Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
A2ML1	144568	broad.mit.edu	37	12	8994049	8994049	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABAT	18	broad.mit.edu	37	16	8857885	8857885	+	Intron	SNP	A	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA13	154664	broad.mit.edu	37	7	48559904	48559904	+	Intron	SNP	G	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA5	23461	broad.mit.edu	37	17	67302912	67302912	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA6	23460	broad.mit.edu	37	17	67132263	67132263	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA9	10350	broad.mit.edu	37	17	67041216	67041216	+	Intron	SNP	T	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB5	340273	broad.mit.edu	37	7	20725491	20725491	+	Intron	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC5	10057	broad.mit.edu	37	3	183669353	183669353	+	Silent	SNP	C	T	T	rs139563504	by1000genomes	TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABRA	137735	broad.mit.edu	37	8	107782551	107782551	+	5'Flank	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACAA2	10449	broad.mit.edu	37	18	47340515	47340515	+	5'Flank	SNP	C	A	A	rs146918794	by1000genomes	TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSM2A	123876	broad.mit.edu	37	16	20494692	20494692	+	Intron	SNP	G	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSS1	84532	broad.mit.edu	37	20	24990221	24990221	+	Intron	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM11	4185	broad.mit.edu	37	17	42850577	42850577	+	Intron	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM19	8728	broad.mit.edu	37	5	156920037	156920037	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM23	8745	broad.mit.edu	37	2	207438027	207438027	+	Intron	SNP	T	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM23	8745	broad.mit.edu	37	2	207457502	207457502	+	Intron	SNP	T	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM29	11086	broad.mit.edu	37	4	175899297	175899297	+	3'UTR	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106787385	106787385	+	Intron	SNP	T	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS14	140766	broad.mit.edu	37	10	72491972	72491972	+	Intron	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS14	140766	broad.mit.edu	37	10	72491985	72491985	+	Intron	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS16	170690	broad.mit.edu	37	5	5235286	5235286	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS20	80070	broad.mit.edu	37	12	43846183	43846183	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS9	56999	broad.mit.edu	37	3	64600955	64600955	+	Intron	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF3	3899	broad.mit.edu	37	2	100209812	100209812	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGBL4	84871	broad.mit.edu	37	1	50312005	50312005	+	Intron	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHCY	191	broad.mit.edu	37	20	32880131	32880131	+	Intron	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AJAP1	55966	broad.mit.edu	37	1	4832175	4832175	+	Intron	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALAD	210	broad.mit.edu	37	9	116152888	116152888	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH1A3	220	broad.mit.edu	37	15	101447433	101447433	+	Silent	SNP	T	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALKBH1	8846	broad.mit.edu	37	14	78174335	78174335	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALKBH5	54890	broad.mit.edu	37	17	18087755	18087755	+	Silent	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALPK3	57538	broad.mit.edu	37	15	85401849	85401849	+	Intron	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALPP	250	broad.mit.edu	37	2	233244348	233244348	+	Silent	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMPD2	271	broad.mit.edu	37	1	110172892	110172892	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD13D	338692	broad.mit.edu	37	11	67058967	67058967	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD36	375248	broad.mit.edu	37	2	97851256	97851256	+	Intron	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD42	338699	broad.mit.edu	37	11	82938904	82938904	+	Silent	SNP	T	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKZF1	55139	broad.mit.edu	37	2	220095980	220095980	+	Intron	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AOC3	8639	broad.mit.edu	37	17	41004468	41004468	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP3B2	8120	broad.mit.edu	37	15	83350261	83350261	+	Silent	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP4M1	9179	broad.mit.edu	37	7	99701403	99701403	+	Intron	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APCDD1	147495	broad.mit.edu	37	18	10468528	10468528	+	Missense_Mutation	SNP	A	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOBEC3F	200316	broad.mit.edu	37	22	39445311	39445311	+	Intron	SNP	T	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARAP1	116985	broad.mit.edu	37	11	72410139	72410139	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARFIP1	27236	broad.mit.edu	37	4	153750861	153750861	+	Nonsense_Mutation	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF12	23365	broad.mit.edu	37	11	120352136	120352136	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF19	128272	broad.mit.edu	37	1	16532021	16532021	+	Intron	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF2	9181	broad.mit.edu	37	1	155920588	155920588	+	Intron	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF7	8874	broad.mit.edu	37	13	111930028	111930028	+	Intron	SNP	A	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARL9	132946	broad.mit.edu	37	4	57377383	57377384	+	5'UTR	DNP	GG	TT	TT			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARPP21	10777	broad.mit.edu	37	3	35729481	35729481	+	Intron	SNP	T	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASCL3	56676	broad.mit.edu	37	11	8959544	8959544	+	Silent	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	176918355	176918355	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN2	23245	broad.mit.edu	37	9	119188076	119188076	+	3'UTR	SNP	A	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN2	23245	broad.mit.edu	37	9	119568148	119568148	+	Intron	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATG16L2	89849	broad.mit.edu	37	11	72554622	72554622	+	3'UTR	SNP	A	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2A3	489	broad.mit.edu	37	17	3828757	3828757	+	Intron	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2A3	489	broad.mit.edu	37	17	3833795	3833795	+	Intron	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP5H	10476	broad.mit.edu	37	17	73038509	73038509	+	Intron	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP6V0D2	245972	broad.mit.edu	37	8	87111177	87111177	+	5'UTR	SNP	T	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP8B1	5205	broad.mit.edu	37	18	55342315	55342315	+	Intron	SNP	T	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP8B4	79895	broad.mit.edu	37	15	50154292	50154292	+	Intron	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAI3	577	broad.mit.edu	37	6	69759195	69759195	+	Missense_Mutation	SNP	G	T	T	rs112866971		TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAT3	7917	broad.mit.edu	37	6	31607272	31607272	+	Intron	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCAS1	8537	broad.mit.edu	37	20	52583307	52583307	+	Intron	SNP	C	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BDH1	622	broad.mit.edu	37	3	197241022	197241022	+	Intron	SNP	A	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BDP1	55814	broad.mit.edu	37	5	70812006	70812006	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BNC2	54796	broad.mit.edu	37	9	16552886	16552886	+	Intron	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRAP	8315	broad.mit.edu	37	12	112116863	112116863	+	Intron	SNP	C	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRAP	8315	broad.mit.edu	37	12	112119674	112119674	+	Intron	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRD8	10902	broad.mit.edu	37	5	137500094	137500094	+	Silent	SNP	A	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTN3A2	11118	broad.mit.edu	37	6	26373430	26373430	+	Intron	SNP	T	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BYSL	705	broad.mit.edu	37	6	41900001	41900001	+	Intron	SNP	A	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C13orf26	122046	broad.mit.edu	37	13	31530895	31530895	+	Intron	SNP	A	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf27	123591	broad.mit.edu	37	15	76463279	76463279	+	Intron	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf51	196968	broad.mit.edu	37	15	100340293	100340293	+	RNA	SNP	C	G	G	rs142617387	by1000genomes	TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C18orf25	147339	broad.mit.edu	37	18	43796093	43796093	+	Silent	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf61	56006	broad.mit.edu	37	19	44251711	44251711	+	Intron	SNP	G	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1QTNF3	114899	broad.mit.edu	37	5	34043079	34043079	+	Intron	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf14	81626	broad.mit.edu	37	1	182924621	182924621	+	5'Flank	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf175	374977	broad.mit.edu	37	1	55119167	55119167	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf103	24141	broad.mit.edu	37	20	9510440	9510440	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf118	140711	broad.mit.edu	37	20	35506114	35506114	+	Intron	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf86	51057	broad.mit.edu	37	2	63816016	63816016	+	5'Flank	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf58	205428	broad.mit.edu	37	3	143704283	143704283	+	Intron	SNP	C	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf40	401137	broad.mit.edu	37	4	71019981	71019981	+	Intron	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5	727	broad.mit.edu	37	9	123778413	123778413	+	Intron	SNP	T	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf136	221545	broad.mit.edu	37	6	30617664	30617664	+	Silent	SNP	C	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf138	442213	broad.mit.edu	37	6	47976507	47976507	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf15	29113	broad.mit.edu	37	6	31079232	31079232	+	Missense_Mutation	SNP	G	T	T	rs150278073	byFrequency	TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7	730	broad.mit.edu	37	5	40937557	40937557	+	Intron	SNP	T	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1A	773	broad.mit.edu	37	19	13410132	13410132	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1C	775	broad.mit.edu	37	12	2224599	2224599	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181707463	181707463	+	Intron	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1S	779	broad.mit.edu	37	1	201019910	201019910	+	Intron	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CADM3	57863	broad.mit.edu	37	1	159166576	159166576	+	Intron	SNP	C	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALY	50632	broad.mit.edu	37	10	135140380	135140380	+	Splice_Site	SNP	A	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMK4	814	broad.mit.edu	37	5	110818340	110818340	+	Intron	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMKK1	84254	broad.mit.edu	37	17	3776861	3776861	+	Intron	SNP	G	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMTA1	23261	broad.mit.edu	37	1	7811208	7811208	+	Intron	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASK	8573	broad.mit.edu	37	X	41414907	41414907	+	Intron	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASP1	834	broad.mit.edu	37	11	104937555	104937555	+	Intron	SNP	T	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASP2	835	broad.mit.edu	37	7	142988654	142988654	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASP8AP2	9994	broad.mit.edu	37	6	90572786	90572786	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC33	80125	broad.mit.edu	37	15	74558912	74558912	+	Intron	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC54	84692	broad.mit.edu	37	3	107097226	107097226	+	Missense_Mutation	SNP	T	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC71	64925	broad.mit.edu	37	3	49200414	49200414	+	Frame_Shift_Del	DEL	G	-	-			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCKBR	887	broad.mit.edu	37	11	6291761	6291761	+	Intron	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCL18	6362	broad.mit.edu	37	17	34398440	34398440	+	3'UTR	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCT8L2	