Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
AARS	16	broad.mit.edu	37	16	70310248	70310248	+	Intron	SNP	T	C	C			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA4	24	broad.mit.edu	37	1	94574115	94574115	+	Intron	SNP	C	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA9	10350	broad.mit.edu	37	17	67013932	67013932	+	Splice_Site	SNP	T	C	C			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC6	368	broad.mit.edu	37	16	16284195	16284195	+	Silent	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCG4	64137	broad.mit.edu	37	11	119024706	119024706	+	Intron	SNP	G	C	C			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACOX1	51	broad.mit.edu	37	17	73945907	73945907	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSF3	197322	broad.mit.edu	37	16	89178685	89178685	+	Intron	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSM5	54988	broad.mit.edu	37	16	20442600	20442600	+	Missense_Mutation	SNP	G	T	T	rs144464842	by1000genomes	TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAL	161823	broad.mit.edu	37	15	43635170	43635170	+	Intron	SNP	A	G	G			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM11	4185	broad.mit.edu	37	17	42854901	42854901	+	Silent	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106963072	106963072	+	RNA	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	107062297	107062297	+	RNA	DEL	G	-	-			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33549521	33549521	+	Intron	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS16	170690	broad.mit.edu	37	5	5303444	5303444	+	Silent	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTSL1	92949	broad.mit.edu	37	9	18826354	18826354	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY10	55811	broad.mit.edu	37	1	167805451	167805451	+	Intron	SNP	C	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY6	112	broad.mit.edu	37	12	49171215	49171216	+	Missense_Mutation	DNP	GC	AA	AA			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADH1A	124	broad.mit.edu	37	4	100237013	100237013	+	Intron	SNP	A	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF2	2334	broad.mit.edu	37	X	148049134	148049134	+	Intron	SNP	G	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGPAT4	56895	broad.mit.edu	37	6	161575173	161575173	+	Intron	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGXT2L1	64850	broad.mit.edu	37	4	109663845	109663845	+	Intron	SNP	A	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AJAP1	55966	broad.mit.edu	37	1	4829790	4829790	+	Intron	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALB	213	broad.mit.edu	37	4	74277728	74277728	+	Silent	SNP	G	C	C			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH1A3	220	broad.mit.edu	37	15	101425676	101425676	+	Intron	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMFR	267	broad.mit.edu	37	16	56448086	56448086	+	Intron	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMPD1	270	broad.mit.edu	37	1	115231560	115231560	+	Intron	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD30A	91074	broad.mit.edu	37	10	37454155	37454155	+	Intron	SNP	C	G	G			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD56	345079	broad.mit.edu	37	4	77817346	77817346	+	Nonsense_Mutation	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO1	55107	broad.mit.edu	37	11	69972347	69972347	+	Intron	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANTXR1	84168	broad.mit.edu	37	2	69420603	69420603	+	Intron	SNP	A	G	G			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APEH	327	broad.mit.edu	37	3	49712513	49712513	+	Intron	SNP	G	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARGFX	503582	broad.mit.edu	37	3	121289731	121289731	+	Intron	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP9	64333	broad.mit.edu	37	12	57870900	57870900	+	Intron	SNP	C	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARL8B	55207	broad.mit.edu	37	3	5220495	5220495	+	3'UTR	SNP	C	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATM	472	broad.mit.edu	37	11	108115735	108115735	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATM	472	broad.mit.edu	37	11	108186770	108186770	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP11C	286410	broad.mit.edu	37	X	138856885	138856885	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP11C	286410	broad.mit.edu	37	X	138884317	138884317	+	Intron	SNP	G	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1A3	478	broad.mit.edu	37	19	42492798	42492798	+	Intron	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAT2L2	23215	broad.mit.edu	37	1	171535858	171535858	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCL9	607	broad.mit.edu	37	1	147091685	147091685	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRD8	10902	broad.mit.edu	37	5	137505153	137505153	+	Intron	SNP	C	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTAF1	9044	broad.mit.edu	37	10	93773549	93773549	+	Missense_Mutation	SNP	T	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTBD6	90135	broad.mit.edu	37	14	105716678	105716678	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf11	83938	broad.mit.edu	37	10	78084271	78084271	+	Intron	SNP	A	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf11	55726	broad.mit.edu	37	12	27070649	27070649	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf68	283600	broad.mit.edu	37	14	100795911	100795911	+	Missense_Mutation	SNP	T	G	G	rs150644466		TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf68	283600	broad.mit.edu	37	14	100795933	100795933	+	Missense_Mutation	SNP	T	G	G			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C18orf34	374864	broad.mit.edu	37	18	30846968	30846968	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf51	148523	broad.mit.edu	37	1	150255696	150255696	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf87	127795	broad.mit.edu	37	1	60466673	60466673	+	Intron	SNP	C	G	G			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf186	149954	broad.mit.edu	37	20	31695645	31695645	+	Intron	SNP	C	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf96	140680	broad.mit.edu	37	20	256468	256468	+	Intron	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf27B	408029	broad.mit.edu	37	2	132558418	132558418	+	Intron	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf30	152405	broad.mit.edu	37	3	118867243	118867243	+	Intron	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf63	23272	broad.mit.edu	37	3	56675561	56675561	+	Missense_Mutation	SNP	T	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4BPA	722	broad.mit.edu	37	1	207297525	207297525	+	Nonsense_Mutation	SNP	A	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf35	85438	broad.mit.edu	37	4	71200918	71200918	+	Nonsense_Mutation	SNP	T	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf41	60684	broad.mit.edu	37	4	184614953	184614953	+	Intron	SNP	G	C	C			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5orf25	375484	broad.mit.edu	37	5	175763947	175763947	+	Intron	SNP	A	G	G			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf138	442213	broad.mit.edu	37	6	47846657	47846657	+	Silent	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf58	352999	broad.mit.edu	37	6	127901387	127901387	+	Intron	SNP	T	C	C			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8B	732	broad.mit.edu	37	1	57406675	57406675	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8orf34	116328	broad.mit.edu	37	8	69688737	69688737	+	Intron	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf131	138724	broad.mit.edu	37	9	35045314	35045314	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf79	286234	broad.mit.edu	37	9	90499889	90499889	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA3	761	broad.mit.edu	37	8	86352059	86352059	+	Silent	SNP	T	C	C	rs141354884		TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1H	8912	broad.mit.edu	37	16	1260867	1260867	+	Silent	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CADM2	253559	broad.mit.edu	37	3	86115952	86115952	+	3'UTR	SNP	G	C	C			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CARD11	84433	broad.mit.edu	37	7	2962898	2962898	+	Silent	SNP	C	G	G			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASZ1	54897	broad.mit.edu	37	1	10702979	10702979	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC129	223075	broad.mit.edu	37	