Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	validation_method	t_ref_count	validation_status	validation_tumor_sample	t_alt_count	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
MST1P2	11209	broad.mit.edu	37	1	16976825	16976825	+	RNA	SNP	C	A	A	rs2761525	by1000genomes	TCGA-F2-6880-01A-11D-2154-08	TCGA-F2-6880-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abb64051-bd31-4193-a4ca-009b51dabe87	3ec70900-b1b6-4ed4-8be1-9c6bb1480b84	g.chr1:16976825C>A	uc010och.2	+	13		c.2546C>A			MST1P2_uc009vox.3_Non-coding_Transcript|MST1P2_uc001azm.4_Non-coding_Transcript					Homo sapiens macrophage stimulating 1 (hepatocyte growth factor-like) pseudogene 2 (MST1P2), non-coding RNA.																		taataaaattcatatttttac	0.373000														46			4		3.59834e-05	3.8982e-05	1	1	0
RGPD3	653489	broad.mit.edu	37	2	107040564	107040564	+	Missense_Mutation	SNP	C	T	T	rs55993306	by1000genomes	TCGA-F2-6880-01A-11D-2154-08	TCGA-F2-6880-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abb64051-bd31-4193-a4ca-009b51dabe87	3ec70900-b1b6-4ed4-8be1-9c6bb1480b84	g.chr2:107040564C>T	uc010ywi.1	-	19	3916	c.3859G>A	c.(3859-3861)Gag>Aag	p.E1287K		NM_001144013	NP_001137485	A6NKT7	RGPD3_HUMAN	Homo sapiens RANBP2-like and GRIP domain containing 3 (RGPD3), mRNA.	1287					intracellular transport		binding	p.E1287K(3)		breast(2)|central_nervous_system(1)|endometrium(50)|kidney(4)|lung(11)|ovary(1)|urinary_tract(2)	71						GTTGTTGACTCATCAAAGTGG	0.408000														152			9		0	0	1	0	0
FLJ43315	644316	broad.mit.edu	37	GL000211.1	86122	86122	+	RNA	SNP	G	T	T			TCGA-F2-6880-01A-11D-2154-08	TCGA-F2-6880-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abb64051-bd31-4193-a4ca-009b51dabe87	3ec70900-b1b6-4ed4-8be1-9c6bb1480b84	g.chrGL000211.1:86122G>T	uc003bnz.1	+	5		c.870G>T			FLJ43315_uc003boa.3_Non-coding_Transcript					Homo sapiens asparagine synthetase pseudogene (FLJ43315), non-coding RNA.																		GCTATGAAGAGTGCACACAGG	0.468000														18			4		0.000602214	0.000626303	1	1	0
MBTPS2	51360	broad.mit.edu	37	X	21900695	21900695	+	Silent	SNP	G	T	T	rs73195148	by1000genomes	TCGA-F2-6880-01A-11D-2154-08	TCGA-F2-6880-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abb64051-bd31-4193-a4ca-009b51dabe87	3ec70900-b1b6-4ed4-8be1-9c6bb1480b84	g.chrX:21900695G>T	uc004dae.3	+	10	1679	c.1482G>T	c.(1480-1482)ggG>ggT	p.G494G	MBTPS2_uc010nfr.3_Silent_p.G87G	NM_015884	NP_056968	O43462	MBTP2_HUMAN	Homo sapiens membrane-bound transcription factor peptidase, site 2 (MBTPS2), mRNA.	494					cholesterol metabolic process|proteolysis	Golgi membrane|integral to membrane	metal ion binding|metalloendopeptidase activity			breast(2)|endometrium(3)|large_intestine(3)|lung(13)|ovary(1)|skin(2)	24						ATCTAATAGGGTTTTTCATCT	0.453000														112			6		0.00116845	0.00116845	1	1	0