150160	broad.mit.edu	37	22	17072655	17072655	+	Silent	SNP	A	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD2AP	23607	broad.mit.edu	37	6	47567080	47567080	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD36	948	broad.mit.edu	37	7	80276105	80276105	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH10	1008	broad.mit.edu	37	5	24510016	24510016	+	Intron	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH2	1000	broad.mit.edu	37	18	25572694	25572694	+	Missense_Mutation	SNP	A	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH7	1005	broad.mit.edu	37	18	63492010	63492010	+	Silent	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK5RAP3	80279	broad.mit.edu	37	17	46052626	46052626	+	Nonsense_Mutation	SNP	A	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK7	1022	broad.mit.edu	37	5	68531237	68531237	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDKL5	6792	broad.mit.edu	37	X	18668587	18668587	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDKN1B	1027	broad.mit.edu	37	12	12870888	12870888	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP68	23177	broad.mit.edu	37	2	65299464	65299470	+	Frame_Shift_Del	DEL	GAGCGCA	-	-	rs141435576		TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CGB	1082	broad.mit.edu	37	19	49535639	49535639	+	Intron	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD2	1106	broad.mit.edu	37	15	93522313	93522313	+	Intron	SNP	G	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD7	55636	broad.mit.edu	37	8	61769148	61769149	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRM3	1131	broad.mit.edu	37	1	240072434	240072434	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRND	1144	broad.mit.edu	37	2	233392136	233392136	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CIT	11113	broad.mit.edu	37	12	120270671	120270671	+	Intron	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CKMT1A	548596	broad.mit.edu	37	15	43990112	43990112	+	Intron	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLASP2	23122	broad.mit.edu	37	3	33618828	33618828	+	Intron	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCN1	1180	broad.mit.edu	37	7	143039535	143039535	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCN1	1180	broad.mit.edu	37	7	143039586	143039586	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLDN18	51208	broad.mit.edu	37	3	137717810	137717810	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLIP2	7461	broad.mit.edu	37	7	73753444	73753444	+	Intron	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLK2	1196	broad.mit.edu	37	1	155237671	155237672	+	Intron	DNP	AG	TA	TA			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLSTN2	64084	broad.mit.edu	37	3	140285094	140285094	+	Nonstop_Mutation	SNP	A	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CMYA5	202333	broad.mit.edu	37	5	79029481	79029481	+	Silent	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGA2	1260	broad.mit.edu	37	X	150908126	150908126	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNKSR1	10256	broad.mit.edu	37	1	26510756	26510756	+	Silent	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP5	129684	broad.mit.edu	37	2	125367481	125367481	+	Silent	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A2	1302	broad.mit.edu	37	6	33137743	33137743	+	Intron	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL14A1	7373	broad.mit.edu	37	8	121240845	121240845	+	Intron	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139691882	139691882	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139697353	139697353	+	Intron	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A1	1282	broad.mit.edu	37	13	110804880	110804880	+	Intron	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A6	1288	broad.mit.edu	37	X	107457580	107457580	+	Intron	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A1	1289	broad.mit.edu	37	9	137681070	137681070	+	Intron	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A2	1290	broad.mit.edu	37	2	189914102	189914102	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A3	50509	broad.mit.edu	37	19	10102485	10102485	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CORO7	79585	broad.mit.edu	37	16	4408437	4408437	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPXM2	119587	broad.mit.edu	37	10	125557674	125557674	+	Intron	SNP	T	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRB1	23418	broad.mit.edu	37	1	197332894	197332894	+	Intron	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CROCCL1	84809	broad.mit.edu	37	1	16969479	16969479	+	Intron	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRYBA4	1413	broad.mit.edu	37	22	27021578	27021578	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSF2RA	1438	broad.mit.edu	37	X	1409524	1409524	+	Intron	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	3165024	3165024	+	Intron	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	33985220	33985220	+	Silent	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	114326757	114326757	+	Intron	SNP	A	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSN1S1	1446	broad.mit.edu	37	4	70804920	70804920	+	Silent	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA2	1496	broad.mit.edu	37	2	80772928	80772928	+	Intron	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA3	29119	broad.mit.edu	37	10	69366816	69366816	+	Intron	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTSL2	1515	broad.mit.edu	37	9	99797169	99797170	+	Intron	DNP	CA	AT	AT			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTTN	2017	broad.mit.edu	37	11	70263174	70263174	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTTN	2017	broad.mit.edu	37	11	70280996	70280996	+	Intron	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CWH43	80157	broad.mit.edu	37	4	49018911	49018911	+	Intron	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf1	9142	broad.mit.edu	37	X	144909198	144909198	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYB5A	1528	broad.mit.edu	37	18	71958967	71958967	+	Intron	SNP	T	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP11B1	1584	broad.mit.edu	37	8	143956360	143956360	+	Intron	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2A13	1553	broad.mit.edu	37	19	41600880	41600880	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2B6	1555	broad.mit.edu	37	19	41510205	41510205	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4B1	1580	broad.mit.edu	37	1	47282729	47282730	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4F12	66002	broad.mit.edu	37	19	15791346	15791346	+	Intron	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4F8	11283	broad.mit.edu	37	19	15726466	15726466	+	Silent	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP7A1	1581	broad.mit.edu	37	8	59412672	59412672	+	5'UTR	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAB1	1600	broad.mit.edu	37	1	57489264	57489264	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DACH1	1602	broad.mit.edu	37	13	72147097	72147097	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DBN1	1627	broad.mit.edu	37	5	176894217	176894217	+	Intron	SNP	G	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCHS2	54798	broad.mit.edu	37	4	155161691	155161691	+	Nonsense_Mutation	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCHS2	54798	broad.mit.edu	37	4	155226292	155226293	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCST1	149095	broad.mit.edu	37	1	155020758	155020758	+	Intron	SNP	C	A	A	rs115837705	by1000genomes	TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDHD2	23259	broad.mit.edu	37	8	38103232	38103232	+	Intron	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDI2	84301	broad.mit.edu	37	1	15960224	15960224	+	Intron	SNP	A	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX56	54606	broad.mit.edu	37	7	44611349	44611349	+	Intron	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND2A	27147	broad.mit.edu	37	7	140273808	140273808	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND2C	163259	broad.mit.edu	37	1	115130323	115130323	+	Intron	SNP	A	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKI	9162	broad.mit.edu	37	7	137269996	137269996	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKK	139189	broad.mit.edu	37	X	50134350	50134350	+	Intron	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX57	90957	broad.mit.edu	37	2	39050219	39050219	+	Silent	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX8	1659	broad.mit.edu	37	17	41570854	41570854	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DKK4	27121	broad.mit.edu	37	8	42232264	42232264	+	Intron	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG2	1740	broad.mit.edu	37	11	84028205	84028205	+	Intron	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLGAP3	58512	broad.mit.edu	37	1	35365726	35365726	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH10	196385	broad.mit.edu	37	12	124258688	124258688	+	Intron	SNP	T	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH11	8701	broad.mit.edu	37	7	21788230	21788230	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH11	8701	broad.mit.edu	37	7	21789974	21789974	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH7	56171	broad.mit.edu	37	2	196834820	196834820	+	Splice_Site	SNP	T	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH8	1769	broad.mit.edu	37	6	38889056	38889056	+	Intron	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH8	1769	broad.mit.edu	37	6	38976690	38976690	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC13	23317	broad.mit.edu	37	3	132219569	132219569	+	Intron	SNP	T	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC7	7266	broad.mit.edu	37	17	40169226	40169226	+	Intron	SNP	T	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP10	57628	broad.mit.edu	37	2	116447482	116447482	+	Silent	SNP	C	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPYSL5	56896	broad.mit.edu	37	2	27165081	27165081	+	Intron	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSCAM	1826	broad.mit.edu	37	21	41648050	41648050	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DST	667	broad.mit.edu	37	6	56328479	56328479	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DST	667	broad.mit.edu	37	6	56507224	56507224	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUSP15	128853	broad.mit.edu	37	20	30436639	30436639	+	Silent	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DVL2	1856	broad.mit.edu	37	17	7134075	7134075	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYSF	8291	broad.mit.edu	37	2	71797246	71797246	+	Intron	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDA	1896	broad.mit.edu	37	X	69253205	69253205	+	Intron	SNP	T	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDEM2	55741	broad.mit.edu	37	20	33703271	33703271	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDEM2	55741	broad.mit.edu	37	20	33711807	33711807	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EEA1	8411	broad.mit.edu	37	12	93258595	93258595	+	Intron	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EEF1A1P9	441032	broad.mit.edu	37	4	106406637	106406637	+	Silent	SNP	T	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFCAB6	64800	broad.mit.edu	37	22	44073794	44073794	+	Intron	SNP	T	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFEMP2	30008	broad.mit.edu	37	11	65637871	65637871	+	Intron	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFHC1	114327	broad.mit.edu	37	6	52344532	52344532	+	Silent	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EHMT1	79813	broad.mit.edu	37	9	140674015	140674015	+	Intron	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF3F	8665	broad.mit.edu	37	11	8017408	8017408	+	Intron	SNP	G	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF4E3	317649	broad.mit.edu	37	3	71748936	71748936	+	Intron	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF4H	7458	broad.mit.edu	37	7	73609261	73609261	+	Intron	SNP	G	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPP3	5169	broad.mit.edu	37	6	132006714	132006715	+	Intron	INS	-	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA2	1969	broad.mit.edu	37	1	16464843	16464843	+	Silent	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA3	2042	broad.mit.edu	37	3	89478378	89478378	+	Intron	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA6	285220	broad.mit.edu	37	3	97167440	97167440	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHB1	2047	