7	31617846	31617846	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC158	339965	broad.mit.edu	37	4	77234393	77234393	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC22	28952	broad.mit.edu	37	X	49093385	49093385	+	Intron	SNP	T	G	G			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC73	493860	broad.mit.edu	37	11	32635190	32635190	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC87	55231	broad.mit.edu	37	11	66358704	66358704	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC91	55297	broad.mit.edu	37	12	28458532	28458532	+	Intron	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCT5	22948	broad.mit.edu	37	5	10250442	10250442	+	5'UTR	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD1B	910	broad.mit.edu	37	1	158299037	158299037	+	Intron	SNP	G	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD96	10225	broad.mit.edu	37	3	111325760	111325760	+	Intron	SNP	G	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC6	990	broad.mit.edu	37	17	38450864	38450864	+	Intron	SNP	C	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH8	1006	broad.mit.edu	37	16	61854900	61854900	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH9	1007	broad.mit.edu	37	5	26915712	26915712	+	Intron	SNP	G	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDHR3	222256	broad.mit.edu	37	7	105615275	105615275	+	Intron	SNP	C	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDKL3	51265	broad.mit.edu	37	5	133541766	133541766	+	Silent	SNP	A	G	G			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDYL2	124359	broad.mit.edu	37	16	80642134	80642134	+	Splice_Site	SNP	T	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CGRRF1	10668	broad.mit.edu	37	14	55004904	55004904	+	Nonsense_Mutation	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD8	57680	broad.mit.edu	37	14	21868347	21868347	+	Nonsense_Mutation	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHGB	1114	broad.mit.edu	37	20	5905682	5905682	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCA4	22802	broad.mit.edu	37	1	87036875	87036875	+	Missense_Mutation	SNP	T	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLDN14	23562	broad.mit.edu	37	21	37833634	37833634	+	Silent	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNBD1	168975	broad.mit.edu	37	8	88249177	88249177	+	Missense_Mutation	SNP	T	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP2	26047	broad.mit.edu	37	7	147183029	147183029	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103544335	103544335	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL15A1	1306	broad.mit.edu	37	9	101810095	101810095	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL1A1	1277	broad.mit.edu	37	17	48275403	48275403	+	Intron	SNP	C	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139833476	139833476	+	Missense_Mutation	SNP	G	T	T	rs141992049	byFrequency	TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COMMD8	54951	broad.mit.edu	37	4	47455122	47455122	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COMP	1311	broad.mit.edu	37	19	18895217	18895217	+	Intron	SNP	C	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CORIN	10699	broad.mit.edu	37	4	47628279	47628279	+	Intron	SNP	T	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CORO1A	11151	broad.mit.edu	37	16	30198429	30198429	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPB2	1361	broad.mit.edu	37	13	46632576	46632576	+	Intron	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPS1	1373	broad.mit.edu	37	2	211504640	211504640	+	Intron	SNP	T	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRISP1	167	broad.mit.edu	37	6	49808671	49808671	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRLF2	64109	broad.mit.edu	37	X	1331406	1331406	+	Intron	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRX	1406	broad.mit.edu	37	19	48339455	48339455	+	Intron	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRX	1406	broad.mit.edu	37	19	48342705	48342705	+	Silent	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRYBA4	1413	broad.mit.edu	37	22	27021629	27021629	+	Intron	SNP	T	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRYBB1	1414	broad.mit.edu	37	22	27012292	27012292	+	5'UTR	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34189984	34189984	+	Intron	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113246620	113246620	+	Nonsense_Mutation	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113987938	113987938	+	Intron	SNP	C	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	114111196	114111196	+	Intron	SNP	T	C	C			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTAGE1	64693	broad.mit.edu	37	18	19997210	19997210	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA2	1496	broad.mit.edu	37	2	80773162	80773162	+	Nonsense_Mutation	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTR9	9646	broad.mit.edu	37	11	10772811	10772811	+	5'UTR	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTSL3	392360	broad.mit.edu	37	9	90388337	90388337	+	Intron	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf22	170063	broad.mit.edu	37	X	35994205	35994205	+	Intron	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf40B	541578	broad.mit.edu	37	X	149100952	149100952	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf59	286464	broad.mit.edu	37	X	36103605	36103605	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYLC2	1539	broad.mit.edu	37	9	105767937	105767937	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2C9	1559	broad.mit.edu	37	10	96732014	96732014	+	Intron	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2F1	1572	broad.mit.edu	37	19	41630815	41630815	+	Intron	SNP	C	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4F8	11283	broad.mit.edu	37	19	15740149	15740149	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4X1	260293	broad.mit.edu	37	1	47489533	47489533	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP7B1	9420	broad.mit.edu	37	8	65537096	65537096	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DARC	2532	broad.mit.edu	37	1	159176052	159176052	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF12L1	139170	broad.mit.edu	37	X	125685889	125685889	+	Missense_Mutation	SNP	T	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCC	1630	broad.mit.edu	37	18	50683801	50683801	+	Missense_Mutation	SNP	G	A	A	rs138053380		TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCD	117159	broad.mit.edu	37	12	55039440	55039440	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX41	51428	broad.mit.edu	37	5	176940312	176940312	+	Intron	DEL	C	-	-			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND2C	163259	broad.mit.edu	37	1	115143585	115143585	+	Intron	SNP	T	C	C			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKI	9162	broad.mit.edu	37	7	137170141	137170141	+	Silent	SNP	G	C	C			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIO3	1735	broad.mit.edu	37	14	102027869	102027869	+	5'UTR	SNP	A	G	G			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMBT1	1755	broad.mit.edu	37	10	124377722	124377722	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMD	1756	broad.mit.edu	37	X	32509489	32509489	+	Nonsense_Mutation	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMD	1756	broad.mit.edu	37	X	32663083	32663083	+	Nonsense_Mutation	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNA2	1763	broad.mit.edu	37	10	70191947	70191947	+	Intron	SNP	G	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH17	8632	broad.mit.edu	37	17	76548888	76548888	+	Splice_Site	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH7	56171	broad.mit.edu	37	2	196737076	196737076	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11572653	11572653	+	Intron	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNPEP	23549	broad.mit.edu	37	2	220239586	220239586	+	Silent	SNP	G	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPEP1	1800	broad.mit.edu	37	16	89703136	89703136	+	Intron	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP3	10072	broad.mit.edu	37	11	66264589	66264589	+	Intron	DEL	G	-	-			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSE	29940	broad.mit.edu	37	6	116758380	116758380	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUOX2	50506	broad.mit.edu	37	15	45394000	45394000	