TBC1D3P2	440452	broad.mit.edu	37	17	60342311	60342311	+	RNA	SNP	G	T	T			TCGA-F2-6880-01A-11D-2154-08	TCGA-F2-6880-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abb64051-bd31-4193-a4ca-009b51dabe87	3ec70900-b1b6-4ed4-8be1-9c6bb1480b84	g.chr17:60342311G>T	uc010woz.2	-	13		c.1818C>A								Homo sapiens TBC1 domain family, member 3 pseudogene 2 (TBC1D3P2), non-coding RNA.											breast(2)|kidney(1)|lung(2)	5						AAAACGAGGAGGCGAAGCTTG	0.458000														133			17		4.74835e-14	5.61169e-14	1	1	0
FAM75A6	389730	broad.mit.edu	37	9	43627428	43627428	+	Missense_Mutation	SNP	G	A	A	rs11261835	by1000genomes	TCGA-F2-6880-01A-11D-2154-08	TCGA-F2-6880-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abb64051-bd31-4193-a4ca-009b51dabe87	3ec70900-b1b6-4ed4-8be1-9c6bb1480b84	g.chr9:43627428G>A	uc011lrb.2	-	3	1288	c.1259C>T	c.(1258-1260)cCc>cTc	p.P420L		NM_001145196	NP_001138668	Q5VVP1	F75A6_HUMAN	Homo sapiens family with sequence similarity 75, member A6 (FAM75A6), mRNA.	420						integral to membrane		p.P420L(2)		breast(2)|endometrium(3)|kidney(4)|lung(36)|prostate(4)|skin(2)|soft_tissue(1)|stomach(1)|urinary_tract(1)	54						GTGCAGAGAGGGGAGGCCCCA	0.498000														239			14		0	0	1	0	0
TBC1D3P2	440452	broad.mit.edu	37	17	60342294	60342294	+	RNA	SNP	A	C	C	rs76100965		TCGA-F2-6880-01A-11D-2154-08	TCGA-F2-6880-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abb64051-bd31-4193-a4ca-009b51dabe87	3ec70900-b1b6-4ed4-8be1-9c6bb1480b84	g.chr17:60342294A>C	uc010woz.2	-	13		c.1835T>G								Homo sapiens TBC1 domain family, member 3 pseudogene 2 (TBC1D3P2), non-coding RNA.											breast(2)|kidney(1)|lung(2)	5						TAAGTTTAACAAAAAATAAAA	0.483000														148			9		0	0	1	0	0
RPTN	126638	broad.mit.edu	37	1	152128637	152128640	+	Frame_Shift_Del	DEL	TGTC	-	-			TCGA-F2-6880-01A-11D-2154-08	TCGA-F2-6880-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abb64051-bd31-4193-a4ca-009b51dabe87	3ec70900-b1b6-4ed4-8be1-9c6bb1480b84	g.chr1:152128637_152128640delTGTC	uc001ezs.1	-	2	1000_1003	c.935_938delGACA	c.(934-939)agacaafs	p.R312fs		NM_001122965	NP_001116437	Q6XPR3	RPTN_HUMAN	Homo sapiens repetin (RPTN), mRNA.	312	Gln-rich.					proteinaceous extracellular matrix	calcium ion binding			breast(2)|central_nervous_system(1)|endometrium(14)|kidney(2)|large_intestine(1)|lung(32)|prostate(1)|skin(4)|stomach(1)|upper_aerodigestive_tract(1)	59						ACTCTGGCCTTGTCTGTCTGTCTG	0.515													---	1091	---	---	8	---					
PRDM8	56978	broad.mit.edu	37	4	81123250	81123252	+	In_Frame_Del	DEL	CAG	-	-			TCGA-F2-6880-01A-11D-2154-08	TCGA-F2-6880-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abb64051-bd31-4193-a4ca-009b51dabe87	3ec70900-b1b6-4ed4-8be1-9c6bb1480b84	g.chr4:81123250_81123252delCAG	uc010ijo.3	+	7	1473_1475	c.634_636delCAG	c.(634-636)cagdel	p.Q217del	PRDM8_uc003hmb.4_In_Frame_Del_p.Q217del|PRDM8_uc003hmc.4_In_Frame_Del_p.Q217del	NM_020226	NP_064611	Q9NQV8	PRDM8_HUMAN	Homo sapiens PR domain containing 8 (PRDM8), transcript variant 1, mRNA.	217	Gly-rich.|Poly-Gln.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(2)|central_nervous_system(1)|endometrium(1)|large_intestine(2)|lung(2)|skin(2)	10						tggcaaagaccagcagcagcagc	0.655											OREG0016246	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	---	180	---	---	7	---					