broad.mit.edu	37	3	134873028	134873028	+	Missense_Mutation	SNP	T	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHB6	2051	broad.mit.edu	37	7	142568375	142568375	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESYT2	57488	broad.mit.edu	37	7	158534100	158534100	+	Intron	SNP	C	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EVI5	7813	broad.mit.edu	37	1	93070821	93070821	+	Intron	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYS	346007	broad.mit.edu	37	6	66044840	66044840	+	Intron	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F2	2147	broad.mit.edu	37	11	46748237	46748237	+	Intron	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM101A	144347	broad.mit.edu	37	12	124798726	124798726	+	Intron	SNP	T	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM115A	9747	broad.mit.edu	37	7	143573331	143573331	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM131B	9715	broad.mit.edu	37	7	143053910	143053910	+	Silent	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM131B	9715	broad.mit.edu	37	7	143056061	143056061	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139263164	139263164	+	Silent	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM171A1	221061	broad.mit.edu	37	10	15254716	15254716	+	3'UTR	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM175B	23172	broad.mit.edu	37	10	126490204	126490204	+	5'Flank	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM47B	170062	broad.mit.edu	37	X	34961142	34961142	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM60A	58516	broad.mit.edu	37	12	31435625	31435626	+	3'UTR	DNP	CC	AA	AA			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM73A	374986	broad.mit.edu	37	1	78340618	78340618	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM83F	113828	broad.mit.edu	37	22	40417816	40417816	+	Silent	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM90A1	55138	broad.mit.edu	37	12	8376463	8376463	+	Intron	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FANCA	2175	broad.mit.edu	37	16	89818580	89818580	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FANCF	2188	broad.mit.edu	37	11	22646877	22646877	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FANCI	55215	broad.mit.edu	37	15	89833463	89833463	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAR2	55711	broad.mit.edu	37	12	29423409	29423409	+	Silent	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAR2	55711	broad.mit.edu	37	12	29423423	29423423	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FATE1	89885	broad.mit.edu	37	X	150891346	150891346	+	3'UTR	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO33	254170	broad.mit.edu	37	14	39870751	39870751	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCHO1	23149	broad.mit.edu	37	19	17895113	17895113	+	Intron	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FEM1B	10116	broad.mit.edu	37	15	68581900	68581900	+	Intron	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGF23	8074	broad.mit.edu	37	12	4481880	4481880	+	Intron	SNP	G	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152275261	152275286	+	Frame_Shift_Del	DEL	TTATTAATATACGTTGCATAATACCT	-	-	rs117440780	byFrequency;by1000genomes	TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152279843	152279843	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152282747	152282747	+	Missense_Mutation	SNP	T	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLI1	2313	broad.mit.edu	37	11	128680825	128680825	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLNC	2318	broad.mit.edu	37	7	128478674	128478674	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLNC	2318	broad.mit.edu	37	7	128482833	128482833	+	Intron	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMNL1	752	broad.mit.edu	37	17	43323120	43323120	+	Intron	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMR1NB	158521	broad.mit.edu	37	X	147106432	147106432	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRAS1	80144	broad.mit.edu	37	4	79385788	79385788	+	Intron	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMPD2	143162	broad.mit.edu	37	10	49430250	49430250	+	Intron	SNP	T	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSD2	123722	broad.mit.edu	37	15	83451753	83451753	+	Missense_Mutation	SNP	T	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FTSJD1	55783	broad.mit.edu	37	16	71319391	71319391	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA3	2556	broad.mit.edu	37	X	151424261	151424261	+	Silent	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRG3	2567	broad.mit.edu	37	15	27772536	27772537	+	Intron	DNP	CG	GT	GT			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT13	114805	broad.mit.edu	37	2	155098507	155098507	+	Intron	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT14	79623	broad.mit.edu	37	2	31360856	31360856	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT2	2590	broad.mit.edu	37	1	230385028	230385028	+	Intron	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNTL2	117248	broad.mit.edu	37	3	16254188	16254188	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GATA3	2625	broad.mit.edu	37	10	8115980	8115980	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GATAD2A	54815	broad.mit.edu	37	19	19603056	19603056	+	Intron	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBP4	115361	broad.mit.edu	37	1	89662923	89662923	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBP5	115362	broad.mit.edu	37	1	89735060	89735060	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCKR	2646	broad.mit.edu	37	2	27745266	27745266	+	Intron	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCM2	9247	broad.mit.edu	37	6	10877358	10877358	+	Intron	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCN1L1	10985	broad.mit.edu	37	12	120592761	120592761	+	Intron	SNP	A	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GDF6	392255	broad.mit.edu	37	8	97172982	97172982	+	Translation_Start_Site	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GHR	2690	broad.mit.edu	37	5	42629317	42629317	+	Intron	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GHR	2690	broad.mit.edu	37	5	42700125	42700125	+	Intron	SNP	A	G	G	rs140356468	by1000genomes	TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIMAP7	168537	broad.mit.edu	37	7	150210471	150210471	+	5'Flank	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLI3	2737	broad.mit.edu	37	7	42007443	42007443	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLT1D1	144423	broad.mit.edu	37	12	129360768	129360768	+	Intron	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GMPS	8833	broad.mit.edu	37	3	155649598	155649598	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNB3	2784	broad.mit.edu	37	12	6950713	6950713	+	Intron	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGA6L5	374650	broad.mit.edu	37	15	85055998	85055998	+	RNA	SNP	T	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLIM4	27333	broad.mit.edu	37	3	167761282	167761282	+	Silent	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOT2	2806	broad.mit.edu	37	16	58742247	58742247	+	Intron	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR111	222611	broad.mit.edu	37	6	47646627	47646627	+	Intron	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR112	139378	broad.mit.edu	37	X	135430553	135430553	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR142	350383	broad.mit.edu	37	17	72368080	72368080	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR149	344758	broad.mit.edu	37	3	154070094	154070094	+	Intron	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR162	27239	broad.mit.edu	37	12	6935352	6935352	+	Intron	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPRC5C	55890	broad.mit.edu	37	17	72437119	72437120	+	Intron	INS	-	T	T	rs141781708		TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPRIN3	285513	broad.mit.edu	37	4	90169061	90169061	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRAMD1C	54762	broad.mit.edu	37	3	113563429	113563429	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRB14	2888	broad.mit.edu	37	2	165364995	165364995	+	Silent	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GREB1	9687	broad.mit.edu	37	2	11755152	11755152	+	Intron	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GREB1	9687	broad.mit.edu	37	2	11775662	11775663	+	Intron	DNP	GG	TT	TT			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRID1	2894	broad.mit.edu	37	10	87406923	87406923	+	Intron	SNP	T	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSS	2937	broad.mit.edu	37	20	33523482	33523482	+	Intron	SNP	T	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTF2F1	2962	broad.mit.edu	37	19	6380768	6380768	+	Intron	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTF3C2	2976	broad.mit.edu	37	2	27558976	27558977	+	Intron	DNP	CC	AG	AG			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCA2B	2981	broad.mit.edu	37	1	42619102	42619102	+	Translation_Start_Site	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
H1FOO	132243	broad.mit.edu	37	3	129268253	129268253	+	Intron	SNP	A	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HACL1	26061	broad.mit.edu	37	3	15642847	15642847	+	Intron	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC7	51564	broad.mit.edu	37	12	48188624	48188624	+	Silent	SNP	C	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HELB	92797	broad.mit.edu	37	12	66698906	66698906	+	Missense_Mutation	SNP	A	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HES4	57801	broad.mit.edu	37	1	935138	935138	+	Silent	SNP	G	C	C	rs140166926	byFrequency	TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HGF	3082	broad.mit.edu	37	7	81335168	81335168	+	Intron	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HGF	3082	broad.mit.edu	37	7	81346644	81346644	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HGF	3082	broad.mit.edu	37	7	81372293	81372293	+	Intron	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIATL2	84278	broad.mit.edu	37	9	99711865	99711865	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLA-DRB5	3127	broad.mit.edu	37	6	32523304	32523304	+	Intron	SNP	T	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXB3	3213	broad.mit.edu	37	17	46627838	46627838	+	Missense_Mutation	SNP	T	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXC9	3225	broad.mit.edu	37	12	54394171	54394171	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HP1BP3	50809	broad.mit.edu	37	1	21071463	21071463	+	Nonsense_Mutation	SNP	T	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HRAS	3265	broad.mit.edu	37	11	533874	533874	+	Missense_Mutation	SNP	T	A	A	rs121913233		TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTA	283902	broad.mit.edu	37	16	73126791	73126791	+	RNA	SNP	C	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFNA14	3448	broad.mit.edu	37	9	21209348	21209348	+	Intron	SNP	T	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFNA16	3449	broad.mit.edu	37	9	21216810	21216810	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFNG	3458	broad.mit.edu	37	12	68549249	68549249	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGLL1	3543	broad.mit.edu	37	22	23917154	23917154	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF9B	22997	broad.mit.edu	37	11	133789866	133789866	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IKZF1	10320	broad.mit.edu	37	7	50444256	50444256	+	Silent	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL16	3603	broad.mit.edu	37	15	81578201	81578201	+	Intron	SNP	T	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL4R	3566	broad.mit.edu	37	16	27356218	27356218	+	Nonsense_Mutation	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INPP4B	8821	broad.mit.edu	37	4	143130292	143130292	+	Intron	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INSRR	3645	broad.mit.edu	37	1	156810764	156810764	+	Nonsense_Mutation	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IPO7	10527	broad.mit.edu	37	11	9457805	9457805	+	Intron	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQCE	23288	broad.mit.edu	37	7	2618035	2618035	+	Intron	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQGAP2	10788	broad.mit.edu	37	5	75923139	75923139	+	Intron	DEL	G	-	-			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQSEC1	9922	broad.mit.edu	37	3	12957349	12957349	+	Intron	SNP	T	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRAK3	11213	broad.mit.edu	37	12	66620648	66620648	+	Intron	SNP	T	