Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
A2BP1	54715	broad.mit.edu	37	16	7391115	7391115	+	Intron	SNP	C	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA13	154664	broad.mit.edu	37	7	48450174	48450174	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC9	10060	broad.mit.edu	37	12	22012522	22012522	+	Silent	SNP	A	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACAD8	27034	broad.mit.edu	37	11	134129553	134129553	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACCN1	40	broad.mit.edu	37	17	32410083	32410083	+	Intron	SNP	C	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSL4	2182	broad.mit.edu	37	X	108890893	108890893	+	Intron	SNP	A	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33613397	33613397	+	Intron	SNP	C	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY2	108	broad.mit.edu	37	5	7757305	7757305	+	Intron	SNP	G	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADK	132	broad.mit.edu	37	10	76229552	76229552	+	Intron	SNP	C	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGPAT5	55326	broad.mit.edu	37	8	6599347	6599347	+	Intron	SNP	G	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGTR2	186	broad.mit.edu	37	X	115304268	115304268	+	Silent	SNP	G	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP3	10566	broad.mit.edu	37	12	4745325	4745325	+	Intron	SNP	C	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH7A1	501	broad.mit.edu	37	5	125928432	125928432	+	Intron	SNP	A	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALPK1	80216	broad.mit.edu	37	4	113278105	113278105	+	Intron	SNP	C	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANAPC7	51434	broad.mit.edu	37	12	110820967	110820967	+	Intron	SNP	G	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANGPT1	284	broad.mit.edu	37	8	108347560	108347560	+	Intron	SNP	C	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKFN1	162282	broad.mit.edu	37	17	54424093	54424094	+	Intron	INS	-	T	T	rs139099753	by1000genomes	TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO3	63982	broad.mit.edu	37	11	26452942	26452942	+	Intron	SNP	C	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APBA2	321	broad.mit.edu	37	15	29316287	29316287	+	Intron	SNP	A	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APC	324	broad.mit.edu	37	5	112175212	112175216	+	Frame_Shift_Del	DEL	AAAAG	-	-			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF6	9459	broad.mit.edu	37	X	135827684	135827684	+	Intron	SNP	C	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARV1	64801	broad.mit.edu	37	1	231125836	231125836	+	Intron	SNP	G	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP6V0A1	535	broad.mit.edu	37	17	40629591	40629591	+	Intron	SNP	C	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP8A2	51761	broad.mit.edu	37	13	26411405	26411405	+	Silent	SNP	C	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAT2L1	84726	broad.mit.edu	37	9	134351251	134351251	+	Silent	SNP	C	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BBS9	27241	broad.mit.edu	37	7	33512166	33512166	+	Intron	SNP	G	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCL2L13	23786	broad.mit.edu	37	22	18189500	18189500	+	Intron	SNP	C	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BIN2	51411	broad.mit.edu	37	12	51689556	51689556	+	Intron	DEL	A	-	-			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BPIL2	254240	broad.mit.edu	37	22	32819568	32819568	+	Intron	SNP	T	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTBD9	114781	broad.mit.edu	37	6	38396217	38396217	+	Intron	SNP	G	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTRC	8945	broad.mit.edu	37	10	103292248	103292248	+	Intron	SNP	G	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTRC	8945	broad.mit.edu	37	10	103303562	103303562	+	Intron	SNP	C	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf68	79741	broad.mit.edu	37	10	33159249	33159249	+	Intron	SNP	A	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf26	84190	broad.mit.edu	37	12	82792957	82792957	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf40	283461	broad.mit.edu	37	12	40047344	40047344	+	Intron	SNP	C	T	T	rs71075068		TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf51	283450	broad.mit.edu	37	12	112686139	112686139	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf57	124989	broad.mit.edu	37	17	45451930	45451930	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf64	124773	broad.mit.edu	37	17	58504037	58504037	+	Intron	SNP	G	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf26	54823	broad.mit.edu	37	1	185189667	185189667	+	Intron	SNP	T	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C21orf29	54084	broad.mit.edu	37	21	45941910	45941910	+	Silent	SNP	G	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf142	90523	broad.mit.edu	37	6	53993125	53993125	+	Intron	SNP	C	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf221	154288	broad.mit.edu	37	6	74072700	74072700	+	Intron	SNP	G	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf36	57002	broad.mit.edu	37	7	39606002	39606002	+	5'Flank	SNP	C	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8orf86	389649	broad.mit.edu	37	8	38369846	38369846	+	3'UTR	SNP	G	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1B	774	broad.mit.edu	37	9	140830910	140830910	+	Intron	SNP	A	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1F	778	broad.mit.edu	37	X	49090431	49090432	+	5'Flank	INS	-	GTG	GTG			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMK1G	57172	broad.mit.edu	37	1	209764643	209764643	+	Intron	SNP	A	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CARKD	55739	broad.mit.edu	37	13	