PAPD7	11044	broad.mit.edu	37	5	6755013	6755014	+	Frame_Shift_Del	DEL	AC	-	-			TCGA-F2-6880-01A-11D-2154-08	TCGA-F2-6880-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abb64051-bd31-4193-a4ca-009b51dabe87	3ec70900-b1b6-4ed4-8be1-9c6bb1480b84	g.chr5:6755013_6755014delAC	uc003jdx.1	+	12	1713_1714	c.1584_1585delAC	c.(1582-1587)aaacacfs	p.K528fs	PAPD7_uc011cmn.2_Frame_Shift_Del_p.K527fs|PAPD7_uc010itl.1_Frame_Shift_Del_p.K348fs	NM_006999	NP_001165277	Q5XG87	PAPD7_HUMAN	Homo sapiens PAP associated domain containing 7 (PAPD7), transcript variant 1, mRNA.	528					DNA replication|cell division|double-strand break repair|mitotic chromosome condensation|response to drug|sister chromatid cohesion	nucleus	DNA binding|DNA-directed DNA polymerase activity|SMC protein binding|metal ion binding			cervix(1)|endometrium(2)|large_intestine(8)|lung(10)|ovary(2)|pancreas(1)|skin(1)|stomach(1)|upper_aerodigestive_tract(1)	27						GGAGGAAAAAACACACACACAC	0.653													---	135	---	---	8	---					
EGR1	1958	broad.mit.edu	37	5	137801633	137801635	+	In_Frame_Del	DEL	CAG	-	-			TCGA-F2-6880-01A-11D-2154-08	TCGA-F2-6880-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abb64051-bd31-4193-a4ca-009b51dabe87	3ec70900-b1b6-4ed4-8be1-9c6bb1480b84	g.chr5:137801633_137801635delCAG	uc003ldb.1	+	0	453_455	c.183_185delCAG	c.(181-186)aacagc>aac	p.S67del		NM_001964	NP_001955	P18146	EGR1_HUMAN	Homo sapiens early growth response 1 (EGR1), mRNA.	67	Gly/Ser-rich.				cellular response to heparin|cellular response to mycophenolic acid|glomerular mesangial cell proliferation|interleukin-1-mediated signaling pathway|positive regulation of glomerular metanephric mesangial cell proliferation|positive regulation of transcription from RNA polymerase II promoter|regulation of protein sumoylation|transcription from RNA polymerase II promoter|type I interferon-mediated signaling pathway	cytoplasm|nucleus	histone acetyltransferase binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(1)|large_intestine(4)|ovary(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.004)|Kidney(363;0.00592)			gcggcagcaacagcagcagcagc	0.700													---	162	---	---	7	---					
PPP1R18	170954	broad.mit.edu	37	6	30653494	30653496	+	In_Frame_Del	DEL	TGC	-	-			TCGA-F2-6880-01A-11D-2154-08	TCGA-F2-6880-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abb64051-bd31-4193-a4ca-009b51dabe87	3ec70900-b1b6-4ed4-8be1-9c6bb1480b84	g.chr6:30653494_30653496delTGC	uc003nra.3	-	1	531_533	c.300_302delGCA	c.(298-303)cagcaa>caa	p.100_101QQ>Q	PPP1R18_uc003nrb.4_In_Frame_Del_p.100_101QQ>Q	NM_001134870	NP_597728	Q6NYC8	PHTNS_HUMAN	Homo sapiens protein phosphatase 1, regulatory subunit 18 (PPP1R18), transcript variant 2, mRNA.	100	Poly-Gln.					cytoplasm|cytoskeleton	actin binding	p.Q100Q(1)									CCGTtgttgttgctgctgctgct	0.650													---	201	---	---	7	---					