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA6	3655	broad.mit.edu	37	2	173354047	173354047	+	Intron	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAL	3683	broad.mit.edu	37	16	30509284	30509284	+	Intron	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAM	3684	broad.mit.edu	37	16	31288340	31288340	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAX	3687	broad.mit.edu	37	16	31382585	31382585	+	Intron	DEL	G	-	-			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH5	80760	broad.mit.edu	37	10	7611609	7611609	+	Intron	SNP	T	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITSN1	6453	broad.mit.edu	37	21	35140006	35140006	+	Intron	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KBTBD12	166348	broad.mit.edu	37	3	127702828	127702829	+	Intron	DNP	GC	AA	AA			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNA10	3744	broad.mit.edu	37	1	111060705	111060705	+	Silent	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH5	27133	broad.mit.edu	37	14	63453936	63453936	+	Intron	SNP	T	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH8	131096	broad.mit.edu	37	3	19575003	19575003	+	Silent	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNIP3	30818	broad.mit.edu	37	2	96041065	96041065	+	Intron	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNMB3	27094	broad.mit.edu	37	3	178984520	178984520	+	5'UTR	SNP	T	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNT2	343450	broad.mit.edu	37	1	196204946	196204946	+	Intron	SNP	T	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM2A	22992	broad.mit.edu	37	11	67021866	67021866	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM4B	23030	broad.mit.edu	37	19	5032782	5032782	+	Intron	SNP	G	T	T	rs75012091	byFrequency;by1000genomes	TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM4C	23081	broad.mit.edu	37	9	6887885	6887885	+	Intron	SNP	T	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM4DL	390245	broad.mit.edu	37	11	94759362	94759362	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM5A	5927	broad.mit.edu	37	12	498227	498227	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM5C	8242	broad.mit.edu	37	X	53239923	53239923	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDR	3791	broad.mit.edu	37	4	55980997	55980997	+	Intron	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0125	9834	broad.mit.edu	37	14	106361473	106361473	+	Intron	SNP	T	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0146	23514	broad.mit.edu	37	8	48309166	48309166	+	Silent	SNP	A	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0319	9856	broad.mit.edu	37	6	24595994	24595994	+	Intron	SNP	T	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0355	9710	broad.mit.edu	37	19	34838704	34838704	+	Intron	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0754	643314	broad.mit.edu	37	1	39878353	39878353	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1755	85449	broad.mit.edu	37	20	36868870	36868870	+	Intron	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF1A	547	broad.mit.edu	37	2	241700155	241700155	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF3C	3797	broad.mit.edu	37	2	26152411	26152411	+	Intron	SNP	C	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF4B	285643	broad.mit.edu	37	5	154393371	154393371	+	5'UTR	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF6	221458	broad.mit.edu	37	6	39545820	39545820	+	Intron	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF9	64147	broad.mit.edu	37	3	47305841	47305841	+	Splice_Site	SNP	C	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIFC1	3833	broad.mit.edu	37	6	33372021	33372021	+	Intron	SNP	T	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR3DL1	3811	broad.mit.edu	37	19	55377868	55377868	+	Silent	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLK6	5653	broad.mit.edu	37	19	51470295	51470295	+	Intron	SNP	C	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLRC3	3823	broad.mit.edu	37	12	10587093	10587093	+	Missense_Mutation	SNP	G	A	A	rs143264024	byFrequency	TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT2	3849	broad.mit.edu	37	12	53038773	53038773	+	3'UTR	SNP	G	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA1	284217	broad.mit.edu	37	18	6966226	6966226	+	Frame_Shift_Del	DEL	C	-	-			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA1	284217	broad.mit.edu	37	18	6971968	6971968	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA1	284217	broad.mit.edu	37	18	7080193	7080193	+	Intron	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMP3	27074	broad.mit.edu	37	3	182870212	182870212	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LARS	51520	broad.mit.edu	37	5	145531365	145531365	+	Intron	SNP	T	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAT	27040	broad.mit.edu	37	16	29000895	29000895	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCK	3932	broad.mit.edu	37	1	32741968	32741969	+	Frame_Shift_Ins	INS	-	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LEPREL1	55214	broad.mit.edu	37	3	189706961	189706961	+	Intron	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGR5	8549	broad.mit.edu	37	12	71960644	71960644	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LLGL1	3996	broad.mit.edu	37	17	18133340	18133340	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LLGL2	3993	broad.mit.edu	37	17	73559551	73559551	+	Intron	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMNB2	84823	broad.mit.edu	37	19	2438179	2438179	+	Silent	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100101938	100101938	broad.mit.edu	37	13	19879648	19879648	+	Intron	SNP	C	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100130331	100130331	broad.mit.edu	37	1	238090507	238090507	+	RNA	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC645752	645752	broad.mit.edu	37	15	78217264	78217264	+	Intron	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC653113	653113	broad.mit.edu	37	12	8387922	8387922	+	Intron	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	23010901	23010901	+	Intron	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN2	23266	broad.mit.edu	37	1	82445498	82445498	+	Intron	SNP	A	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPIN1	23175	broad.mit.edu	37	2	11913804	11913805	+	Frame_Shift_Ins	INS	-	TT	TT			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRBA	987	broad.mit.edu	37	4	151520061	151520061	+	Intron	SNP	T	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRCH3	84859	broad.mit.edu	37	3	197598238	197598238	+	Nonsense_Mutation	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141115470	141115471	+	Intron	DNP	CC	AA	AA			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141806919	141806919	+	Intron	SNP	T	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP2	4036	broad.mit.edu	37	2	170101331	170101331	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC14B	389257	broad.mit.edu	37	5	194952	194952	+	Silent	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC47	57470	broad.mit.edu	37	1	3712374	3712374	+	Intron	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LY75	4065	broad.mit.edu	37	2	160663639	160663639	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGI3	260425	broad.mit.edu	37	1	114128317	114128317	+	Intron	SNP	A	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAG	4099	broad.mit.edu	37	19	35793624	35793624	+	Intron	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP2	4133	broad.mit.edu	37	2	210561775	210561775	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP4K1	11184	broad.mit.edu	37	19	39105150	39105150	+	Intron	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPK13	5603	broad.mit.edu	37	6	36107043	36107043	+	Intron	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPK1	5594	broad.mit.edu	37	22	22160348	22160348	+	Intron	SNP	T	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPK8IP3	23162	broad.mit.edu	37	16	1797083	1797083	+	Silent	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH10	162333	broad.mit.edu	37	17	60821966	60821966	+	Intron	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH4	57574	broad.mit.edu	37	2	217124507	217124507	+	Intron	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAST1	22983	broad.mit.edu	37	19	12958030	12958030	+	Intron	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCM2	4171	broad.mit.edu	37	3	127337904	127337904	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDGA2	161357	broad.mit.edu	37	14	47389131	47389131	+	Intron	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDGA2	161357	broad.mit.edu	37	14	47426714	47426714	+	Nonsense_Mutation	SNP	A	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDM4	4194	broad.mit.edu	37	1	204501201	204501201	+	Intron	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED12	9968	broad.mit.edu	37	X	70360812	70360812	+	Intron	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEIS1	4211	broad.mit.edu	37	2	66796217	66796217	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEOX2	4223	broad.mit.edu	37	7	15666576	15666576	+	Intron	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MESDC1	59274	broad.mit.edu	37	15	81295659	81295659	+	Silent	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
METT10D	79066	broad.mit.edu	37	17	2371202	2371202	+	Intron	SNP	T	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MFSD3	113655	broad.mit.edu	37	8	145735969	145735969	+	Intron	DEL	C	-	-			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGA	23269	broad.mit.edu	37	15	42000108	42000108	+	Intron	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGEA5	10724	broad.mit.edu	37	10	103560073	103560073	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MICB	4277	broad.mit.edu	37	6	31477729	31477729	+	3'UTR	SNP	C	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIER1	57708	broad.mit.edu	37	1	67442326	67442326	+	Frame_Shift_Del	DEL	A	-	-			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MKKS	8195	broad.mit.edu	37	20	10393066	10393066	+	Intron	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP9	4318	broad.mit.edu	37	20	44639923	44639923	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOGAT3	346606	broad.mit.edu	37	7	100843503	100843503	+	Intron	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A12	54860	broad.mit.edu	37	11	60268654	60268654	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSH6	2956	broad.mit.edu	37	2	48018307	48018307	+	Intron	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTL5	9633	broad.mit.edu	37	11	68506070	68506070	+	Intron	SNP	T	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTM1	4534	broad.mit.edu	37	X	149783137	149783137	+	Nonsense_Mutation	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTUS2	23281	broad.mit.edu	37	13	30061951	30061951	+	Intron	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9000041	9000041	+	Intron	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9038556	9038556	+	Intron	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9056168	9056168	+	Intron	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9067228	9067228	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9073450	9073450	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC4	4585	broad.mit.edu	37	3	195505433	195505433	+	Intron	SNP	T	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC5B	727897	broad.mit.edu	37	11	1213453	1213453	+	Intron	SNP	T	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUT	4594	broad.mit.edu	37	6	49412454	49412454	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUT	4594	broad.mit.edu	37	6	49425722	49425722	+	Silent	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH6	4624	broad.mit.edu	37	14	23861608	23861608	+	Intron	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO3A	53904	broad.mit.edu	37	10	26443669	26443669	+	Intron	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO7A	4647	broad.mit.edu	37	11	76888588	76888588	+	Intron	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO7B	4648	broad.mit.edu	37	2	128338275	128338275	+	Intron	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NADSYN1	55191	broad.mit.edu	37	11	71194086	71194086	+	Intron	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NANS	54187	broad.mit.edu	37	9	100839261	100839261	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAPRT1	93100	broad.mit.edu	37	8	144657383	144657383	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV3	89795	broad.mit.edu	37	12	78415666	