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDC4	23644	broad.mit.edu	37	16	67918040	67918040	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDN2	1907	broad.mit.edu	37	1	41948221	41948221	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGLN2	112398	broad.mit.edu	37	19	41313712	41313712	+	Splice_Site	SNP	A	C	C			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF4A2	1974	broad.mit.edu	37	3	186502305	186502305	+	Intron	SNP	G	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELF4	2000	broad.mit.edu	37	X	129203063	129203063	+	Intron	SNP	G	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EML3	256364	broad.mit.edu	37	11	62375661	62375661	+	Intron	SNP	T	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMR1	2015	broad.mit.edu	37	19	6896610	6896610	+	Intron	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPP2	5168	broad.mit.edu	37	8	120605867	120605867	+	Intron	SNP	C	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPB41L4B	54566	broad.mit.edu	37	9	112025334	112025334	+	Silent	SNP	T	C	C			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPC2	26122	broad.mit.edu	37	2	149542324	149542324	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA5	2044	broad.mit.edu	37	4	66356315	66356315	+	Silent	SNP	T	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA6	285220	broad.mit.edu	37	3	97167531	97167531	+	Nonsense_Mutation	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPS15L1	58513	broad.mit.edu	37	19	16496038	16496038	+	Intron	SNP	A	C	C			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERGIC3	51614	broad.mit.edu	37	20	34136178	34136178	+	Intron	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERN2	10595	broad.mit.edu	37	16	23721647	23721647	+	Intron	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESX1	80712	broad.mit.edu	37	X	103497226	103497226	+	Intron	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EVC	2121	broad.mit.edu	37	4	5798977	5798977	+	Intron	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EVPL	2125	broad.mit.edu	37	17	74019680	74019680	+	Missense_Mutation	SNP	C	A	A	rs78044548	byFrequency;by1000genomes	TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F2RL2	2151	broad.mit.edu	37	5	75919099	75919099	+	5'UTR	SNP	A	G	G			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F8	2157	broad.mit.edu	37	X	154182323	154182323	+	Intron	SNP	A	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM134B	54463	broad.mit.edu	37	5	16477956	16477956	+	Intron	SNP	G	C	C			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139155445	139155445	+	Intron	SNP	G	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM170A	340069	broad.mit.edu	37	5	118968429	118968429	+	Intron	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM3A	60343	broad.mit.edu	37	X	153736186	153736186	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM58A	92002	broad.mit.edu	37	X	152857875	152857875	+	Intron	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM71B	153745	broad.mit.edu	37	5	156590618	156590618	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FANCD2	2177	broad.mit.edu	37	3	10070484	10070484	+	Intron	SNP	C	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FASLG	356	broad.mit.edu	37	1	172629175	172629175	+	Intron	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FASN	2194	broad.mit.edu	37	17	80040377	80040377	+	Intron	DEL	G	-	-			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT2	2196	broad.mit.edu	37	5	150897191	150897191	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT4	79633	broad.mit.edu	37	4	126237791	126237791	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGD5	152273	broad.mit.edu	37	3	14861865	14861865	+	Silent	SNP	C	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLT1	2321	broad.mit.edu	37	13	28919716	28919716	+	Intron	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLT4	2324	broad.mit.edu	37	5	180052973	180052973	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN2	56776	broad.mit.edu	37	1	240371461	240371461	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMR1	2332	broad.mit.edu	37	X	147022066	147022066	+	Intron	SNP	T	C	C			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOLH1B	219595	broad.mit.edu	37	11	89423997	89423997	+	Intron	SNP	C	G	G			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FTSJ1	24140	broad.mit.edu	37	X	48341100	48341100	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FTSJD2	23070	broad.mit.edu	37	6	37443833	37443833	+	Intron	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAB4	128954	broad.mit.edu	37	22	17443596	17443596	+	3'UTR	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABBR1	2550	broad.mit.edu	37	6	29541930	29541930	+	Intron	SNP	G	T	T	rs115684491	by1000genomes	TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA3	2556	broad.mit.edu	37	X	151336626	151336626	+	3'UTR	SNP	G	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAD2	2572	broad.mit.edu	37	10	26559610	26559610	+	Silent	SNP	C	A	A	rs1805397	byFrequency;by1000genomes	TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT14	79623	broad.mit.edu	37	2	31215762	31215762	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT9	50614	broad.mit.edu	37	12	132682499	132682499	+	Silent	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBP7	388646	broad.mit.edu	37	1	89598950	89598950	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCN1L1	10985	broad.mit.edu	37	12	120595817	120595817	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GGT5	2687	broad.mit.edu	37	22	24629836	24629836	+	Intron	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLRA2	2742	broad.mit.edu	37	X	14748344	14748344	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPATCH8	23131	broad.mit.edu	37	17	42483489	42483489	+	Intron	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR112	139378	broad.mit.edu	37	X	135426564	135426564	+	Silent	SNP	T	C	C			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR112	139378	broad.mit.edu	37	X	135428319	135428319	+	Silent	SNP	A	C	C			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR139	124274	broad.mit.edu	37	16	20043689	20043689	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR142	350383	broad.mit.edu	37	17	72368677	72368677	+	Nonsense_Mutation	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR85	54329	broad.mit.edu	37	7	112723734	112723734	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIA1	2890	broad.mit.edu	37	5	153174228	153174228	+	Intron	SNP	T	C	C			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRID2	2895	broad.mit.edu	37	4	94159684	94159684	+	Intron	SNP	T	C	C			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK1	2897	broad.mit.edu	37	21	31062202	31062202	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIP2	80852	broad.mit.edu	37	3	14538040	14538040	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRK7	131890	broad.mit.edu	37	3	141526434	141526434	+	Intron	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM4	2914	broad.mit.edu	37	6	34029667	34029667	+	Intron	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM7	2917	broad.mit.edu	37	3	6903612	6903612	+	Intron	SNP	C	A	A	rs150593300	by1000genomes	TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GYPA	2993	broad.mit.edu	37	4	144928021	144928021	+	Intron	SNP	C	G	G			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GYPA	2993	broad.mit.edu	37	4	144928053	144928053	+	Intron	SNP	C	G	G			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HADHB	3032	broad.mit.edu	37	2	26477077	26477077	+	Intron	SNP	A	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCFC1	3054	broad.mit.edu	37	X	153228906	153228906	+	Intron	SNP	C	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCN1	348980	broad.mit.edu	37	5	45262863	45262863	+	Silent	SNP	A	G	G			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC6	10013	broad.mit.edu	37	X	48682234	48682234	+	Intron	SNP	C	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECTD1	25831	broad.mit.edu	37	14	31585353	31585353	+	Intron	SNP	T	C	C			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEPACAM2	253012	broad.mit.edu	37	7	92848849	92848849	+	Intron	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HHIPL2	79802	broad.mit.edu	37	1	222717353	222717353	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HK3	3101	