edu	37	11	66833522	66833522	+	Intron	SNP	C	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF111	54778	broad.mit.edu	37	15	59341653	59341653	+	Intron	SNP	C	G	G			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPE65	6121	broad.mit.edu	37	1	68895402	68895402	+	3'UTR	SNP	G	T	T			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPE65	6121	broad.mit.edu	37	1	68895402	68895402	+	3'UTR	SNP	G	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPSAP52	204010	broad.mit.edu	37	12	66152248	66152248	+	Missense_Mutation	SNP	C	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSBN1	54665	broad.mit.edu	37	1	114309099	114309099	+	Intron	SNP	G	C	C			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSBN1	54665	broad.mit.edu	37	1	114309099	114309099	+	Intron	SNP	G	C	C			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUFY1	80230	broad.mit.edu	37	5	179012850	179012850	+	Missense_Mutation	SNP	C	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237608579	237608579	+	Intron	SNP	C	G	G			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237608579	237608579	+	Intron	SNP	C	G	G			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SALL1	6299	broad.mit.edu	37	16	51173710	51173710	+	Missense_Mutation	SNP	G	T	T			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SALL1	6299	broad.mit.edu	37	16	51173710	51173710	+	Missense_Mutation	SNP	G	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCIN	85477	broad.mit.edu	37	7	12668762	12668762	+	Missense_Mutation	SNP	G	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCIN	85477	broad.mit.edu	37	7	12668762	12668762	+	Missense_Mutation	SNP	G	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN10A	6336	broad.mit.edu	37	3	38753577	38753577	+	Intron	SNP	C	T	T			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN10A	6336	broad.mit.edu	37	3	38753577	38753577	+	Intron	SNP	C	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDAD1	55153	broad.mit.edu	37	4	76898821	76898821	+	Missense_Mutation	SNP	C	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDAD1	55153	broad.mit.edu	37	4	76898821	76898821	+	Missense_Mutation	SNP	C	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC16B	89866	broad.mit.edu	37	1	177929556	177929556	+	Intron	SNP	G	C	C			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SELP	6403	broad.mit.edu	37	1	169580746	169580746	+	Silent	SNP	G	T	T			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SELP	6403	broad.mit.edu	37	1	169580746	169580746	+	Silent	SNP	G	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH2D2A	9047	broad.mit.edu	37	1	156779054	156779054	+	Missense_Mutation	SNP	C	T	T	rs147765972		TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH2D2A	9047	broad.mit.edu	37	1	156779054	156779054	+	Missense_Mutation	SNP	C	T	T	rs147765972		TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHKBP1	92799	broad.mit.edu	37	19	41083375	41083376	+	Intron	INS	-	G	G			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A7	10723	broad.mit.edu	37	5	1065276	1065277	+	Intron	INS	-	AGGGGACAGTG	AGGGGACAGTG	rs150605410	by1000genomes	TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC14A2	8170	broad.mit.edu	37	18	43247996	43247996	+	Intron	SNP	C	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC14A2	8170	broad.mit.edu	37	18	43247996	43247996	+	Intron	SNP	C	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC32A1	140679	broad.mit.edu	37	20	37356981	37356981	+	Missense_Mutation	SNP	G	T	T			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A2	6522	broad.mit.edu	37	7	150770998	150770998	+	Intron	SNP	A	T	T			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A15	55117	broad.mit.edu	37	12	85279637	85279637	+	Intron	SNP	A	G	G			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A15	55117	broad.mit.edu	37	12	85279637	85279637	+	Intron	SNP	A	G	G			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLFN12	55106	broad.mit.edu	37	17	33749265	33749265	+	Missense_Mutation	SNP	T	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLFN12	55106	broad.mit.edu	37	17	33749265	33749265	+	Missense_Mutation	SNP	T	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMCHD1	23347	broad.mit.edu	37	18	2775710	2775710	+	Intron	SNP	A	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMG1	23049	broad.mit.edu	37	16	18878184	18878184	+	Intron	SNP	C	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPG11	80208	broad.mit.edu	37	15	44865727	44865727	+	Intron	SNP	C	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPG11	80208	broad.mit.edu	37	15	44865727	44865727	+	Intron	SNP	C	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPPL2A	84888	broad.mit.edu	37	15	51032016	51032016	+	Silent	SNP	C	T	T			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPPL2A	84888	broad.mit.edu	37	15	51032016	51032016	+	Silent	SNP	C	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158590009	158590009	+	Missense_Mutation	SNP	G	T	T			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158590009	158590009	+	Missense_Mutation	SNP	G	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRD5A3	79644	broad.mit.edu	37	4	56236046	56236046	+	Missense_Mutation	SNP	G	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRD5A3	79644	broad.mit.edu	37	4	56236046	56236046	+	Missense_Mutation	SNP	G	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAT1	6772	broad.mit.edu	37	2	191839672	191839672	+	Intron	SNP	A	C	C			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK11	6794	broad.mit.edu	37	19	1220717	1220717	+	Splice_Site	SNP	G	T	T			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUGT1P1	441394	broad.mit.edu	37	9	33240182	33240182	+	Intron	SNP	C	T	T			