Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
ESPN	83715	broad.mit.edu	36	1	6423026	6423026	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	6423026	6423026	ESPN	1	A	A	G	10
SMPDL3B	27293	broad.mit.edu	36	1	28153489	28153489	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	28153489	28153489	SMPDL3B	1	G	G	T	43
GNL2	29889	broad.mit.edu	36	1	37812874	37812874	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	37812874	37812874	GNL2	1	G	G	A	41
CDC7	8317	broad.mit.edu	36	1	91762452	91762452	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	91762452	91762452	CDC7	1	G	G	C	33
ITGA10	8515	broad.mit.edu	36	1	144245273	144245273	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10			G	A	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	144245273	144245273	ITGA10	1	G	G	A	40
FAM63A	55793	broad.mit.edu	36	1	149237234	149237234	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	149237234	149237234	FAM63A	1	G	G	A	35
APCS	325	broad.mit.edu	36	1	157824849	157824849	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	157824849	157824849	APCS	1	G	G	A	47
ARHGAP21	57584	broad.mit.edu	36	10	24924689	24924689	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	24924689	24924689	ARHGAP21	10	G	G	C	35
CCDC6	8030	broad.mit.edu	36	10	61244452	61244452	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10			A	G	A	A	Unknown	Valid	Somatic	x	x	454_PCR_WGA			x	Broad	Missense_Mutation	SNP	61244452	61244452	CCDC6	10	A	A	G	11
CDK1		broad.mit.edu	36	10	62215450	62215450	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10			G	C	G	G	Unknown	Valid	Somatic	x	x	454_PCR_WGA			x	Broad	Missense_Mutation	SNP	62215450	62215450	CDK1	10	G	G	C	41
SUPV3L1	6832	broad.mit.edu	36	10	70621417	70621417	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	70621417	70621417	SUPV3L1	10	G	G	T	43
PRF1	5551	broad.mit.edu	36	10	72027815	72027815	+	Nonstop_Mutation	SNP	T	T	A	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonstop_Mutation	SNP	72027815	72027815	PRF1	10	T	T	A	54
SYNPO2L	79933	broad.mit.edu	36	10	75077114	75077114	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	75077114	75077114	SYNPO2L	10	G	G	C	39
ZNF503	84858	broad.mit.edu	36	10	76828582	76828582	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	76828582	76828582	ZNF503	10	T	T	G	58
COX15	1355	broad.mit.edu	36	10	101477240	101477240	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10			C	T	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	101477240	101477240	COX15	10	C	C	T	32
INSC	387755	broad.mit.edu	36	11	15090605	15090605	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	15090605	15090605	INSC	11	C	C	T	24
SDHAF2	54949	broad.mit.edu	36	11	60961684	60961684	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	60961684	60961684	SDHAF2	11	G	G	T	48
LRP5	4041	broad.mit.edu	36	11	67910716	67910716	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	67910716	67910716	LRP5	11	C	C	G	24
KIRREL3	84623	broad.mit.edu	36	11	125821979	125821979	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	125821979	125821979	KIRREL3	11	A	A	T	8
TAS2R50	259296	broad.mit.edu	36	12	11030693	11030693	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	11030693	11030693	TAS2R50	12	G	G	C	33
EEA1	8411	broad.mit.edu	36	12	91716817	91716817	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	91716817	91716817	EEA1	12	T	T	C	64
CUX2	23316	broad.mit.edu	36	12	110260538	110260538	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	110260538	110260538	CUX2	12	C	C	T	23
KNTC1	9735	broad.mit.edu	36	12	121623710	121623710	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	121623710	121623710	KNTC1	12	C	C	A	32
FAM123A	219287	broad.mit.edu	36	13	24643687	24643687	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	24643687	24643687	FAM123A	13	C	C	A	22
ATP11A	23250	broad.mit.edu	36	13	112521659	112521659	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	112521659	112521659	ATP11A	13	A	A	G	11
HECTD1	25831	broad.mit.edu	36	14	30653011	30653011	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	30653011	30653011	HECTD1	14	G	G	C	34
EIF2S1	1965	broad.mit.edu	36	14	66901240	66901240	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	66901240	66901240	EIF2S1	14	G	G	T	46
CCDC88C	440193	broad.mit.edu	36	14	90825370	90825370	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	90825370	90825370	CCDC88C	14	G	G	A	40
DISP2	85455	broad.mit.edu	36	15	38448827	38448827	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	38448827	38448827	DISP2	15	C	C	A	27
VPS39	23339	broad.mit.edu	36	15	40267316	40267316	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	40267316	40267316	VPS39	15	T	T	C	50
DUOX1	53905	broad.mit.edu	36	15	43231933	43231933	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	43231933	43231933	DUOX1	15	C	C	G	29
DNAJA4	55466	broad.mit.edu	36	15	76344187	76344187	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	76344187	76344187	DNAJA4	15	C	C	A	17