ZAN	7455	broad.mit.edu	37	7	100385562	100385596	+	Frame_Shift_Del	DEL	GCTTCAGCTACCGCTTGCAAGGCCGCATGACCTAT	-	-	rs68029369	by1000genomes	TCGA-F2-6880-01A-11D-2154-08	TCGA-F2-6880-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abb64051-bd31-4193-a4ca-009b51dabe87	3ec70900-b1b6-4ed4-8be1-9c6bb1480b84	g.chr7:100385562_100385596delGCTTCAGCTACCGCTTGCAAGGCCGCATGACCTAT	uc003uwj.3	+	38	7193_7227	c.7028_7062delGCTTCAGCTACCGCTTGCAAGGCCGCATGACCTAT	c.(7027-7062)ggcttcagctaccgcttgcaaggccgcatgacctatfs	p.G2343fs	ZAN_uc003uwk.3_Frame_Shift_Del_p.G2343fs|ZAN_uc003uwl.3_Non-coding_Transcript|ZAN_uc010lhh.3_Non-coding_Transcript|ZAN_uc010lhi.3_Non-coding_Transcript|ZAN_uc011kke.2_Frame_Shift_Del_p.G394fs	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	Homo sapiens zonadhesin (ZAN), transcript variant 3, mRNA.	2344	VWFD 4.				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				NS(2)|breast(3)|central_nervous_system(3)|endometrium(21)|kidney(6)|large_intestine(18)|lung(60)|ovary(4)|pancreas(3)|prostate(5)|skin(8)|stomach(3)|upper_aerodigestive_tract(3)	139	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			ACATTTGACGGCTTCAGCTACCGCTTGCAAGGCCGCATGACCTATGTTCTGATCA	0.583													---	71	---	---	10	---					
HRCT1	646962	broad.mit.edu	37	9	35906348	35906350	+	In_Frame_Del	DEL	CTG	-	-			TCGA-F2-6880-01A-11D-2154-08	TCGA-F2-6880-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abb64051-bd31-4193-a4ca-009b51dabe87	3ec70900-b1b6-4ed4-8be1-9c6bb1480b84	g.chr9:35906348_35906350delCTG	uc003zyr.1	+	0	160_162	c.64_66delCTG	c.(64-66)ctgdel	p.L28del		NM_001039792	NP_001034881	Q6UXD1	HRCT1_HUMAN	Homo sapiens histidine rich carboxyl terminus 1 (HRCT1), mRNA.	28						integral to membrane				NS(1)|haematopoietic_and_lymphoid_tissue(1)|lung(1)|prostate(1)	4						TGTGGCGGTCctgctgctgctgc	0.670													---	99	---	---	7	---					
ZMIZ1	57178	broad.mit.edu	37	10	81070787	81070789	+	In_Frame_Del	DEL	CTC	-	-			TCGA-F2-6880-01A-11D-2154-08	TCGA-F2-6880-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abb64051-bd31-4193-a4ca-009b51dabe87	3ec70900-b1b6-4ed4-8be1-9c6bb1480b84	g.chr10:81070787_81070789delCTC	uc001kaf.2	+	23	3514_3516	c.2942_2944delCTC	c.(2941-2946)gctcct>gct	p.P986del	ZMIZ1_uc001kag.2_In_Frame_Del_p.P862del|ZMIZ1_uc010qlq.1_Intron	NM_020338	NP_065071	Q9ULJ6	ZMIZ1_HUMAN	Homo sapiens zinc finger, MIZ-type containing 1 (ZMIZ1), mRNA.	986	Pro-rich.				transcription, DNA-dependent	cytoplasm|nuclear speck	zinc ion binding			breast(1)|central_nervous_system(1)|endometrium(2)|kidney(1)|large_intestine(5)|lung(14)|ovary(2)|prostate(3)|skin(1)	30	all_cancers(46;0.0292)|Breast(12;8.52e-05)|all_epithelial(25;0.000854)|Prostate(51;0.00985)		Epithelial(14;0.00256)|all cancers(16;0.00726)|Colorectal(32;0.229)			CACAGTGGGGCTCCTCCTCCTCC	0.635													---	412	---	---	15	---					
SFSWAP	6433	broad.mit.edu	37	12	132281734	132281736	+	In_Frame_Del	DEL	AGA	-	-			TCGA-F2-6880-01A-11D-2154-08	TCGA-F2-6880-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abb64051-bd31-4193-a4ca-009b51dabe87	3ec70900-b1b6-4ed4-8be1-9c6bb1480b84	g.chr12:132281734_132281736delAGA	uc001uja.1	+	15	2686_2688	c.2546_2548delAGA	c.(2545-2550)gagaag>gag	p.K853del	SFSWAP_uc010tbn.1_In_Frame_Del_p.K905del	NM_004592	NP_004583	Q12872	SFSWA_HUMAN	Homo sapiens splicing factor, suppressor of white-apricot homolog (Drosophila) (SFSWAP), mRNA.	853	Arg/Ser-rich (RS domain).|Poly-Lys.				mRNA splice site selection|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	RNA binding|protein binding			endometrium(4)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(9)|lung(8)|ovary(1)|skin(2)	25						AGTCCCCACGAGAAGAAGAAGAA	0.606													---	444	---	---	10	---					