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUGT1P1	441394	broad.mit.edu	37	9	33240182	33240182	+	Intron	SNP	C	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULT1C3	442038	broad.mit.edu	37	2	108881397	108881397	+	Missense_Mutation	SNP	G	T	T			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULT1C3	442038	broad.mit.edu	37	2	108881397	108881397	+	Missense_Mutation	SNP	G	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUN2	25777	broad.mit.edu	37	22	39145916	39145916	+	Intron	SNP	G	T	T			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAOK2	9344	broad.mit.edu	37	16	29997963	29997963	+	Silent	SNP	C	T	T			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAOK2	9344	broad.mit.edu	37	16	29997963	29997963	+	Silent	SNP	C	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAS1R2	80834	broad.mit.edu	37	1	19168478	19168479	+	Intron	INS	-	A	A	rs35542368		TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D1	23216	broad.mit.edu	37	4	38051323	38051323	+	Missense_Mutation	SNP	G	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D1	23216	broad.mit.edu	37	4	38051323	38051323	+	Missense_Mutation	SNP	G	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D29	26083	broad.mit.edu	37	17	28885432	28885432	+	5'Flank	SNP	C	G	G			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX10	347853	broad.mit.edu	37	11	67406885	67406885	+	Intron	SNP	T	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDGF3	6998	broad.mit.edu	37	X	109764617	109764617	+	RNA	SNP	G	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDGF3	6998	broad.mit.edu	37	X	109764617	109764617	+	RNA	SNP	G	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDRKH	11022	broad.mit.edu	37	1	151742560	151742588	+	3'UTR	DEL	GGAGAGGGAGACCATGGGGAGACGGAGAC	-	-	rs140076465	by1000genomes	TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFAP2A	7020	broad.mit.edu	37	6	10398887	10398887	+	Silent	SNP	C	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFDP3	51270	broad.mit.edu	37	X	132352188	132352188	+	Missense_Mutation	SNP	C	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7B	80731	broad.mit.edu	37	2	137748465	137748465	+	Missense_Mutation	SNP	C	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLN2	83660	broad.mit.edu	37	15	63044512	63044512	+	Frame_Shift_Del	DEL	T	-	-			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLN2	83660	broad.mit.edu	37	15	63044512	63044512	+	Frame_Shift_Del	DEL	T	-	-			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM72	643236	broad.mit.edu	37	10	45429161	45429161	+	Missense_Mutation	SNP	T	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM72	643236	broad.mit.edu	37	10	45429161	45429161	+	Missense_Mutation	SNP	T	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM87A	25963	broad.mit.edu	37	15	42510606	42510606	+	Intron	SNP	A	G	G			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM90B	79953	broad.mit.edu	37	20	24524025	24524025	+	Missense_Mutation	SNP	G	A	A	rs139628724	byFrequency	TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM90B	79953	broad.mit.edu	37	20	24524025	24524025	+	Missense_Mutation	SNP	G	A	A	rs139628724	byFrequency	TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM99	147184	broad.mit.edu	37	17	38991095	38991095	+	Silent	SNP	C	T	T			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM99	147184	broad.mit.edu	37	17	38991095	38991095	+	Silent	SNP	C	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMF1	7110	broad.mit.edu	37	3	69101202	69101202	+	Silent	SNP	G	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMF1	7110	broad.mit.edu	37	3	69101202	69101202	+	Silent	SNP	G	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS11D	9407	broad.mit.edu	37	4	68688033	68688033	+	3'UTR	SNP	C	T	T			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS11D	9407	broad.mit.edu	37	4	68688033	68688033	+	3'UTR	SNP	C	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM36	55521	broad.mit.edu	37	5	114466398	114466398	+	Missense_Mutation	SNP	A	C	C			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM36	55521	broad.mit.edu	37	5	114466398	114466398	+	Missense_Mutation	SNP	A	C	C			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TROAP	10024	broad.mit.edu	37	12	49724313	49724313	+	Missense_Mutation	SNP	G	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPC4AP	26133	broad.mit.edu	37	20	33608968	33608968	+	Intron	SNP	C	T	T			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPC4AP	26133	broad.mit.edu	37	20	33608968	33608968	+	Intron	SNP	C	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179407873	179407873	+	Missense_Mutation	SNP	C	T	T			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179407873	179407873	+	Missense_Mutation	SNP	C	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179412361	179412361	+	Missense_Mutation	SNP	C	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TXNDC15	79770	broad.mit.edu	37	5	134235280	134235280	+	Missense_Mutation	SNP	T	G	G			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TXNDC15	79770	broad.mit.edu	37	5	134235280	134235280	+	Missense_Mutation	SNP	T	G	G			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TYW1B	441250	broad.mit.edu	37	7	72280928	72280928	+	Intron	SNP	G	C	C			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE3A	7337	broad.mit.edu	37	15	25652310	25652310	+	Intron	SNP	A	G	G			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE3A	7337	broad.mit.edu	37	15	25652310	25652310	+	Intron	SNP	A	G	G			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	215807951	215807951	+	Missense_Mutation	SNP	C	T	T			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	215807951	215807951	+	Missense_Mutation	SNP	C	