broad.mit.edu	37	5	176308331	176308331	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNMT	3176	broad.mit.edu	37	2	138758727	138758727	+	Intron	SNP	T	C	C			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXB13	10481	broad.mit.edu	37	17	46805195	46805195	+	Intron	DEL	C	-	-			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSD3B2	3284	broad.mit.edu	37	1	119964814	119964814	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPB1	3315	broad.mit.edu	37	7	75933446	75933446	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTATSF1	27336	broad.mit.edu	37	X	135583115	135583115	+	Intron	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR3C	170572	broad.mit.edu	37	3	183772869	183772869	+	Intron	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HUS1	3364	broad.mit.edu	37	7	48007507	48007507	+	Missense_Mutation	SNP	T	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IDH3G	3421	broad.mit.edu	37	X	153052271	153052271	+	Silent	SNP	G	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IDS	3423	broad.mit.edu	37	X	148585626	148585626	+	Intron	SNP	C	G	G			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFLTD1	160492	broad.mit.edu	37	12	25679179	25679179	+	Intron	SNP	G	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGDCC3	9543	broad.mit.edu	37	15	65622572	65622572	+	Intron	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL31RA	133396	broad.mit.edu	37	5	55195674	55195674	+	Intron	SNP	G	C	C			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INPP4A	3631	broad.mit.edu	37	2	99182412	99182412	+	Intron	SNP	A	G	G			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INPP4B	8821	broad.mit.edu	37	4	143226509	143226509	+	Intron	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INPP5D	3635	broad.mit.edu	37	2	234104231	234104231	+	Intron	SNP	G	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA10	8515	broad.mit.edu	37	1	145539490	145539490	+	Intron	SNP	T	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAD	3681	broad.mit.edu	37	16	31427913	31427913	+	Silent	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAX	3687	broad.mit.edu	37	16	31374029	31374029	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH5L	347365	broad.mit.edu	37	X	54776267	54776267	+	3'UTR	SNP	C	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH5	80760	broad.mit.edu	37	10	7708826	7708826	+	Silent	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KANK4	163782	broad.mit.edu	37	1	62740108	62740108	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH8	131096	broad.mit.edu	37	3	19432274	19432274	+	Intron	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK2	3776	broad.mit.edu	37	1	215345436	215345436	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNV1	27012	broad.mit.edu	37	8	110980325	110980325	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM4C	23081	broad.mit.edu	37	9	6814607	6814607	+	Intron	SNP	A	G	G			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDR	3791	broad.mit.edu	37	4	55956360	55956360	+	Intron	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0947	23379	broad.mit.edu	37	5	5457835	5457836	+	Frame_Shift_Ins	INS	-	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1109	84162	broad.mit.edu	37	4	123179859	123179859	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1217	56243	broad.mit.edu	37	10	24762124	24762124	+	Intron	SNP	A	C	C			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1370	56204	broad.mit.edu	37	15	52902417	52902417	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1549	57670	broad.mit.edu	37	7	138546052	138546052	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1797	54914	broad.mit.edu	37	9	20717802	20717802	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF4B	285643	broad.mit.edu	37	5	154395374	154395374	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLF3	51274	broad.mit.edu	37	4	38690565	38690565	+	Silent	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHDC4	54758	broad.mit.edu	37	16	87742994	87742994	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLK15	55554	broad.mit.edu	37	19	51329826	51329826	+	Intron	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLK3	354	broad.mit.edu	37	19	51362775	51362775	+	Intron	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLRF1	51348	broad.mit.edu	37	12	9985974	9985974	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRAS	3845	broad.mit.edu	37	12	25398285	25398285	+	Missense_Mutation	SNP	C	A	A	rs121913530		TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT6A	3853	broad.mit.edu	37	12	52882427	52882427	+	Intron	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP19-6	337973	broad.mit.edu	37	21	31913933	31913933	+	3'UTR	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP19-6	337973	broad.mit.edu	37	21	31913955	31913955	+	3'UTR	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LBP	3929	broad.mit.edu	37	20	36989359	36989359	+	Missense_Mutation	SNP	T	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LEF1	51176	broad.mit.edu	37	4	109004633	109004633	+	Intron	SNP	C	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRA5	353514	broad.mit.edu	37	19	54818980	54818980	+	Intron	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB1	10859	broad.mit.edu	37	19	55144512	55144512	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB3	11025	broad.mit.edu	37	19	54745979	54745979	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC649330	649330	broad.mit.edu	37	1	12907355	12907355	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	22540774	22540774	+	Intron	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRFN5	145581	broad.mit.edu	37	14	42367975	42367975	+	Intron	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC42	115353	broad.mit.edu	37	1	54418223	54418223	+	Intron	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRN1	57633	broad.mit.edu	37	3	3888136	3888136	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTBP1	4052	broad.mit.edu	37	2	33590570	33590570	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTBP2	4053	broad.mit.edu	37	14	74999213	74999213	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYAR	55646	broad.mit.edu	37	4	4275346	4275346	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
M6PR	4074	broad.mit.edu	37	12	9094325	9094325	+	3'UTR	SNP	A	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAEL	84944	broad.mit.edu	37	1	166973413	166973413	+	Intron	SNP	T	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAFG	4097	broad.mit.edu	37	17	79880889	79880889	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEA3	4102	broad.mit.edu	37	X	151935230	151935230	+	Frame_Shift_Del	DEL	C	-	-			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEC3	139081	broad.mit.edu	37	X	140953473	140953473	+	Intron	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAOB	4129	broad.mit.edu	37	X	43652683	43652683	+	Missense_Mutation	SNP	G	C	C	rs55815323		TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K14	9020	broad.mit.edu	37	17	43366551	43366551	+	Intron	SNP	G	C	C			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH11	441061	broad.mit.edu	37	5	16177941	16177941	+	Missense_Mutation	SNP	T	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARS2	92935	broad.mit.edu	37	2	198571774	198571774	+	Nonsense_Mutation	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MASP1	5648	broad.mit.edu	37	3	186953983	186953983	+	Intron	SNP	A	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MBD4	8930	broad.mit.edu	37	3	129155735	129155735	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCHR2	84539	broad.mit.edu	37	6	100395868	100395868	+	Intron	SNP	T	C	C			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEIS2	4212	broad.mit.edu	37	15	37187564	37187564	+	Intron	SNP	G	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEP1A	4224	broad.mit.edu	37	6	46801130	46801130	+	Silent	SNP	G	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MKRN3	7681	broad.mit.edu	37	15	23811332	23811332	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMEL1	79258	broad.mit.edu	37	1	2535558	2535558	+	Intron	SNP	C	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MME	4311	broad.mit.edu	37	3	154884756	154884756	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP16	4325	broad.mit.edu	37	8	89053837	