EBPL	84650	broad.mit.edu	37	13	50235208	50235209	+	Frame_Shift_Ins	INS	-	A	A			TCGA-F2-6880-01A-11D-2154-08	TCGA-F2-6880-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abb64051-bd31-4193-a4ca-009b51dabe87	3ec70900-b1b6-4ed4-8be1-9c6bb1480b84	g.chr13:50235208_50235209insA	uc001vdg.3	-	3	579_580	c.516_517insT	c.(514-519)tttaacfs	p.F172fs	EBPL_uc001vdh.3_Non-coding_Transcript|EBPL_uc001vdi.3_3'UTR	NM_032565	NP_115954	Q9BY08	EBPL_HUMAN	Homo sapiens emopamil binding protein-like (EBPL), mRNA.	172					sterol metabolic process	endoplasmic reticulum membrane|integral to membrane	cholestenol delta-isomerase activity	p.F172fs*7(2)		endometrium(8)|kidney(6)|lung(3)|ovary(2)|upper_aerodigestive_tract(1)|urinary_tract(1)	21		Lung NSC(96;0.000468)|Breast(56;0.0011)|Prostate(109;0.00243)|Hepatocellular(98;0.0556)|Glioma(44;0.236)		GBM - Glioblastoma multiforme(99;2.06e-09)		CACACACCGTTAAAAAAAAACA	0.480													---	98	---	---	7	---					
C14orf49	161176	broad.mit.edu	37	14	95921888	95921890	+	In_Frame_Del	DEL	CTC	-	-			TCGA-F2-6880-01A-11D-2154-08	TCGA-F2-6880-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abb64051-bd31-4193-a4ca-009b51dabe87	3ec70900-b1b6-4ed4-8be1-9c6bb1480b84	g.chr14:95921888_95921890delCTC	uc001yei.4	-	4	976_978	c.961_963delGAG	c.(961-963)gagdel	p.E321del	C14orf49_uc010avi.3_In_Frame_Del_p.E321del|C14orf49_uc001yej.1_In_Frame_Del_p.E321del	NM_152592	NP_689805	Q6ZMZ3	SYNE3_HUMAN	Homo sapiens chromosome 14 open reading frame 49 (C14orf49), mRNA.	321					cytoskeletal anchoring at nuclear membrane	SUN-KASH complex|integral to membrane|nuclear outer membrane	actin binding			breast(3)|central_nervous_system(1)|endometrium(2)|large_intestine(6)|lung(27)|prostate(5)|skin(4)|stomach(1)|upper_aerodigestive_tract(1)	50		all_cancers(154;0.0937)		COAD - Colon adenocarcinoma(157;0.245)		CCCGCAGCCGCTCCTCCTCCTCC	0.616													---	343	---	---	7	---					
SRP14	6727	broad.mit.edu	37	15	40328597	40328599	+	In_Frame_Del	DEL	TGC	-	-			TCGA-F2-6880-01A-11D-2154-08	TCGA-F2-6880-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abb64051-bd31-4193-a4ca-009b51dabe87	3ec70900-b1b6-4ed4-8be1-9c6bb1480b84	g.chr15:40328597_40328599delTGC	uc001zkq.2	-	4	418_420	c.346_348delGCA	c.(346-348)gcadel	p.A116del	SRP14_uc001zkr.2_3'UTR|LOC100131089_uc021sjc.1_5'Flank|LOC100131089_uc021sjd.1_5'Flank|LOC100131089_uc021sje.1_5'Flank|LOC100131089_uc001zks.2_5'Flank	NM_003134	NP_003125	P37108	SRP14_HUMAN	Homo sapiens signal recognition particle 14kDa (homologous Alu RNA binding protein) (SRP14), mRNA.	116	Ala/Thr-rich.				