NR2F2	7026	broad.mit.edu	36	15	94676663	94676663	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	94676663	94676663	NR2F2	15	A	A	T	11
MSLNL	401827	broad.mit.edu	36	16	770434	770434	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	770434	770434	MSLNL	16	G	G	T	39
PRSS21	10942	broad.mit.edu	36	16	2811384	2811384	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	2811384	2811384	PRSS21	16	C	C	G	22
DNAH3	55567	broad.mit.edu	36	16	20906662	20906662	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	20906662	20906662	DNAH3	16	T	T	C	50
SLC5A11	115584	broad.mit.edu	36	16	24809691	24809691	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	24809691	24809691	SLC5A11	16	G	G	T	44
CES3	23491	broad.mit.edu	36	16	65558184	65558184	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	65558184	65558184	CES3	16	A	A	G	3
TXNL4B	54957	broad.mit.edu	36	16	70678142	70678142	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	70678142	70678142	TXNL4B	16	C	C	A	29
ANKRD11	29123	broad.mit.edu	36	16	87875898	87875898	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	87875898	87875898	ANKRD11	16	G	G	C	41
CHMP1A	5119	broad.mit.edu	36	16	88239867	88239867	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	88239867	88239867	CHMP1A	16	C	C	G	26
TP53	7157	broad.mit.edu	36	17	7518284	7518284	+	Missense_Mutation	SNP	G	G	A	rs28934573	Unknown	TCGA-04-1367-01	TCGA-04-1367-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	7518284	7518284	TP53	17	G	G	A	41
NF1	4763	broad.mit.edu	36	17	26514375	26514375	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10			C	T	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Nonsense_Mutation	SNP	26514375	26514375	NF1	17	C	C	T	17
CIC	23152	broad.mit.edu	36	19	47482805	47482805	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	47482805	47482805	CIC	19	G	G	C	47
SIGLEC11	114132	broad.mit.edu	36	19	55155842	55155842	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	55155842	55155842	SIGLEC11	19	G	G	C	47
PEG3	5178	broad.mit.edu	36	19	62024923	62024923	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	62024923	62024923	PEG3	19	G	G	A	38
NPHP1	4867	broad.mit.edu	36	2	110279507	110279507	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	110279507	110279507	NPHP1	2	A	A	C	16
CYTIP	9595	broad.mit.edu	36	2	157980773	157980773	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	157980773	157980773	CYTIP	2	T	T	A	54
TANC1	85461	broad.mit.edu	36	2	159743390	159743390	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	159743390	159743390	TANC1	2	G	G	A	46
FASTKD1	79675	broad.mit.edu	36	2	170102011	170102011	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10			C	T	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Silent	SNP	170102011	170102011	FASTKD1	2	C	C	T	23
HOXD10	3236	broad.mit.edu	36	2	176690444	176690444	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	176690444	176690444	HOXD10	2	G	G	A	36
IRS1	3667	broad.mit.edu	36	2	227368238	227368238	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	227368238	227368238	IRS1	2	C	C	A	22
COL6A3	1293	broad.mit.edu	36	2	237952151	237952151	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	237952151	237952151	COL6A3	2	C	C	A	32
CLIC6	54102	broad.mit.edu	36	21	35002123	35002123	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10			A	T	A	A	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	35002123	35002123	CLIC6	21	A	A	T	10
DSCAM	1826	broad.mit.edu	36	21	40379537	40379537	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	40379537	40379537	DSCAM	21	T	T	A	50
ITGB2	3689	broad.mit.edu	36	21	45143505	45143505	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	45143505	45143505	ITGB2	21	C	C	G	30
ISX	91464	broad.mit.edu	36	22	33811585	33811585	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	33811585	33811585	ISX	22	C	C	A	26
GGA1	26088	broad.mit.edu	36	22	36351895	36351895	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	36351895	36351895	GGA1	22	G	G	A	48
ATXN10	25814	broad.mit.edu	36	22	44467611	44467611	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	44467611	44467611	ATXN10	22	C	C	G	32
CELSR1	9620	broad.mit.edu	36	22	45168795	45168795	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	45168795	45168795	CELSR1	22	A	A	C	6
CELSR3	1951	broad.mit.edu	36	3	48672381	48672381	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	48672381	48672381	CELSR3	3	C	C	A	21
SLC38A3	10991	broad.mit.edu	36	3	50232512	50232512	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	50232512	50232512	SLC38A3	3	C	C	A	24
EPHA3	2042	broad.mit.edu	36	3	89539205	89539205	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10			T	A	T	T	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	89539205	89539205	EPHA3	3	T	T	A	52
KIAA2018	205717	broad.mit.edu	36	3	114862666	114862666	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	114862666	114862666	KIAA2018	3	G	G	C	42