78415666	+	Intron	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBAS	51594	broad.mit.edu	37	2	15608700	15608700	+	Intron	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCKAP5	344148	broad.mit.edu	37	2	133721313	133721313	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCOA1	8648	broad.mit.edu	37	2	24920627	24920627	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCOA3	8202	broad.mit.edu	37	20	46271154	46271154	+	Intron	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCRNA00182	100302692	broad.mit.edu	37	X	73382037	73382038	+	Intron	DNP	CC	AA	AA			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NECAB1	64168	broad.mit.edu	37	8	91937876	91937876	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL1	4745	broad.mit.edu	37	11	20948800	20948800	+	Intron	SNP	T	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEU4	129807	broad.mit.edu	37	2	242757908	242757908	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFYC	4802	broad.mit.edu	37	1	41236556	41236556	+	3'UTR	SNP	A	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NGF	4803	broad.mit.edu	37	1	115829306	115829306	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NHEDC1	150159	broad.mit.edu	37	4	103870474	103870474	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NID2	22795	broad.mit.edu	37	14	52534674	52534674	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLGN4Y	22829	broad.mit.edu	37	Y	16941629	16941629	+	Silent	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP6	171389	broad.mit.edu	37	11	278724	278724	+	Intron	SNP	C	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP6	171389	broad.mit.edu	37	11	280839	280839	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOTCH2	4853	broad.mit.edu	37	1	120464237	120464237	+	Intron	SNP	T	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOTCH4	4855	broad.mit.edu	37	6	32190540	32190540	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPAT	4863	broad.mit.edu	37	11	108043482	108043482	+	Silent	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPTX2	4885	broad.mit.edu	37	7	98254413	98254413	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRAP	4892	broad.mit.edu	37	10	115374527	115374527	+	Intron	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRCAM	4897	broad.mit.edu	37	7	107878195	107878195	+	Splice_Site	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN1	9378	broad.mit.edu	37	2	50724853	50724853	+	Splice_Site	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN1	9378	broad.mit.edu	37	2	50765556	50765556	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NSF	4905	broad.mit.edu	37	17	44795249	44795249	+	Intron	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NSMCE1	197370	broad.mit.edu	37	16	27246710	27246710	+	Intron	SNP	C	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NT5C1A	84618	broad.mit.edu	37	1	40137419	40137419	+	Intron	SNP	T	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTN1	9423	broad.mit.edu	37	17	9083206	9083206	+	Silent	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP155	9631	broad.mit.edu	37	5	37341367	37341367	+	Intron	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXF4	55999	broad.mit.edu	37	X	101818493	101818493	+	Intron	SNP	G	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OAS3	4940	broad.mit.edu	37	12	113382446	113382446	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ2	57451	broad.mit.edu	37	5	167545349	167545349	+	Silent	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPCML	4978	broad.mit.edu	37	11	132307139	132307139	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10A2	341276	broad.mit.edu	37	11	6891431	6891431	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10J3	441911	broad.mit.edu	37	1	159283979	159283980	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10Q1	219960	broad.mit.edu	37	11	57996185	57996185	+	Missense_Mutation	SNP	T	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10S1	219873	broad.mit.edu	37	11	123847563	123847563	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1L3	26735	broad.mit.edu	37	9	125437724	125437724	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1M1	125963	broad.mit.edu	37	19	9204125	9204125	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2C3	81472	broad.mit.edu	37	1	247695135	247695135	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2J2	26707	broad.mit.edu	37	6	29142178	29142178	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2Z1	284383	broad.mit.edu	37	19	8841574	8841574	+	Silent	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C12	283093	broad.mit.edu	37	11	50003265	50003265	+	Missense_Mutation	SNP	C	T	T	rs141386333		TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C15	81309	broad.mit.edu	37	11	55321872	55321872	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51E2	81285	broad.mit.edu	37	11	4703243	4703243	+	Silent	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5D13	390142	broad.mit.edu	37	11	55540848	55540848	+	5'Flank	SNP	T	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5D14	219436	broad.mit.edu	37	11	55563657	55563657	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5T1	390155	broad.mit.edu	37	11	56043831	56043831	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6S1	341799	broad.mit.edu	37	14	21109399	21109399	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR7A10	390892	broad.mit.edu	37	19	14952563	14952563	+	Silent	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBPL1A	114876	broad.mit.edu	37	18	21891860	21891860	+	Intron	SNP	C	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTOF	9381	broad.mit.edu	37	2	26684427	26684427	+	Intron	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTOF	9381	broad.mit.edu	37	2	26695370	26695370	+	Intron	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTOS	150677	broad.mit.edu	37	2	241079494	241079494	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAAF1	80227	broad.mit.edu	37	11	73638539	73638539	+	3'UTR	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAK7	57144	broad.mit.edu	37	20	9520105	9520105	+	3'UTR	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PALLD	23022	broad.mit.edu	37	4	169845379	169845379	+	Intron	SNP	T	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAOX	196743	broad.mit.edu	37	10	135202736	135202736	+	Intron	SNP	C	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARP4	143	broad.mit.edu	37	13	25064615	25064615	+	Intron	SNP	G	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARVB	29780	broad.mit.edu	37	22	44553945	44553945	+	Silent	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PASD1	139135	broad.mit.edu	37	X	150832577	150832577	+	Intron	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	56106373	56106373	+	Intron	SNP	T	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH18	54510	broad.mit.edu	37	4	138451033	138451033	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH9	5101	broad.mit.edu	37	13	67802047	67802047	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB19P	84054	broad.mit.edu	37	5	140621191	140621191	+	3'UTR	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGB5	56101	broad.mit.edu	37	5	140779851	140779851	+	Silent	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDP1	200373	broad.mit.edu	37	2	120385415	120385415	+	Intron	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCOLCE2	26577	broad.mit.edu	37	3	142567166	142567166	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE6A	5145	broad.mit.edu	37	5	149312257	149312257	+	Intron	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDHX	8050	broad.mit.edu	37	11	34987995	34987995	+	Intron	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDILT	204474	broad.mit.edu	37	16	20410503	20410503	+	Silent	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDS5A	23244	broad.mit.edu	37	4	39977929	39977929	+	Intron	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZD2	23037	broad.mit.edu	37	5	32048790	32048790	+	Silent	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZD4	57595	broad.mit.edu	37	X	153069678	153069678	+	Silent	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEPD	5184	broad.mit.edu	37	19	33991872	33991872	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PER1	5187	broad.mit.edu	37	17	8050972	8050972	+	Intron	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEX14	5195	broad.mit.edu	37	1	10690005	10690005	+	Silent	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEX5	5830	broad.mit.edu	37	12	7360576	7360576	+	Intron	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PFDN5	5204	broad.mit.edu	37	12	53691907	53691907	+	Missense_Mutation	SNP	C	T	T	rs146649111		TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGM5	5239	broad.mit.edu	37	9	71002378	71002378	+	Splice_Site	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHYH	5264	broad.mit.edu	37	10	13325587	13325587	+	Intron	SNP	T	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PI4K2A	55361	broad.mit.edu	37	10	99371248	99371248	+	Intron	SNP	A	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3C3	5289	broad.mit.edu	37	18	39537617	39537617	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3CA	5290	broad.mit.edu	37	3	178937196	178937196	+	Intron	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3CG	5294	broad.mit.edu	37	7	106523627	106523627	+	Intron	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIP5K1C	23396	broad.mit.edu	37	19	3641807	3641807	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD2L1	9033	broad.mit.edu	37	10	102058641	102058641	+	Intron	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1	5314	broad.mit.edu	37	6	51768857	51768858	+	Intron	DNP	CC	AA	AA			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA1A	51365	broad.mit.edu	37	3	119344001	119344001	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCE1	51196	broad.mit.edu	37	10	96053177	96053177	+	Intron	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLG	5340	broad.mit.edu	37	6	161162462	161162462	+	Intron	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PMS1	5378	broad.mit.edu	37	2	190687366	190687366	+	Intron	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNPLA7	375775	broad.mit.edu	37	9	140395109	140395109	+	Intron	SNP	G	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLA1	5422	broad.mit.edu	37	X	24760000	24760000	+	Intron	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLB	5423	broad.mit.edu	37	8	42213036	42213036	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLQ	10721	broad.mit.edu	37	3	121264751	121264751	+	5'UTR	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POSTN	10631	broad.mit.edu	37	13	38138664	38138664	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEE	445582	broad.mit.edu	37	2	132021859	132021859	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEG	404785	broad.mit.edu	37	14	19563597	19563597	+	Intron	SNP	T	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R3D	5509	broad.mit.edu	37	20	58514323	58514323	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R5D	5528	broad.mit.edu	37	6	42975334	42975334	+	Intron	SNP	T	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRAMEF12	390999	broad.mit.edu	37	1	12836257	12836257	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRAMEF4	400735	broad.mit.edu	37	1	12939691	12939691	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRC1	9055	broad.mit.edu	37	15	91522252	91522252	+	Intron	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM10	56980	broad.mit.edu	37	11	129800718	129800718	+	Intron	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM13	59336	broad.mit.edu	37	6	100055141	100055142	+	Intron	DNP	GG	AT	AT			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIC285	85441	broad.mit.edu	37	20	62192981	62192981	+	Missense_Mutation	SNP	C	T	T	rs143065747		TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIM2	5558	broad.mit.edu	37	6	57512590	57512590	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCQ	5588	broad.mit.edu	37	10	6504417	6504417	+	Intron	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRMT10	90826	broad.mit.edu	37	4	148604886	148604886	+	Intron	DEL	G	-	-	rs6535547		TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS50	29122	broad.mit.edu	37	3	46757060	46757060	+	Silent	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSAP	5660	broad.mit.edu	37	10	73590756	73590756	+	Intron	SNP	G	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG3	