111279955	111279955	+	Intron	SNP	A	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCBL2	56267	broad.mit.edu	37	1	89418695	89418695	+	Intron	SNP	A	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC105	126402	broad.mit.edu	37	19	15132685	15132685	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC109A	90550	broad.mit.edu	37	10	74509676	74509676	+	Intron	SNP	T	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC113	29070	broad.mit.edu	37	16	58312296	58312296	+	Intron	SNP	G	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC148	130940	broad.mit.edu	37	2	159255858	159255858	+	Intron	SNP	A	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC148	130940	broad.mit.edu	37	2	159255860	159255860	+	Intron	SNP	C	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD38	952	broad.mit.edu	37	4	15815419	15815419	+	Intron	SNP	G	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC123	8872	broad.mit.edu	37	10	12252057	12252057	+	Intron	SNP	C	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC25A	993	broad.mit.edu	37	3	48222382	48222382	+	Intron	SNP	C	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH12	1010	broad.mit.edu	37	5	22622961	22622961	+	Intron	SNP	G	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH13	1012	broad.mit.edu	37	16	82940446	82940446	+	Intron	SNP	T	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH23	64072	broad.mit.edu	37	10	73405745	73405745	+	Intron	SNP	C	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH23	64072	broad.mit.edu	37	10	73462464	73462464	+	Intron	SNP	C	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK14	5218	broad.mit.edu	37	7	90379504	90379504	+	Intron	SNP	C	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK15	65061	broad.mit.edu	37	2	202693164	202693164	+	Intron	DEL	A	-	-			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDKN2BAS	100048912	broad.mit.edu	37	9	22064242	22064242	+	Intron	SNP	A	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFH	3075	broad.mit.edu	37	1	196695578	196695578	+	Intron	SNP	T	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRM2	1129	broad.mit.edu	37	7	136623176	136623176	+	Intron	SNP	T	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRM4	1132	broad.mit.edu	37	11	46408021	46408021	+	Silent	SNP	C	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCA4	22802	broad.mit.edu	37	1	87018365	87018365	+	Intron	SNP	G	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLDN12	9069	broad.mit.edu	37	7	90028036	90028036	+	Intron	SNP	A	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGB1	1258	broad.mit.edu	37	16	57973721	57973721	+	Intron	SNP	G	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNOT2	4848	broad.mit.edu	37	12	70721135	70721135	+	Intron	SNP	G	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN5	53942	broad.mit.edu	37	11	100211244	100211244	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP5	129684	broad.mit.edu	37	2	125470812	125470812	+	Intron	SNP	C	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COCH	1690	broad.mit.edu	37	14	31354228	31354229	+	Intron	DNP	TG	AA	AA			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COG2	22796	broad.mit.edu	37	1	230788298	230788298	+	Intron	SNP	C	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103379123	103379123	+	Intron	SNP	T	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A2	1302	broad.mit.edu	37	6	33139548	33139548	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL19A1	1310	broad.mit.edu	37	6	70778247	70778247	+	Intron	SNP	C	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139704450	139704450	+	Intron	SNP	T	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A5	1287	broad.mit.edu	37	X	107886556	107886556	+	Intron	SNP	C	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A5	1287	broad.mit.edu	37	X	107886563	107886563	+	Intron	SNP	C	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A2	1290	broad.mit.edu	37	2	189918217	189918217	+	Intron	SNP	A	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COMMD10	51397	broad.mit.edu	37	5	115420694	115420694	+	5'Flank	SNP	G	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CR1L	1379	broad.mit.edu	37	1	207825711	207825711	+	Intron	SNP	A	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUL4A	8451	broad.mit.edu	37	13	113883895	113883895	+	Intron	SNP	G	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CWC25	54883	broad.mit.edu	37	17	36958457	36958457	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYCS	54205	broad.mit.edu	37	7	25163649	25163649	+	Silent	SNP	C	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DACH1	1602	broad.mit.edu	37	13	72342436	72342436	+	Intron	DEL	C	-	-	rs139880008		TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF12L1	139170	broad.mit.edu	37	X	125686548	125686548	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCLK3	85443	broad.mit.edu	37	3	36756835	36756835	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCST2	127579	broad.mit.edu	37	1	155003251	155003251	+	Intron	SNP	G	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDAH1	23576	broad.mit.edu	37	1	85797610	85797610	+	Intron	SNP	C	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX21	9188	broad.mit.edu	37	10	70721802	70721802	+	Intron	SNP	A	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKG	1608	broad.mit.edu	37	3	185975737	185975737	+	Intron	SNP	A	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKI	9162	broad.mit.edu	37	7	137148402	137148402	+	Intron	SNP	C	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX32	55760	broad.mit.edu	37	10	127582471	127582471	+	Intron	SNP	T	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIP2C	