SRP-dependent cotranslational protein targeting to membrane|negative regulation of translational elongation|response to drug	cytosol|signal recognition particle, endoplasmic reticulum targeting	7S RNA binding|endoplasmic reticulum signal peptide binding|protein binding			endometrium(1)|skin(1)|upper_aerodigestive_tract(1)	3		all_cancers(109;7.56e-18)|all_epithelial(112;4.02e-15)|Lung NSC(122;5.63e-11)|all_lung(180;1.4e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;1.84e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0505)		ctgcggcaggtgctgctgctgct	0.478													---	146	---	---	7	---					
EDC4	23644	broad.mit.edu	37	16	67913767	67913769	+	In_Frame_Del	DEL	CAG	-	-			TCGA-F2-6880-01A-11D-2154-08	TCGA-F2-6880-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abb64051-bd31-4193-a4ca-009b51dabe87	3ec70900-b1b6-4ed4-8be1-9c6bb1480b84	g.chr16:67913767_67913769delCAG	uc002eur.3	+	15	2075_2077	c.1836_1838delCAG	c.(1834-1839)cccagc>ccc	p.S617del	EDC4_uc010cer.3_In_Frame_Del_p.S236del|EDC4_uc010vkg.1_In_Frame_Del_p.S549del|EDC4_uc002eus.3_In_Frame_Del_p.S347del|EDC4_uc002eut.1_5'Flank	NM_014329	NP_055144	Q6P2E9	EDC4_HUMAN	Homo sapiens enhancer of mRNA decapping 4 (EDC4), mRNA.	617	Ser-rich.				exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay	cytoplasmic mRNA processing body|cytosol|nucleus	protein binding			breast(3)|central_nervous_system(2)|cervix(1)|endometrium(6)|haematopoietic_and_lymphoid_tissue(2)|kidney(3)|large_intestine(4)|lung(8)|ovary(4)|skin(2)|upper_aerodigestive_tract(4)|urinary_tract(2)	41		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0042)|Epithelial(162;0.0185)|all cancers(182;0.121)		CTGCCTCTCCcagcagcagcagc	0.611													---	207	---	---	7	---					
KRTAP4-1	85285	broad.mit.edu	37	17	39340796	39340852	+	Splice_Site	DEL	CGGCAGCAGCTGGACATACCACAGCTGGGGTGGCAGGTGGTCTGACAGCAGAGTGGG	-	-	rs483929	by1000genomes	TCGA-F2-6880-01A-11D-2154-08	TCGA-F2-6880-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abb64051-bd31-4193-a4ca-009b51dabe87	3ec70900-b1b6-4ed4-8be1-9c6bb1480b84	g.chr17:39340796_39340852delCGGCAGCAGCTGGACATACCACAGCTGGGGTGGCAGGTGGTCTGACAGCAGAGTGGG	uc002hwe.4	-	2	287	c.246_splice	c.e2-1	p.S82_splice		NM_033060	NP_149049	Q9BYQ7	KRA41_HUMAN	Homo sapiens keratin associated protein 4-1 (KRTAP4-1), mRNA.	101	18 X 5 AA repeats of C-C-[GRQC]-[SPT]- [VSTL].					keratin filament		p.H90_C108delHPSCGMSSCCRPLCCQTTC(2)|p.H94_C112delHPSCGMSSCCRPLCCQTTC(2)		kidney(1)|large_intestine(1)|lung(1)|prostate(1)|upper_aerodigestive_tract(1)	5		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000449)			ACAGAGTGGACGGCAGCAGCTGGACATACCACAGCTGGGGTGGCAGGTGGTCTGACAGCAGAGTGGGCGGCAGCAGC	0.646													---	200	---	---	8	---					