5671	broad.mit.edu	37	19	43228127	43228127	+	3'UTR	SNP	A	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG9	5678	broad.mit.edu	37	19	43757877	43757877	+	Intron	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMA8	143471	broad.mit.edu	37	18	23714091	23714091	+	Intron	SNP	C	A	A	rs79333468	byFrequency;by1000genomes	TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSPC1	55269	broad.mit.edu	37	13	20346557	20346557	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN5	84867	broad.mit.edu	37	11	18750956	18750956	+	Intron	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRF	5792	broad.mit.edu	37	1	44072344	44072344	+	Intron	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRU	10076	broad.mit.edu	37	1	29601961	29601961	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRU	10076	broad.mit.edu	37	1	29642689	29642690	+	Intron	DEL	GT	-	-			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PVRL1	5818	broad.mit.edu	37	11	119509626	119509626	+	Intron	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXDNL	137902	broad.mit.edu	37	8	52320781	52320781	+	Frame_Shift_Del	DEL	C	-	-			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXDN	7837	broad.mit.edu	37	2	1652348	1652348	+	Silent	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PYGM	5837	broad.mit.edu	37	11	64525444	64525444	+	Intron	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB8B	51762	broad.mit.edu	37	15	63536975	63536975	+	Missense_Mutation	SNP	A	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RACGAP1	29127	broad.mit.edu	37	12	50384012	50384012	+	3'UTR	SNP	T	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASA2	5922	broad.mit.edu	37	3	141290443	141290443	+	Intron	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASGRP3	25780	broad.mit.edu	37	2	33745389	33745389	+	Intron	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASGRP3	25780	broad.mit.edu	37	2	33745455	33745455	+	Intron	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBP3	5949	broad.mit.edu	37	10	48389941	48389941	+	Silent	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RCBTB2	1102	broad.mit.edu	37	13	49070638	49070638	+	Intron	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103390112	103390112	+	Intron	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFWD2	64326	broad.mit.edu	37	1	176145170	176145170	+	Intron	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFWD3	55159	broad.mit.edu	37	16	74671949	74671949	+	Intron	SNP	T	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGPD4	285190	broad.mit.edu	37	2	108476072	108476072	+	Intron	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS12	6002	broad.mit.edu	37	4	3432320	3432320	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS3	5998	broad.mit.edu	37	9	116267776	116267776	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHEB	6009	broad.mit.edu	37	7	151200591	151200591	+	Intron	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHOBTB1	9886	broad.mit.edu	37	10	62645707	62645707	+	Intron	SNP	A	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIBC2	26150	broad.mit.edu	37	22	45818415	45818415	+	Intron	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS2	9699	broad.mit.edu	37	8	104581002	104581002	+	Intron	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIN1	9610	broad.mit.edu	37	11	66100964	66100964	+	Intron	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIOK3	8780	broad.mit.edu	37	18	21033225	21033225	+	5'UTR	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIT2	6014	broad.mit.edu	37	18	40695491	40695491	+	5'UTR	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RLF	6018	broad.mit.edu	37	1	40627278	40627278	+	Silent	SNP	A	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNASEN	29102	broad.mit.edu	37	5	31529112	31529112	+	Intron	SNP	T	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF152	220441	broad.mit.edu	37	18	59483460	59483460	+	Silent	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNH1	6050	broad.mit.edu	37	11	500626	500626	+	Silent	SNP	G	T	T	rs149360262		TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO1	6091	broad.mit.edu	37	3	79638913	79638913	+	Intron	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL21	6144	broad.mit.edu	37	13	27829569	27829569	+	Intron	SNP	T	C	C	rs143708880	by1000genomes	TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL21	6144	broad.mit.edu	37	13	27830439	27830439	+	Nonsense_Mutation	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS29	6235	broad.mit.edu	37	14	50053060	50053060	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RRAGD	58528	broad.mit.edu	37	6	90088977	90088977	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSAD1	55316	broad.mit.edu	37	17	48559232	48559232	+	Intron	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSPO2	340419	broad.mit.edu	37	8	109001582	109001582	+	Intron	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUFY3	22902	broad.mit.edu	37	4	71588535	71588535	+	Intron	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237802270	237802270	+	Intron	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	33988747	33988747	+	Intron	SNP	T	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	34149857	34149857	+	Intron	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
S100A8	6279	broad.mit.edu	37	1	153363208	153363208	+	Intron	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
S1PR3	1903	broad.mit.edu	37	9	91616344	91616344	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SATB2	23314	broad.mit.edu	37	2	200213530	200213530	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCAMP3	10067	broad.mit.edu	37	1	155230304	155230304	+	Intron	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN10A	6336	broad.mit.edu	37	3	38753557	38753557	+	Intron	SNP	G	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN10A	6336	broad.mit.edu	37	3	38835624	38835624	+	5'Flank	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN11A	11280	broad.mit.edu	37	3	38961557	38961557	+	Intron	SNP	A	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCRG1	11341	broad.mit.edu	37	4	174312327	174312327	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCUBE3	222663	broad.mit.edu	37	6	35210036	35210036	+	Silent	SNP	A	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDK1	221935	broad.mit.edu	37	7	4281522	4281522	+	Silent	SNP	C	T	T	rs141297041		TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC13	6396	broad.mit.edu	37	3	10354103	10354103	+	Intron	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEH1L	81929	broad.mit.edu	37	18	12955608	12955608	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA6B	10501	broad.mit.edu	37	19	4552480	4552480	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA6D	80031	broad.mit.edu	37	15	48063502	48063502	+	Silent	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEPT7	989	broad.mit.edu	37	7	35903124	35903124	+	Intron	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINA13	388007	broad.mit.edu	37	14	95108209	95108209	+	Silent	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB3	6317	broad.mit.edu	37	18	61326622	61326622	+	Intron	SNP	G	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB7	8710	broad.mit.edu	37	18	61459667	61459667	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB9	5272	broad.mit.edu	37	6	2895574	2895574	+	Intron	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETBP1	26040	broad.mit.edu	37	18	42618463	42618463	+	Silent	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFPQ	6421	broad.mit.edu	37	1	35656881	35656881	+	Intron	SNP	T	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFXN5	94097	broad.mit.edu	37	2	73215340	73215340	+	Intron	SNP	C	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3BGRL2	83699	broad.mit.edu	37	6	80383467	80383467	+	Missense_Mutation	SNP	A	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3RF1	57630	broad.mit.edu	37	4	170077704	170077704	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164785378	164785378	+	Intron	SNP	G	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SKP2	6502	broad.mit.edu	37	5	36152994	36152994	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLAIN1	122060	broad.mit.edu	37	13	78327435	78327435	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC14A1	6563	broad.mit.edu	37	18	43319551	43319551	+	Silent	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A3	10786	broad.mit.edu	37	6	25861926	25861926	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A4	10050	broad.mit.edu	37	6	25776840	25776840	+	Silent	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC18A2	6571	broad.mit.edu	37	10	119013909	119013909	+	Intron	SNP	T	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC18A2	6571	broad.mit.edu	37	10	119015285	119015285	+	Intron	SNP	T	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A14	9389	broad.mit.edu	37	3	38348710	38348710	+	Intron	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A2	6582	broad.mit.edu	37	6	160668334	160668334	+	Intron	SNP	G	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A11	8402	broad.mit.edu	37	17	4842201	4842201	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC2A3	6515	broad.mit.edu	37	12	8074110	8074110	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35D2	11046	broad.mit.edu	37	9	99114336	99114336	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC38A7	55238	broad.mit.edu	37	16	58712724	58712724	+	Silent	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC39A12	221074	broad.mit.edu	37	10	18254567	18254567	+	Silent	SNP	T	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC39A1	27173	broad.mit.edu	37	1	153934660	153934660	+	Intron	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A12	159963	broad.mit.edu	37	11	26692557	26692557	+	3'UTR	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A5	9152	broad.mit.edu	37	11	20648251	20648251	+	Intron	SNP	T	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC7A10	56301	broad.mit.edu	37	19	33703293	33703293	+	Silent	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC7A4	6545	broad.mit.edu	37	22	21384144	21384144	+	Silent	SNP	G	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC8A1	6546	broad.mit.edu	37	2	40656143	40656143	+	Silent	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO6A1	133482	broad.mit.edu	37	5	101735314	101735314	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT3	6586	broad.mit.edu	37	5	168127707	168127707	+	Intron	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK2	84631	broad.mit.edu	37	X	144904510	144904510	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK2	84631	broad.mit.edu	37	X	144906366	144906366	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMARCC2	6601	broad.mit.edu	37	12	56563739	56563739	+	Intron	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNIP1	79753	broad.mit.edu	37	1	38005680	38005680	+	Intron	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS3	22986	broad.mit.edu	37	10	107005445	107005445	+	Intron	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP140L	93349	broad.mit.edu	37	2	231264881	231264881	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG16	79582	broad.mit.edu	37	2	214215278	214215278	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG17	200162	broad.mit.edu	37	1	118527328	118527328	+	Missense_Mutation	SNP	A	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG17	200162	broad.mit.edu	37	1	118609425	118609425	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPARC	6678	broad.mit.edu	37	5	151045789	151045789	+	Intron	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA16	83893	broad.mit.edu	37	3	172634000	172634000	+	Intron	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPDYC	387778	broad.mit.edu	37	11	64938719	64938719	+	Intron	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158596753	158596753	+	Silent	SNP	T	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158647682	158647682	+	Intron	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTB	6710	broad.mit.edu	37	14	65268580	65268580	+	Intron	SNP	A	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SQRDL	58472	broad.mit.edu	37	15	45983411	45983411	+	3'UTR	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SQRDL	58472	broad.mit.edu	37	15	45983413	45983413	+	3'UTR	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRCAP	10847	broad.mit.edu	37	16	30723216	30723216	