89053837	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MORC1	27136	broad.mit.edu	37	3	108780903	108780903	+	Nonsense_Mutation	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MORC1	27136	broad.mit.edu	37	3	108829607	108829607	+	Missense_Mutation	SNP	T	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPV17L2	84769	broad.mit.edu	37	19	18306706	18306706	+	Intron	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSH4	4438	broad.mit.edu	37	1	76343982	76343982	+	Nonsense_Mutation	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSRA	4482	broad.mit.edu	37	8	10177547	10177547	+	Intron	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTM1	4534	broad.mit.edu	37	X	149832038	149832038	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTMR11	10903	broad.mit.edu	37	1	149901259	149901259	+	Intron	SNP	C	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTUS2	23281	broad.mit.edu	37	13	29598927	29598927	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9067777	9067777	+	Frame_Shift_Del	DEL	C	-	-			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYBPC2	4606	broad.mit.edu	37	19	50961849	50961849	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYCT1	80177	broad.mit.edu	37	6	153043128	153043128	+	Silent	SNP	C	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH11	4629	broad.mit.edu	37	16	15826687	15826687	+	Intron	SNP	T	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH1	4619	broad.mit.edu	37	17	10415291	10415291	+	Silent	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO16	23026	broad.mit.edu	37	13	109535429	109535429	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO5C	55930	broad.mit.edu	37	15	52539167	52539167	+	Silent	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	145608345	145608345	+	Intron	SNP	T	C	C			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAM2	4685	broad.mit.edu	37	21	22804584	22804584	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCKAP1L	3071	broad.mit.edu	37	12	54905485	54905485	+	Intron	SNP	C	G	G			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDST1	3340	broad.mit.edu	37	5	149919745	149919745	+	Silent	SNP	C	G	G			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDST4	64579	broad.mit.edu	37	4	115998013	115998013	+	Silent	SNP	A	G	G			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NETO1	81832	broad.mit.edu	37	18	70525974	70525974	+	Intron	SNP	T	G	G			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFATC2	4773	broad.mit.edu	37	20	50051770	50051770	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NHS	4810	broad.mit.edu	37	X	17742402	17742402	+	Intron	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NIPSNAP1	8508	broad.mit.edu	37	22	29954822	29954822	+	Intron	SNP	G	C	C			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLGN1	22871	broad.mit.edu	37	3	173322495	173322495	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLGN1	22871	broad.mit.edu	37	3	173997429	173997429	+	Missense_Mutation	SNP	T	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLGN4X	57502	broad.mit.edu	37	X	5947525	5947525	+	Intron	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLGN4X	57502	broad.mit.edu	37	X	5947527	5947527	+	Intron	SNP	A	C	C			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP12	91662	broad.mit.edu	37	19	54318306	54318306	+	Intron	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP4	147945	broad.mit.edu	37	19	56370337	56370337	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP5	126206	broad.mit.edu	37	19	56544123	56544123	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP9	338321	broad.mit.edu	37	19	56223993	56223993	+	Intron	SNP	T	C	C	rs149940917	by1000genomes	TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRX1	79671	broad.mit.edu	37	11	119045416	119045416	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPHS2	7827	broad.mit.edu	37	1	179533785	179533785	+	Intron	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NSUN2	54888	broad.mit.edu	37	5	6625775	6625775	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTNG1	22854	broad.mit.edu	37	1	107867518	107867518	+	Silent	SNP	G	T	T	rs142977353	byFrequency	TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK3	4916	broad.mit.edu	37	15	88476321	88476321	+	Missense_Mutation	SNP	T	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXF5	55998	broad.mit.edu	37	X	101092439	101092439	+	Intron	SNP	G	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OC90	729330	broad.mit.edu	37	8	133044267	133044267	+	Missense_Mutation	SNP	T	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OCRL	4952	broad.mit.edu	37	X	128691359	128691359	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ2	57451	broad.mit.edu	37	5	167625975	167625975	+	Silent	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OFD1	8481	broad.mit.edu	37	X	13786084	13786084	+	Intron	SNP	G	C	C			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OOEP	441161	broad.mit.edu	37	6	74078614	74078614	+	Intron	SNP	A	G	G			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPN5	221391	broad.mit.edu	37	6	47775776	47775776	+	Intron	SNP	G	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10A7	121364	broad.mit.edu	37	12	55615680	55615680	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR14I1	401994	broad.mit.edu	37	1	248845247	248845247	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L13	284521	broad.mit.edu	37	1	248262794	248262794	+	Silent	SNP	G	C	C			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L1P	26247	broad.mit.edu	37	1	248153905	248153905	+	Silent	SNP	G	C	C			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L2	26246	broad.mit.edu	37	1	248201720	248201720	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR3A4	390756	broad.mit.edu	37	17	3214252	3214252	+	Silent	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C16	219428	broad.mit.edu	37	11	55340015	55340015	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4E2	26686	broad.mit.edu	37	14	22133769	22133770	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51A2	401667	broad.mit.edu	37	11	4976851	4976851	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51Q1	390061	broad.mit.edu	37	11	5443842	5443842	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5A1	219982	broad.mit.edu	37	11	59211049	59211049	+	Silent	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5AC2	81050	broad.mit.edu	37	3	97806174	97806174	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5W2	390148	broad.mit.edu	37	11	55682036	55682036	+	Nonsense_Mutation	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR7G3	390883	broad.mit.edu	37	19	9236888	9236888	+	Missense_Mutation	SNP	C	A	A	rs61730396	byFrequency;by1000genomes	TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ORAI1	84876	broad.mit.edu	37	12	122064965	122064965	+	Intron	SNP	C	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBPL7	114881	broad.mit.edu	37	17	45891129	45891129	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTOA	146183	broad.mit.edu	37	16	21698670	21698670	+	Intron	SNP	C	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTOA	146183	broad.mit.edu	37	16	21739772	21739772	+	Intron	SNP	G	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P2RY8	286530	broad.mit.edu	37	X	1584615	1584615	+	Silent	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAK7	57144	broad.mit.edu	37	20	9520343	9520343	+	Intron	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAK7	57144	broad.mit.edu	37	20	9520345	9520345	+	Intron	SNP	T	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176563988	176563988	+	Silent	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAR4	347745	broad.mit.edu	37	15	25442973	25442973	+	Intron	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARD3	56288	broad.mit.edu	37	10	34400356	34400356	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH12	51294	broad.mit.edu	37	5	141336580	141336580	+	Silent	SNP	C	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	55782832	55782832	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	55996585	55996585	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH18	54510	broad.mit.edu	37	4	138442797	138442797	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB10	56126	broad.mit.edu	37	5	140574229	140574229	