ACAD11	84129	broad.mit.edu	36	3	133861273	133861273	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	133861273	133861273	ACAD11	3	C	C	A	25
LRRC31	79782	broad.mit.edu	36	3	171061159	171061159	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	171061159	171061159	LRRC31	3	T	T	C	52
DLG1	1739	broad.mit.edu	36	3	198276997	198276997	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	198276997	198276997	DLG1	3	T	T	C	63
C4ORF50	389197	broad.mit.edu	36	4	6026355	6026355	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	6026355	6026355	C4ORF50	4	G	G	T	46
ANP32C	23520	broad.mit.edu	36	4	165337738	165337738	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	165337738	165337738	ANP32C	4	C	C	T	24
IQGAP2	10788	broad.mit.edu	36	5	75902200	75902200	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	75902200	75902200	IQGAP2	5	C	C	T	21
ADAM19	8728	broad.mit.edu	36	5	156865338	156865338	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	156865338	156865338	ADAM19	5	G	G	T	48
TNXB	7148	broad.mit.edu	36	6	32155002	32155002	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	32155002	32155002	TNXB	6	C	C	T	27
B3GAT2	135152	broad.mit.edu	36	6	71628310	71628310	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10			G	C	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	71628310	71628310	B3GAT2	6	G	G	C	33
KIAA0644	9865	broad.mit.edu	36	7	28963656	28963656	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	28963656	28963656	KIAA0644	7	A	A	G	3
SCRN1	9805	broad.mit.edu	36	7	29946841	29946841	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	29946841	29946841	SCRN1	7	T	T	A	55
HERPUD2	64224	broad.mit.edu	36	7	35641357	35641357	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	35641357	35641357	HERPUD2	7	C	C	T	31
MUC17	140453	broad.mit.edu	36	7	100469992	100469992	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	100469992	100469992	MUC17	7	G	G	A	40
CUX1	1523	broad.mit.edu	36	7	101346125	101346125	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	101346125	101346125	CUX1	7	A	A	T	12
CDHR3	222256	broad.mit.edu	36	7	105442888	105442888	+	Nonsense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	105442888	105442888	CDHR3	7	C	C	G	20
NRCAM	4897	broad.mit.edu	36	7	107612214	107612214	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10			T	C	T	T	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	107612214	107612214	NRCAM	7	T	T	C	59
RP1	6101	broad.mit.edu	36	8	55704383	55704383	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	55704383	55704383	RP1	8	G	G	T	37
MYBL1	4603	broad.mit.edu	36	8	67639598	67639598	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	67639598	67639598	MYBL1	8	T	T	C	62
FAM83A	84985	broad.mit.edu	36	8	124264603	124264603	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	124264603	124264603	FAM83A	8	C	C	T	26
FER1L6	654463	broad.mit.edu	36	8	125176440	125176440	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	125176440	125176440	FER1L6	8	G	G	T	41
SECISBP2	79048	broad.mit.edu	36	9	91130309	91130309	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	91130309	91130309	SECISBP2	9	G	G	C	36
IKBKAP	8518	broad.mit.edu	36	9	110710486	110710486	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	110710486	110710486	IKBKAP	9	G	G	T	44
FKBP15	23307	broad.mit.edu	36	9	114989906	114989906	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	114989906	114989906	FKBP15	9	G	G	C	43
MAN1B1	11253	broad.mit.edu	36	9	139103163	139103163	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	139103163	139103163	MAN1B1	9	A	A	T	9
ARL13A	392509	broad.mit.edu	36	X	100129873	100129873	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	100129873	100129873	ARL13A	23	G	G	C	33
F8	2157	broad.mit.edu	36	X	153810116	153810116	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10			G	A	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Nonsense_Mutation	SNP	153810116	153810116	F8	23	G	G	A	40
SEC16B	89866	broad.mit.edu	36	1	176194718	176194728	+	Frame_Shift_Del	DEL	CTTATGTACAT	-	CTTATGTACAT	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	Broad	Frame_Shift_Del	DEL	176194718	176194728	SEC16B	1	CTTATGTACAT	-	CTTATGTACAT	24
DHX9	1660	broad.mit.edu	36	1	181089175	181089189	+	Splice_Site_Del	DEL	CGGTAAGGCCAGCAC	-	CGGTAAGGCCAGCAC	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	Broad	Splice_Site_Del	DEL	181089175	181089189	DHX9	1	CGGTAAGGCCAGCAC	-	CGGTAAGGCCAGCAC	27
HEPHL1	341208	broad.mit.edu	36	11	93458971	93458978	+	Frame_Shift_Del	DEL	CCACAACA	-	CCACAACA	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	Broad	Frame_Shift_Del	DEL	93458971	93458978	HEPHL1	11	CCACAACA	-	CCACAACA	26
KRT82	3888	broad.mit.edu	36	12	51083809	51083821	+	Frame_Shift_Del	DEL	ACGCGGTCCCCGG	-	ACGCGGTCCCCGG	novel	Unknown	TCGA-04-1367-01	TCGA-04-1367-10							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	Broad	Frame_Shift_Del	DEL	51083809	51083821	KRT82	12	ACGCGGTCCCCGG	-	ACGCGGTCCCCGG	6