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRGAP2	23380	broad.mit.edu	37	1	206619343	206619343	+	Intron	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSX8	280659	broad.mit.edu	37	X	52654537	52654537	+	Intron	DEL	T	-	-			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAB2	55576	broad.mit.edu	37	12	104078705	104078705	+	Intron	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STEAP2	261729	broad.mit.edu	37	7	89856415	89856415	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUGT1	10910	broad.mit.edu	37	13	53241004	53241004	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULT1C3	442038	broad.mit.edu	37	2	108863862	108863862	+	Intron	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUN5	140732	broad.mit.edu	37	20	31590615	31590615	+	Intron	SNP	C	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUPV3L1	6832	broad.mit.edu	37	10	70951419	70951419	+	Silent	SNP	A	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SVEP1	79987	broad.mit.edu	37	9	113261349	113261349	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYN2	6854	broad.mit.edu	37	3	12112030	12112030	+	Intron	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAGLN	6876	broad.mit.edu	37	11	117074381	117074381	+	Intron	SNP	G	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TERT	7015	broad.mit.edu	37	5	1282455	1282455	+	Intron	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX11	56159	broad.mit.edu	37	X	70127484	70127484	+	Intron	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX14	56155	broad.mit.edu	37	17	56661724	56661724	+	Intron	SNP	A	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THNSL1	79896	broad.mit.edu	37	10	25313947	25313947	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THNSL2	55258	broad.mit.edu	37	2	88484982	88484982	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THOC5	8563	broad.mit.edu	37	22	29932483	29932483	+	Intron	SNP	T	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THOP1	7064	broad.mit.edu	37	19	2796159	2796159	+	Silent	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7B	80731	broad.mit.edu	37	2	138169140	138169140	+	Intron	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TJP2	9414	broad.mit.edu	37	9	71869204	71869204	+	Nonsense_Mutation	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMC1	117531	broad.mit.edu	37	9	75263629	75263629	+	Intron	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM120B	144404	broad.mit.edu	37	12	122199586	122199586	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132D	121256	broad.mit.edu	37	12	130184930	130184930	+	Silent	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM183A	92703	broad.mit.edu	37	1	202991943	202991943	+	Intron	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM200A	114801	broad.mit.edu	37	6	130762171	130762171	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM201	199953	broad.mit.edu	37	1	9658630	9658630	+	Silent	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM25	84866	broad.mit.edu	37	11	118403401	118403401	+	Intron	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM39B	55116	broad.mit.edu	37	1	32557579	32557579	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM63A	9725	broad.mit.edu	37	1	226049877	226049878	+	Intron	DEL	GG	-	-			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS7	344805	broad.mit.edu	37	3	111775992	111775992	+	Intron	SNP	A	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMTC1	83857	broad.mit.edu	37	12	29670472	29670472	+	Missense_Mutation	SNP	A	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNKS1BP1	85456	broad.mit.edu	37	11	57068012	57068012	+	3'UTR	SNP	T	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNNI3	7137	broad.mit.edu	37	19	55666160	55666160	+	Silent	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNS3	64759	broad.mit.edu	37	7	47479350	47479350	+	Intron	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOP1MT	116447	broad.mit.edu	37	8	144403622	144403634	+	Intron	DEL	CACACACGCACGC	-	-	rs62524730	by1000genomes	TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7577099	7577099	+	Missense_Mutation	SNP	C	A	A	rs121912660		TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPO	7173	broad.mit.edu	37	2	1497723	1497723	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE2	93492	broad.mit.edu	37	13	20077249	20077249	+	Intron	SNP	A	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAK1	22906	broad.mit.edu	37	3	42265231	42265231	+	3'UTR	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAT1	50852	broad.mit.edu	37	3	108557802	108557802	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TREML4	285852	broad.mit.edu	37	6	41198006	41198006	+	Intron	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRHDE	29953	broad.mit.edu	37	12	73056896	73056896	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM48	79097	broad.mit.edu	37	11	55032998	55032998	+	Intron	SNP	T	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIO	7204	broad.mit.edu	37	5	14363744	14363744	+	Intron	SNP	T	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TROAP	10024	broad.mit.edu	37	12	49717254	49717254	+	Intron	SNP	T	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM1	4308	broad.mit.edu	37	15	31318338	31318338	+	Intron	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPV2	51393	broad.mit.edu	37	17	16323552	16323552	+	Silent	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPV5	56302	broad.mit.edu	37	7	142627208	142627208	+	Silent	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRRAP	8295	broad.mit.edu	37	7	98478714	98478714	+	5'UTR	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRYX3	136541	broad.mit.edu	37	7	141957559	141957559	+	5'UTR	SNP	C	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHZ3	57616	broad.mit.edu	37	19	31768945	31768945	+	Missense_Mutation	SNP	G	T	T	rs61747224	byFrequency;by1000genomes	TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHZ3	57616	broad.mit.edu	37	19	31769102	31769102	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSIX	9383	broad.mit.edu	37	X	73041696	73041696	+	RNA	SNP	A	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTLL3	26140	broad.mit.edu	37	3	9854722	9854722	+	Silent	SNP	A	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179616220	179616220	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBE1	51175	broad.mit.edu	37	6	112397335	112397335	+	Intron	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBG2	27175	broad.mit.edu	37	17	40818306	40818306	+	Intron	SNP	A	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBGCP2	10844	broad.mit.edu	37	10	135103496	135103496	+	Intron	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
U2AF2	11338	broad.mit.edu	37	19	56174085	56174085	+	Intron	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2D1	7321	broad.mit.edu	37	10	60124575	60124575	+	Silent	SNP	T	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2D3	7323	broad.mit.edu	37	4	103722680	103722681	+	Frame_Shift_Ins	INS	-	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2O	63893	broad.mit.edu	37	17	74394977	74394977	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBN2	254048	broad.mit.edu	37	7	138954223	138954223	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBN2	254048	broad.mit.edu	37	7	138978325	138978325	+	Intron	SNP	T	G	G	rs142379257	by1000genomes	TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBOX5	22888	broad.mit.edu	37	20	3095893	3095893	+	Intron	SNP	A	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UFD1L	7353	broad.mit.edu	37	22	19443986	19443986	+	Intron	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGGT1	56886	broad.mit.edu	37	2	128877779	128877779	+	Intron	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UMODL1	89766	broad.mit.edu	37	21	43505485	43505485	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UMODL1	89766	broad.mit.edu	37	21	43539056	43539056	+	Intron	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UMOD	7369	broad.mit.edu	37	16	20355555	20355555	+	Intron	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USF2	7392	broad.mit.edu	37	19	35761990	35761990	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH1C	10083	broad.mit.edu	37	11	17517199	17517199	+	Intron	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216246128	216246128	+	Intron	SNP	C	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216258244	216258244	+	Intron	SNP	A	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP19	10869	broad.mit.edu	37	3	49151718	49151718	+	Splice_Site	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP34	9736	broad.mit.edu	37	2	61441859	61441859	+	Intron	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP42	84132	broad.mit.edu	37	7	6182611	6182611	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP6	9098	broad.mit.edu	37	17	5038329	5038329	+	Intron	SNP	A	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP6	9098	broad.mit.edu	37	17	5038335	5038335	+	Intron	SNP	G	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP6	9098	broad.mit.edu	37	17	5040419	5040419	+	Missense_Mutation	SNP	A	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP7	7874	broad.mit.edu	37	16	9010502	9010502	+	Intron	SNP	A	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP8	9101	broad.mit.edu	37	15	50769167	50769167	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTRN	7402	broad.mit.edu	37	6	144719330	144719330	+	Intron	SNP	G	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	43232094	43232094	+	IGR	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	114183289	114183289	+	IGR	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	18978206	18978206	+	IGR	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	4388479	4388479	+	IGR	SNP	T	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	4616325	4616325	+	IGR	SNP	T	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	4745133	4745133	+	IGR	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49942574	49942574	+	IGR	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	56143268	56143268	+	IGR	SNP	A	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	107295142	107295142	+	IGR	SNP	T	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	53143644	53143644	+	IGR	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	58638337	58638337	+	IGR	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	76531990	76531990	+	IGR	SNP	A	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	77115320	77115320	+	IGR	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	80707373	80707373	+	IGR	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	94534291	94534291	+	IGR	SNP	A	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	19782715	19782715	+	IGR	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	21522793	21522793	+	IGR	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	64549925	64549925	+	IGR	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	84481751	84481751	+	IGR	SNP	T	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	90823322	90823322	+	IGR	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19807248	19807248	+	IGR	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20137689	20137689	+	IGR	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20137691	20137691	+	IGR	SNP	G	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20264562	20264562	+	IGR	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	25900811	25900811	+	IGR	SNP	A	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	25901136	25901136	+	IGR	SNP	A	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	60960777	60960777	+	IGR	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	45613511	45613511	+	IGR	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	78191748	78191748	+	IGR	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	79026255	79026255	+	IGR	DEL	C	-	-			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	93844761	93844761	+	IGR	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	31173720	31173720	+	IGR	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34660422	34660422	+	IGR	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	49580162	49580163	+	IGR	DNP	GG	TT	TT			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	52831777	52831777	+	IGR	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	60217946	60217946	+	IGR	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	60374302	60374302	