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB17	54661	broad.mit.edu	37	5	140537271	140537271	+	Silent	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB3	56132	broad.mit.edu	37	5	140481424	140481424	+	Silent	SNP	A	G	G			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCLO	27445	broad.mit.edu	37	7	82595113	82595113	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PC	5091	broad.mit.edu	37	11	66620019	66620019	+	Silent	SNP	G	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE3A	5139	broad.mit.edu	37	12	20787795	20787795	+	Intron	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4D	5144	broad.mit.edu	37	5	58286623	58286623	+	Intron	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDHA2	5161	broad.mit.edu	37	4	96761790	96761790	+	Silent	SNP	C	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZD2	23037	broad.mit.edu	37	5	32077588	32077588	+	Silent	SNP	C	G	G			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PET112L	5188	broad.mit.edu	37	4	152622522	152622522	+	Nonsense_Mutation	SNP	G	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PI15	51050	broad.mit.edu	37	8	75756215	75756215	+	Splice_Site	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3C2G	5288	broad.mit.edu	37	12	18435041	18435041	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3R6	146850	broad.mit.edu	37	17	8732033	8732033	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIP4K2C	79837	broad.mit.edu	37	12	57984953	57984953	+	5'UTR	SNP	G	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIWIL1	9271	broad.mit.edu	37	12	130839197	130839197	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLAGL2	5326	broad.mit.edu	37	20	30785235	30785235	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCE1	51196	broad.mit.edu	37	10	96064273	96064273	+	Silent	SNP	G	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLG	5340	broad.mit.edu	37	6	161159491	161159491	+	Intron	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLIN2	123	broad.mit.edu	37	9	19119764	19119764	+	Nonsense_Mutation	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA3	55558	broad.mit.edu	37	X	153693898	153693898	+	Intron	SNP	G	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PMFBP1	83449	broad.mit.edu	37	16	72184552	72184552	+	Silent	SNP	G	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNLIP	5406	broad.mit.edu	37	10	118320963	118320963	+	Intron	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEF	728378	broad.mit.edu	37	2	130877801	130877801	+	Silent	SNP	G	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEH	23784	broad.mit.edu	37	22	16287590	16287590	+	Frame_Shift_Del	DEL	C	-	-			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPAPDC1A	196051	broad.mit.edu	37	10	122280329	122280329	+	Intron	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPARGC1B	133522	broad.mit.edu	37	5	149206541	149206541	+	Intron	SNP	C	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPEF1	5475	broad.mit.edu	37	X	18800571	18800571	+	Intron	SNP	A	G	G			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R2B	5521	broad.mit.edu	37	5	146077811	146077811	+	Intron	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRB4	5545	broad.mit.edu	37	12	11083047	11083047	+	Intron	SNP	G	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM9	56979	broad.mit.edu	37	5	23524412	23524412	+	Intron	SNP	T	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCD	5580	broad.mit.edu	37	3	53223859	53223859	+	Intron	SNP	G	C	C			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PROM2	150696	broad.mit.edu	37	2	95941982	95941982	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRR14	78994	broad.mit.edu	37	16	30664596	30664596	+	Intron	SNP	A	G	G			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG9	5678	broad.mit.edu	37	19	43773657	43773657	+	5'UTR	SNP	A	G	G			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMD6	9861	broad.mit.edu	37	3	63996663	63996663	+	Intron	SNP	C	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSME4	23198	broad.mit.edu	37	2	54122078	54122078	+	Intron	SNP	G	C	C			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTER	9317	broad.mit.edu	37	10	16526805	16526805	+	Nonsense_Mutation	SNP	C	G	G			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTK2B	2185	broad.mit.edu	37	8	27277505	27277505	+	Missense_Mutation	SNP	G	T	T	rs140538134	byFrequency	TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTK7	5754	broad.mit.edu	37	6	43107027	43107027	+	Intron	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN3	5774	broad.mit.edu	37	9	112144670	112144670	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8492981	8492981	+	Splice_Site	SNP	T	C	C			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRN2	5799	broad.mit.edu	37	7	157414049	157414049	+	Intron	SNP	C	A	A	rs13308532		TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB14	51552	broad.mit.edu	37	9	123954505	123954505	+	Intron	SNP	G	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RACGAP1P	83956	broad.mit.edu	37	12	45457262	45457262	+	RNA	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD51AP1	10635	broad.mit.edu	37	12	4662122	4662122	+	Intron	SNP	G	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD51AP2	729475	broad.mit.edu	37	2	17697105	17697105	+	Nonsense_Mutation	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAGE	5891	broad.mit.edu	37	14	102717219	102717219	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAI14	26064	broad.mit.edu	37	5	34829927	34829927	+	Intron	SNP	C	G	G			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RANBP3	8498	broad.mit.edu	37	19	5977958	5977958	+	Intron	SNP	G	C	C			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAP1GAP2	23108	broad.mit.edu	37	17	2861283	2861283	+	Intron	SNP	C	G	G			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAP1GAP	5909	broad.mit.edu	37	1	21938085	21938085	+	Intron	SNP	G	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASAL2	9462	broad.mit.edu	37	1	178389684	178389684	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASAL2	9462	broad.mit.edu	37	1	178433251	178433251	+	Intron	SNP	C	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RCOR3	55758	broad.mit.edu	37	1	211485977	211485977	+	Intron	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG1A	5967	broad.mit.edu	37	2	79349206	79349206	+	Silent	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG3A	5068	broad.mit.edu	37	2	79384709	79384709	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REPS2	9185	broad.mit.edu	37	X	17152022	17152022	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFX4	5992	broad.mit.edu	37	12	107047992	107047992	+	Intron	SNP	G	T	T	rs149153430	by1000genomes	TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RMND5A	64795	broad.mit.edu	37	2	86992312	86992312	+	Silent	SNP	A	G	G			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF144B	255488	broad.mit.edu	37	6	18399923	18399923	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF14	9604	broad.mit.edu	37	5	141359874	141359875	+	Frame_Shift_Ins	INS	-	G	G			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF160	26046	broad.mit.edu	37	21	30331739	30331739	+	Intron	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO1	6091	broad.mit.edu	37	3	78680291	78680291	+	Intron	SNP	T	G	G			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPH3A	22895	broad.mit.edu	37	12	113333615	113333615	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL10	6134	broad.mit.edu	37	X	153629197	153629198	+	3'UTR	DNP	GG	TT	TT			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUFY1	80230	broad.mit.edu	37	5	178999666	178999666	+	Intron	SNP	T	C	C			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR1	6261	broad.mit.edu	37	19	38996576	38996576	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237880548	237880548	+	Silent	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	33955695	33955695	+	Intron	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SARM1	23098	broad.mit.edu	37	17	26715561	26715561	+	Intron	SNP	A	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDK1	221935	broad.mit.edu	37	7	4153064	4153064	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC23B	10483	broad.mit.edu	37	20	18535781	18535781	+	Silent	SNP	A	C	C			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA6B	