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP39	10713	broad.mit.edu	37	2	85868209	85868209	+	Missense_Mutation	SNP	G	C	C			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	98510230	98510230	+	IGR	SNP	G	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	89486916	89486916	+	IGR	SNP	C	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	75057870	75057870	+	IGR	SNP	C	T	T			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32926530	32926530	+	IGR	SNP	C	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33571953	33571953	+	IGR	SNP	C	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	60397273	60397273	+	IGR	SNP	C	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22499360	22499360	+	IGR	SNP	C	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	191115560	191115561	+	IGR	INS	-	T	T			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	78240327	78240327	+	IGR	SNP	C	T	T			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16123370	16123370	+	IGR	SNP	G	T	T			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91937564	91937565	+	IGR	DNP	GA	TG	TG			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	197847486	197847486	+	IGR	SNP	G	T	T			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	27047305	27047305	+	IGR	SNP	G	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	165455754	165455754	+	IGR	SNP	C	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	30365644	30365644	+	IGR	SNP	C	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	74226478	74226478	+	IGR	SNP	G	T	T			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	159026070	159026070	+	IGR	SNP	A	G	G			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	61968770	61968770	+	IGR	DEL	G	-	-	rs61713499		TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	138296124	138296124	+	IGR	SNP	G	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	48035004	48035004	+	IGR	SNP	C	G	G			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	37853350	37853350	+	IGR	SNP	G	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42600182	42600182	+	IGR	SNP	T	A	A	rs143099782		TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	98510230	98510230	+	IGR	SNP	G	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55070392	55070392	+	IGR	SNP	T	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55086066	55086066	+	IGR	SNP	G	C	C			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	6016413	6016413	+	IGR	SNP	G	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	62815383	62815383	+	IGR	SNP	G	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	89501370	89501370	+	IGR	SNP	G	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	96514936	96514937	+	IGR	DNP	CC	AA	AA			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	75057870	75057870	+	IGR	SNP	C	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	19955433	19955433	+	IGR	SNP	C	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	25591964	25591964	+	IGR	SNP	C	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19475780	19475780	+	IGR	SNP	C	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32926530	32926530	+	IGR	SNP	C	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33391242	33391242	+	IGR	SNP	C	G	G			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34724501	34724501	+	IGR	SNP	G	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	60397273	60397273	+	IGR	SNP	C	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22499360	22499360	+	IGR	SNP	C	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	7056579	7056579	+	IGR	SNP	C	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	191115560	191115561	+	IGR	INS	-	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	198918674	198918674	+	IGR	SNP	A	C	C			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	78240327	78240327	+	IGR	SNP	C	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	96913407	96913407	+	IGR	SNP	A	G	G			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	10367430	10367430	+	IGR	SNP	C	G	G			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16123370	16123370	+	IGR	SNP	G	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	13554895	13554895	+	IGR	SNP	T	C	C			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	219065879	219065879	+	IGR	SNP	C	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	26385022	26385022	+	IGR	SNP	C	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91937564	91937565	+	IGR	DNP	GA	TG	TG			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	197847486	197847486	+	IGR	SNP	G	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	27047305	27047305	+	IGR	SNP	G	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	9385429	9385429	+	IGR	SNP	C	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	165455754	165455754	+	IGR	SNP	C	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	28927465	28927465	+	IGR	SNP	C	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	30365644	30365644	+	IGR	SNP	C	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	74226478	74226478	+	IGR	SNP	G	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	159026070	159026070	+	IGR	SNP	A	G	G			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	138296124	138296124	+	IGR	SNP	G	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	48035004	48035004	+	IGR	SNP	C	G	G			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	62115063	62115063	+	IGR	DEL	G	-	-			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	7885894	7885894	+	IGR	SNP	C	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	90256042	90256042	+	IGR	SNP	C	G	G			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	93156258	93156258	+	IGR	SNP	T	G	