+	IGR	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	11625771	11625771	+	IGR	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	14392243	14392243	+	IGR	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	41901303	41901303	+	IGR	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	47177156	47177156	+	IGR	SNP	T	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	20874541	20874541	+	IGR	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	20878647	20878647	+	IGR	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	7056547	7056547	+	IGR	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	9302132	9302132	+	IGR	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	101721954	101721954	+	IGR	DEL	G	-	-			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	148903497	148903497	+	IGR	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	164326652	164326652	+	IGR	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	192685786	192685786	+	IGR	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	208870719	208870719	+	IGR	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	39175407	39175407	+	IGR	SNP	A	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	80558014	80558014	+	IGR	SNP	T	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	8891277	8891277	+	IGR	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	37388801	37388801	+	IGR	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	17339966	17339966	+	IGR	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	101042512	101042512	+	IGR	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	103028182	103028182	+	IGR	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132349464	132349464	+	IGR	SNP	G	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	208922215	208922215	+	IGR	SNP	G	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	21098933	21098933	+	IGR	SNP	C	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	50106303	50106303	+	IGR	SNP	T	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	67241229	67241229	+	IGR	SNP	T	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91791053	91791053	+	IGR	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91872750	91872750	+	IGR	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	120525529	120525529	+	IGR	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	148704340	148704340	+	IGR	SNP	T	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	29129264	29129264	+	IGR	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	36211457	36211457	+	IGR	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	74150820	74150820	+	IGR	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	80491131	80491131	+	IGR	SNP	T	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	87101397	87101397	+	IGR	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	90291177	90291177	+	IGR	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	96068379	96068379	+	IGR	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	11373722	11373722	+	IGR	SNP	C	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	130057954	130057954	+	IGR	SNP	G	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	189660303	189660303	+	IGR	SNP	T	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	57829505	57829505	+	IGR	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	69481796	69481796	+	IGR	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	78825807	78825807	+	IGR	SNP	A	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	29769617	29769617	+	IGR	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	34231018	34231018	+	IGR	SNP	A	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	87780209	87780209	+	IGR	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	10492545	10492545	+	IGR	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	126935907	126935907	+	IGR	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	138089137	138089137	+	IGR	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	14110720	14110720	+	IGR	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	143855226	143855226	+	IGR	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	144707180	144707180	+	IGR	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	15741324	15741324	+	IGR	SNP	G	T	T	rs61736240		TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	18001618	18001618	+	IGR	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	53930814	53930814	+	IGR	SNP	A	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	62518014	62518014	+	IGR	DEL	G	-	-			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	92098789	92098789	+	IGR	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	144474193	144474196	+	IGR	DEL	CACT	-	-	rs150406849	by1000genomes	TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	7885655	7885655	+	IGR	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	92922173	92922173	+	IGR	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	110942432	110942432	+	IGR	SNP	C	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	43163156	43163156	+	IGR	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	44175325	44175325	+	IGR	SNP	C	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66836693	66836693	+	IGR	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66963525	66963525	+	IGR	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	106845905	106845905	+	IGR	SNP	G	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	135378541	135378541	+	IGR	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	151073276	151073276	+	IGR	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	57703943	57703943	+	IGR	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	8254051	8254051	+	IGR	SNP	A	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS52	6293	broad.mit.edu	37	6	33235811	33235811	+	Intron	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WARS2	10352	broad.mit.edu	37	1	119576065	119576065	+	Intron	SNP	C	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WASF3	10810	broad.mit.edu	37	13	27241892	27241892	+	Intron	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDHD1	11169	broad.mit.edu	37	14	55493428	55493428	+	Splice_Site	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR12	55759	broad.mit.edu	37	2	203748526	203748526	+	Intron	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR34	89891	broad.mit.edu	37	9	131396070	131396070	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR66	144406	broad.mit.edu	37	12	122369737	122369737	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR72	256764	broad.mit.edu	37	15	54015097	54015097	+	Silent	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDYHV1	55093	broad.mit.edu	37	8	124448859	124448859	+	Intron	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNK3	65267	broad.mit.edu	37	X	54359453	54359453	+	Intron	DEL	G	-	-			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WTAP	9589	broad.mit.edu	37	6	160176630	160176630	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WWC2	80014	broad.mit.edu	37	4	184182214	184182214	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XDH	7498	broad.mit.edu	37	2	31588955	31588955	+	Silent	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIRP2	129446	broad.mit.edu	37	2	168107680	168107680	+	Nonsense_Mutation	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIST	7503	broad.mit.edu	37	X	73066515	73066515	+	RNA	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XYLT1	64131	broad.mit.edu	37	16	17228249	17228249	+	Intron	DEL	G	-	-			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBBX	79740	broad.mit.edu	37	3	167000007	167000007	+	Intron	DEL	A	-	-			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3H13	23091	broad.mit.edu	37	13	46549342	46549342	+	Intron	SNP	T	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3H18	124245	broad.mit.edu	37	16	88675167	88675167	+	Intron	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77776623	77776624	+	Frame_Shift_Del	DEL	TG	-	-			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFP36L1	677	broad.mit.edu	37	14	69256985	69256985	+	Silent	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIC4	84107	broad.mit.edu	37	3	147108911	147108911	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIM3	114026	broad.mit.edu	37	19	57647586	57647586	+	Intron	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMYND11	10771	broad.mit.edu	37	10	225956	225956	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMYND8	23613	broad.mit.edu	37	20	45976743	45976743	+	Intron	SNP	T	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF14	7561	broad.mit.edu	37	19	19823805	19823805	+	Silent	SNP	T	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF236	7776	broad.mit.edu	37	18	74583760	74583760	+	Nonsense_Mutation	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF239	8187	broad.mit.edu	37	10	44052539	44052539	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF334	55713	broad.mit.edu	37	20	45131753	45131753	+	Intron	SNP	A	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF550	162972	broad.mit.edu	37	19	58058519	58058519	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF592	9640	broad.mit.edu	37	15	85342390	85342390	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF609	23060	broad.mit.edu	37	15	64966541	64966541	+	Silent	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF614	80110	broad.mit.edu	37	19	52519539	52519539	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF618	114991	broad.mit.edu	37	9	116812463	116812463	+	3'UTR	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF622	90441	broad.mit.edu	37	5	16458528	16458528	+	Intron	SNP	T	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF629	23361	broad.mit.edu	37	16	30794657	30794657	+	Nonsense_Mutation	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF660	285349	broad.mit.edu	37	3	44636480	44636480	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF665	79788	broad.mit.edu	37	19	53669109	53669109	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF667	63934	broad.mit.edu	37	19	56973649	56973649	+	Intron	SNP	G	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF702P	79986	broad.mit.edu	37	19	53484168	53484168	+	RNA	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF716	441234	broad.mit.edu	37	7	57529498	57529498	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF765	91661	broad.mit.edu	37	19	53878905	53878905	+	Intron	SNP	A	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF793	390927	broad.mit.edu	37	19	38014430	38014432	+	Intron	DEL	GTA	-	-			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22471872	22471872	+	Intron	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20490523	20490523	+	RNA	DEL	G	-	-			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	22466515	22466515	+	5'Flank	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	28967187	28967187	+	Intron	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	29115346	29115346	+	Intron	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	39564472	39564473	+	Intron	DNP	CC	AA	AA			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	12164706	12164706	+	Intron	SNP	A	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132294225	132294225	+	Intron	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90121771	90121771	+	Intron	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90122030	90122030	+	RNA	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	905372	905372	+	RNA	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	33162734	33162734	+	RNA	SNP	G	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	100549831	100549831	+	5'Flank	SNP	A	G	G			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	100551709	100551709	+	RNA	SNP	T	C	C			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142124579	142124579	+	Intron	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142157917	142157917	+	Intron	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142231548	142231548	+	Intron	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142499625	142499625	+	Intron	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	39874090	39874090	+	3'UTR	SNP	C	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	97109757	97109757	+	Intron	SNP	C	A	A			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	13329237	13329237	+	5'Flank	SNP	G	T	T			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