10501	broad.mit.edu	37	19	4550923	4550923	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3TC2	79628	broad.mit.edu	37	5	148388514	148388514	+	Silent	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHANK3	85358	broad.mit.edu	37	22	51117202	51117203	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC12	89858	broad.mit.edu	37	19	52002489	52002489	+	Intron	SNP	G	C	C			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIPA1L3	23094	broad.mit.edu	37	19	38579466	38579466	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164741538	164741538	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLAMF1	6504	broad.mit.edu	37	1	160580535	160580535	+	3'UTR	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC10A3	8273	broad.mit.edu	37	X	153716544	153716544	+	Nonsense_Mutation	SNP	T	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A13	10165	broad.mit.edu	37	7	95820627	95820627	+	Intron	SNP	T	C	C			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC39A11	201266	broad.mit.edu	37	17	70643679	70643679	+	3'UTR	SNP	T	C	C			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A9	83697	broad.mit.edu	37	5	139751895	139751895	+	Silent	SNP	G	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC7A6OS	84138	broad.mit.edu	37	16	68338173	68338173	+	Intron	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMAD3	4088	broad.mit.edu	37	15	67358475	67358475	+	5'UTR	SNP	C	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMC1B	27127	broad.mit.edu	37	22	45758933	45758933	+	Intron	SNP	A	G	G			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNAPC4	6621	broad.mit.edu	37	9	139276314	139276314	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNHG3-RCC1	751867	broad.mit.edu	37	1	28835105	28835105	+	Intron	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD113-9	767569	broad.mit.edu	37	14	101409879	101409879	+	5'Flank	SNP	A	G	G			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTG1	54212	broad.mit.edu	37	8	51664798	51664798	+	Intron	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX31	169166	broad.mit.edu	37	8	101630017	101630017	+	Intron	SNP	G	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX32	254122	broad.mit.edu	37	11	65618622	65618622	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX33	257364	broad.mit.edu	37	15	75942210	75942210	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS1	114815	broad.mit.edu	37	10	108432552	108432552	+	Intron	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS3	22986	broad.mit.edu	37	10	106959944	106959944	+	Intron	SNP	A	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP2	6668	broad.mit.edu	37	17	46000381	46000381	+	Frame_Shift_Del	DEL	C	-	-			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG4	6676	broad.mit.edu	37	20	34207127	34207127	+	Silent	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA9	83890	broad.mit.edu	37	5	95011279	95011279	+	Missense_Mutation	SNP	C	A	A	rs142489768		TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPRY3	10251	broad.mit.edu	37	X	155003884	155003884	+	Silent	SNP	T	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158589178	158589178	+	Intron	SNP	A	G	G			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158617426	158617426	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158639464	158639464	+	Intron	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158645963	158645963	+	Silent	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTBN4	57731	broad.mit.edu	37	19	41078081	41078081	+	Silent	SNP	G	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SREBF1	6720	broad.mit.edu	37	17	17722973	17722973	+	Missense_Mutation	SNP	G	T	T	rs114001633	byFrequency;by1000genomes	TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRF	6722	broad.mit.edu	37	6	43146745	43146745	+	Intron	SNP	A	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRRM4	84530	broad.mit.edu	37	12	119552205	119552205	+	Intron	SNP	T	C	C			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSPO	23145	broad.mit.edu	37	7	149489614	149489614	+	Intron	SNP	C	A	A	rs145666510	by1000genomes	TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST8SIA6	338596	broad.mit.edu	37	10	17363044	17363044	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAC2	342667	broad.mit.edu	37	17	37373190	37373190	+	Intron	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAM	8027	broad.mit.edu	37	10	17737220	17737220	+	Missense_Mutation	SNP	T	G	G			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK24	8428	broad.mit.edu	37	13	99116093	99116093	+	Intron	SNP	G	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STON1-GTF2A1L	286749	broad.mit.edu	37	2	48848487	48848487	+	Intron	SNP	G	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYN3	8224	broad.mit.edu	37	22	33265006	33265006	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNGR4	23546	broad.mit.edu	37	19	48879049	48879049	+	Intron	SNP	A	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TACR3	6870	broad.mit.edu	37	4	104510898	104510898	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAS2R16	50833	broad.mit.edu	37	7	122635568	122635568	+	Missense_Mutation	SNP	T	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D22B	55633	broad.mit.edu	37	6	37259212	37259212	+	Intron	SNP	T	C	C			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBL2	26608	broad.mit.edu	37	7	72988684	72988684	+	Intron	SNP	G	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEC	7006	broad.mit.edu	37	4	48147476	48147476	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIAM1	7074	broad.mit.edu	37	21	32638890	32638890	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMC1	117531	broad.mit.edu	37	9	75450879	75450879	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM194A	23306	broad.mit.edu	37	12	57457866	57457866	+	Nonsense_Mutation	SNP	G	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMLHE	55217	broad.mit.edu	37	X	154736681	154736681	+	Silent	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOR1B	27348	broad.mit.edu	37	9	132565422	132565422	+	5'Flank	SNP	A	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOX4	9878	broad.mit.edu	37	14	21955827	21955827	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPM2	7169	broad.mit.edu	37	9	35685011	35685011	+	Intron	SNP	T	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM58	25893	broad.mit.edu	37	1	248027964	248027964	+	Intron	SNP	T	C	C			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM72	493829	broad.mit.edu	37	16	31234408	31234408	+	Intron	SNP	T	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIP12	9320	broad.mit.edu	37	2	230744731	230744731	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPC7	57113	broad.mit.edu	37	5	135567123	135567123	+	Silent	SNP	G	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSGA14	95681	broad.mit.edu	37	7	130044546	130044546	+	Missense_Mutation	SNP	T	G	G			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSPAN8	7103	broad.mit.edu	37	12	71533740	71533740	+	Intron	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTLL12	23170	broad.mit.edu	37	22	43570418	43570418	+	Intron	SNP	C	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179424886	179424886	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179606461	179606461	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