CXXC1	30827	broad.mit.edu	37	18	47812275	47812277	+	In_Frame_Del	DEL	CTG	-	-			TCGA-F2-6880-01A-11D-2154-08	TCGA-F2-6880-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abb64051-bd31-4193-a4ca-009b51dabe87	3ec70900-b1b6-4ed4-8be1-9c6bb1480b84	g.chr18:47812275_47812277delCTG	uc002leq.4	-	4	1214_1216	c.481_483delCAG	c.(481-483)cagdel	p.Q161del	CXXC1_uc002lep.4_In_Frame_Del_p.Q18del|CXXC1_uc002ler.4_In_Frame_Del_p.Q161del|CXXC1_uc010doy.3_In_Frame_Del_p.Q161del	NM_014593	NP_055408	Q9P0U4	CXXC1_HUMAN	Homo sapiens CXXC finger protein 1 (CXXC1), transcript variant 2, mRNA.	161					histone H3-K4 methylation|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	Set1C/COMPASS complex|nuclear speck	protein binding|unmethylated CpG binding|zinc ion binding			autonomic_ganglia(1)|endometrium(5)|kidney(1)|large_intestine(3)|lung(8)|ovary(1)|prostate(1)|skin(2)|upper_aerodigestive_tract(2)	24						ACCGTTTGATctgctgctgctgc	0.557													---	126	---	---	7	---					
CIC	23152	broad.mit.edu	37	19	42795823	42795824	+	Frame_Shift_Ins	INS	-	C	C			TCGA-F2-6880-01A-11D-2154-08	TCGA-F2-6880-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abb64051-bd31-4193-a4ca-009b51dabe87	3ec70900-b1b6-4ed4-8be1-9c6bb1480b84	g.chr19:42795823_42795824insC	uc002otf.1	+	10	2852_2853	c.2812_2813insC	c.(2812-2814)gccfs	p.A938fs		NM_015125	NP_055940	Q96RK0	CIC_HUMAN	Homo sapiens capicua homolog (Drosophila) (CIC), mRNA.	938	Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding			autonomic_ganglia(1)|breast(5)|central_nervous_system(32)|endometrium(10)|kidney(2)|large_intestine(7)|lung(9)|ovary(7)|prostate(3)|skin(3)|upper_aerodigestive_tract(1)|urinary_tract(2)	82		Prostate(69;0.00682)				GGGTGGAGGGGCCGGCCAGCCA	0.693			"""Mis, F, S"""		oligodendroglioma								---	378	---	---	7	---					
ZNF579	163033	broad.mit.edu	37	19	56089908	56089909	+	In_Frame_Ins	INS	-	CCG	CCG	rs141478862	by1000genomes	TCGA-F2-6880-01A-11D-2154-08	TCGA-F2-6880-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abb64051-bd31-4193-a4ca-009b51dabe87	3ec70900-b1b6-4ed4-8be1-9c6bb1480b84	g.chr19:56089908_56089909insCCG	uc002qlh.3	-	1	1150_1151	c.1097_1098insCGG	c.(1096-1098)ggg>ggCGGg	p.366_366G>GG	ZNF579_uc021vby.1_In_Frame_Ins_p.366_366G>GG	NM_152600	NP_689813	Q8NAF0	ZN579_HUMAN	Homo sapiens zinc finger protein 579 (ZNF579), mRNA.	366	Gly-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding	p.G366_Q367insG(2)		endometrium(1)|lung(5)|prostate(1)|skin(1)|upper_aerodigestive_tract(1)	9			BRCA - Breast invasive adenocarcinoma(297;0.18)	GBM - Glioblastoma multiforme(193;0.106)		CTCCGTTCTGCCCTTCTCCCCC	0.748													---	7	---	---	6	---					
NUDT11	55190	broad.mit.edu	37	X	51239296	51239309	+	Translation_Start_Site	DEL	TCCTCGAGGCAGCC	-	-	rs78182391		TCGA-F2-6880-01A-11D-2154-08	TCGA-F2-6880-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abb64051-bd31-4193-a4ca-009b51dabe87	3ec70900-b1b6-4ed4-8be1-9c6bb1480b84	g.chrX:51239296_51239309delTCCTCGAGGCAGCC	uc010njt.3	-	0						NM_018159	NP_060629	Q96G61	NUD11_HUMAN	Homo sapiens nudix (nucleoside diphosphate linked moiety X)-type motif 11 (NUDT11), mRNA.							cytoplasm	diphosphoinositol-polyphosphate diphosphatase activity|metal ion binding	p.?(5)		breast(1)|central_nervous_system(1)|endometrium(1)|large_intestine(1)|lung(2)|prostate(1)|upper_aerodigestive_tract(2)	9	Ovarian(276;0.236)					TTGCACTTCATCCTCGAGGCAGCCTCCTCGAGGC	0.692										HNSCC(48;0.14)			---	17	---	---	12	---					