G			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68358185	68358185	+	IGR	SNP	T	G	G			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS53	55275	broad.mit.edu	37	17	534814	534814	+	Missense_Mutation	SNP	T	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS53	55275	broad.mit.edu	37	17	534814	534814	+	Missense_Mutation	SNP	T	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XYLB	9942	broad.mit.edu	37	3	38454427	38454427	+	Missense_Mutation	SNP	G	T	T			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XYLB	9942	broad.mit.edu	37	3	38454427	38454427	+	Missense_Mutation	SNP	G	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XYLT1	64131	broad.mit.edu	37	16	17202725	17202725	+	Missense_Mutation	SNP	C	G	G			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XYLT1	64131	broad.mit.edu	37	16	17202725	17202725	+	Missense_Mutation	SNP	C	G	G			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBBX	79740	broad.mit.edu	37	3	167006659	167006659	+	Intron	SNP	C	G	G			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3H12C	85463	broad.mit.edu	37	11	110007729	110007729	+	Silent	SNP	C	T	T			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3H12C	85463	broad.mit.edu	37	11	110007729	110007729	+	Silent	SNP	C	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCCHC24	219654	broad.mit.edu	37	10	81153970	81153970	+	Intron	SNP	C	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCCHC24	219654	broad.mit.edu	37	10	81153970	81153970	+	Intron	SNP	C	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF12	7559	broad.mit.edu	37	7	6732203	6732203	+	Missense_Mutation	SNP	C	G	G			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF12	7559	broad.mit.edu	37	7	6732203	6732203	+	Missense_Mutation	SNP	C	G	G			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF304	57343	broad.mit.edu	37	19	57868090	57868090	+	Nonsense_Mutation	SNP	G	T	T			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF304	57343	broad.mit.edu	37	19	57868090	57868090	+	Nonsense_Mutation	SNP	G	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF420	147923	broad.mit.edu	37	19	37582163	37582163	+	Intron	SNP	G	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF420	147923	broad.mit.edu	37	19	37582163	37582163	+	Intron	SNP	G	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF490	57474	broad.mit.edu	37	19	12693580	12693580	+	Intron	SNP	T	C	C			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF490	57474	broad.mit.edu	37	19	12693580	12693580	+	Intron	SNP	T	C	C			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF525	170958	broad.mit.edu	37	19	53886133	53886133	+	3'UTR	SNP	C	T	T			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF525	170958	broad.mit.edu	37	19	53886133	53886133	+	3'UTR	SNP	C	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF648	127665	broad.mit.edu	37	1	182026337	182026337	+	Missense_Mutation	SNP	T	C	C			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF770	54989	broad.mit.edu	37	15	35274098	35274098	+	Missense_Mutation	SNP	C	T	T			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF770	54989	broad.mit.edu	37	15	35274816	35274816	+	Missense_Mutation	SNP	C	T	T			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF770	54989	broad.mit.edu	37	15	35274098	35274098	+	Missense_Mutation	SNP	C	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF770	54989	broad.mit.edu	37	15	35274816	35274816	+	Missense_Mutation	SNP	C	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	131905024	131905024	+	Intron	SNP	C	T	T			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	49239582	49239582	+	5'UTR	SNP	G	T	T			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	23019674	23019674	+	Intron	SNP	G	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	25422019	25422019	+	Intron	SNP	G	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	44021286	44021286	+	5'Flank	SNP	G	C	C			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	69343128	69343128	+	Missense_Mutation	SNP	C	T	T			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	11297908	11297908	+	Intron	SNP	T	C	C			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	90746160	90746160	+	Missense_Mutation	SNP	G	C	C			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	131905024	131905024	+	Intron	SNP	C	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	49239582	49239582	+	5'UTR	SNP	G	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	31267463	31267463	+	Intron	SNP	G	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	23019674	23019674	+	Intron	SNP	G	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	102303140	102303140	+	5'Flank	SNP	G	C	C			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	25422019	25422019	+	Intron	SNP	G	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	44021286	44021286	+	5'Flank	SNP	G	C	C			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	21599153	21599153	+	Intron	SNP	C	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	23328171	23328171	+	RNA	SNP	G	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	21753709	21753709	+	Intron	SNP	C	G	G			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	69343128	69343128	+	Missense_Mutation	SNP	C	T	T			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	11297908	11297908	+	Intron	SNP	T	C	C			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	90746160	90746160	+	Missense_Mutation	SNP	G	C	C			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	M	3697	3697	+	RNA	SNP	G	A	A			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	M	7776	7776	+	RNA	SNP	T	C	C			TCGA-35-3615-01A-01W-0928-08	TCGA-35-3615-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