U2AF1	7307	broad.mit.edu	37	21	44524456	44524456	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBA6	55236	broad.mit.edu	37	4	68490009	68490009	+	Intron	SNP	T	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBA6	55236	broad.mit.edu	37	4	68531066	68531066	+	Intron	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UMODL1	89766	broad.mit.edu	37	21	43504227	43504227	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UMOD	7369	broad.mit.edu	37	16	20359462	20359462	+	Intron	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC13B	10497	broad.mit.edu	37	9	35398839	35398839	+	Intron	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC13C	440279	broad.mit.edu	37	15	54307398	54307398	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UPK3A	7380	broad.mit.edu	37	22	45682978	45682978	+	Intron	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	215940026	215940026	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216260243	216260243	+	Intron	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216420069	216420069	+	Silent	SNP	C	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216420340	216420340	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP51	158880	broad.mit.edu	37	X	55515250	55515250	+	Silent	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	38982199	38982199	+	IGR	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	65929114	65929114	+	IGR	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	39183392	39183392	+	IGR	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49053126	49053126	+	IGR	SNP	C	G	G			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	58274477	58274477	+	IGR	SNP	T	C	C			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	6149955	6149955	+	IGR	SNP	T	C	C			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	62099191	62099191	+	IGR	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	126996214	126996214	+	IGR	SNP	T	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	127396719	127396719	+	IGR	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	44054245	44054245	+	IGR	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	83159038	83159038	+	IGR	SNP	G	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20482067	20482067	+	IGR	SNP	A	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	22151916	22151916	+	IGR	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	31090025	31090025	+	IGR	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33490952	33490952	+	IGR	SNP	T	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	20624048	20624048	+	IGR	SNP	G	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	26080060	26080060	+	IGR	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	29377235	29377235	+	IGR	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	76533670	76533670	+	IGR	SNP	A	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	29542821	29542821	+	IGR	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	146586777	146586777	+	IGR	SNP	T	C	C			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149049736	149049736	+	IGR	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	211347198	211347198	+	IGR	SNP	G	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	227680721	227680721	+	IGR	SNP	C	G	G			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	229178101	229178101	+	IGR	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	249069265	249069265	+	IGR	SNP	G	C	C			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	18070903	18070903	+	IGR	SNP	G	C	C			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	24475483	24475483	+	IGR	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	128961297	128961297	+	IGR	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132580433	132580433	+	IGR	SNP	C	G	G			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	182559500	182559500	+	IGR	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	92319926	92319926	+	IGR	DEL	T	-	-			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	120025814	120025814	+	IGR	SNP	C	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	12913790	12913790	+	IGR	SNP	G	C	C			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	145542040	145542040	+	IGR	SNP	C	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	146994604	146994605	+	IGR	DNP	GG	TT	TT			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	148704182	148704182	+	IGR	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	9389118	9389118	+	IGR	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	105751750	105751750	+	IGR	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	180551955	180551955	+	IGR	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	26246827	26246827	+	IGR	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	9660900	9660900	+	IGR	SNP	T	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	53255380	53255380	+	IGR	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63033897	63033897	+	IGR	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	84613300	84613300	+	IGR	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	65635723	65635723	+	IGR	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	90559180	90559180	+	IGR	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	134313791	134313791	+	IGR	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	134772989	134772989	+	IGR	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	134774985	134774985	+	IGR	SNP	C	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	134776406	134776406	+	IGR	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	141260808	141260808	+	IGR	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	25212685	25212685	+	IGR	SNP	G	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	41958296	41958296	+	IGR	SNP	G	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	49429515	49429515	+	IGR	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VANGL2	57216	broad.mit.edu	37	1	160390262	160390262	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VASH1	22846	broad.mit.edu	37	14	77237618	77237618	+	Intron	SNP	C	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VGLL1	51442	broad.mit.edu	37	X	135631210	135631210	+	Intron	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VSIG4	11326	broad.mit.edu	37	X	65242213	65242213	+	Silent	SNP	T	C	C			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VSIG4	11326	broad.mit.edu	37	X	65252654	65252654	+	Intron	SNP	G	C	C			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWA3B	200403	broad.mit.edu	37	2	98851064	98851064	+	Intron	SNP	C	G	G			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR7	23335	broad.mit.edu	37	18	54348649	54348649	+	Intron	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XCL2	6846	broad.mit.edu	37	1	168513090	168513090	+	Intron	SNP	C	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIRP2	129446	broad.mit.edu	37	2	167992326	167992326	+	Intron	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YBX2	51087	broad.mit.edu	37	17	7193535	7193535	+	Intron	DEL	G	-	-			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3H18	124245	broad.mit.edu	37	16	88644074	88644074	+	Silent	SNP	G	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCWPW2	152098	broad.mit.edu	37	3	28454767	28454767	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF229	7772	broad.mit.edu	37	19	44932748	44932748	+	Silent	SNP	G	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF280C	55609	broad.mit.edu	37	X	129350204	129350204	+	Intron	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF285	26974	broad.mit.edu	37	19	44891556	44891556	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF365	22891	broad.mit.edu	37	10	64136074	64136074	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF496	84838	broad.mit.edu	37	1	247471885	247471885	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF673	55634	broad.mit.edu	37	X	46332839	46332839	+	3'UTR	SNP	A	G	G			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF676	163223	broad.mit.edu	37	19	22363115	22363115	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF687	57592	broad.mit.edu	37	1	151261159	151261159	+	Silent	SNP	C	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF708	7562	broad.mit.edu	37	19	21477667	21477667	+	Intron	SNP	T	C	C			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF99	7652	broad.mit.edu	37	19	22939359	22939359	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZSCAN5A	79149	broad.mit.edu	37	19	56854163	56854163	+	Intron	SNP	A	G	G			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZWINT	11130	broad.mit.edu	37	10	58117829	58117829	+	3'UTR	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22251467	22251467	+	Intron	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	23002508	23002508	+	Intron	SNP	A	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	37186025	37186025	+	5'Flank	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90260091	90260091	+	RNA	SNP	C	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	28829321	28829321	+	RNA	SNP	C	T	T			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	M	6330	6330	+	5'UTR	SNP	G	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	M	9663	9663	+	RNA	SNP	G	A	A			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