22982	broad.mit.edu	37	10	387429	387429	+	Intron	SNP	T	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMD	1756	broad.mit.edu	37	X	32509548	32509548	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC13	23317	broad.mit.edu	37	3	132172941	132172941	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP4	1803	broad.mit.edu	37	2	162865189	162865189	+	Intron	SNP	T	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPYD	1806	broad.mit.edu	37	1	98187108	98187108	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSCAM	1826	broad.mit.edu	37	21	41710046	41710046	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DST	667	broad.mit.edu	37	6	56524488	56524488	+	Intron	SNP	G	A	A	rs116419116	by1000genomes	TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EEF1B2	1933	broad.mit.edu	37	2	207025358	207025358	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELAVL2	1993	broad.mit.edu	37	9	23791620	23791621	+	Intron	INS	-	GC	GC	rs140811560	by1000genomes	TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELL3	80237	broad.mit.edu	37	15	44067855	44067855	+	Intron	SNP	A	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ETNK2	55224	broad.mit.edu	37	1	204115885	204115885	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM102B	284611	broad.mit.edu	37	1	109168428	109168428	+	Intron	SNP	G	T	T	rs58733075		TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM134C	162427	broad.mit.edu	37	17	40761280	40761280	+	Silent	SNP	G	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM48B2	170067	broad.mit.edu	37	X	24332234	24332234	+	5'Flank	SNP	G	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGGY	55277	broad.mit.edu	37	1	59838938	59838938	+	Intron	SNP	A	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FILIP1	27145	broad.mit.edu	37	6	76022197	76022197	+	Silent	SNP	G	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FILIP1	27145	broad.mit.edu	37	6	76022205	76022205	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152275390	152275390	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLT3	2322	broad.mit.edu	37	13	28578244	28578244	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN2	56776	broad.mit.edu	37	1	240387898	240387898	+	Intron	SNP	A	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN2	56776	broad.mit.edu	37	1	240387906	240387906	+	Intron	SNP	C	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMNL2	114793	broad.mit.edu	37	2	153476138	153476138	+	Silent	SNP	T	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRAS1	80144	broad.mit.edu	37	4	79420851	79420851	+	Intron	SNP	G	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRAS1	80144	broad.mit.edu	37	4	79440872	79440872	+	Intron	SNP	A	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRG1B	284802	broad.mit.edu	37	20	29619261	29619261	+	Intron	SNP	T	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRG1B	284802	broad.mit.edu	37	20	29628906	29628906	+	Intron	SNP	A	G	G	rs139542051	by1000genomes	TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRG1B	284802	broad.mit.edu	37	20	29648092	29648092	+	Intron	SNP	G	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMD4A	55691	broad.mit.edu	37	10	14202526	14202526	+	Intron	SNP	T	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMD4B	23150	broad.mit.edu	37	3	69225852	69225852	+	Intron	SNP	A	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSTL5	56884	broad.mit.edu	37	4	162421035	162421035	+	Intron	SNP	G	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAB2	9846	broad.mit.edu	37	11	77937572	77937572	+	Silent	SNP	G	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GJA8	2703	broad.mit.edu	37	1	147380379	147380379	+	Silent	SNP	C	T	T	rs142426709		TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLP2R	9340	broad.mit.edu	37	17	9739737	9739737	+	Silent	SNP	T	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLUD2	2747	broad.mit.edu	37	X	120181912	120181912	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNAQ	2776	broad.mit.edu	37	9	80547839	80547839	+	Intron	SNP	T	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNGT1	2792	broad.mit.edu	37	7	93414782	93414782	+	Intron	SNP	T	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPC5	2262	broad.mit.edu	37	13	92370017	92370017	+	Intron	SNP	G	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPC5	2262	broad.mit.edu	37	13	92370031	92370031	+	Intron	SNP	G	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIA3	2892	broad.mit.edu	37	X	122598990	122598990	+	Intron	SNP	G	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK2	2898	broad.mit.edu	37	6	102426348	102426348	+	Intron	SNP	T	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCY1A2	2977	broad.mit.edu	37	11	106858150	106858150	+	Intron	SNP	G	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HBG2	3048	broad.mit.edu	37	11	5274361	5274361	+	Intron	SNP	A	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HBG2	3048	broad.mit.edu	37	11	5274583	5274583	+	Intron	SNP	A	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEPACAM2	253012	broad.mit.edu	37	7	92844778	92844778	+	Nonsense_Mutation	SNP	G	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HGF	3082	broad.mit.edu	37	7	81372779	81372779	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HK1	3098	broad.mit.edu	37	10	71142474	71142474	+	Silent	SNP	G	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	186010097	186010097	+	Intron	SNP	A	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS3ST4	9951	broad.mit.edu	37	16	26005309	26005309	+	Intron	SNP	G	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPA5	3309	broad.mit.edu	37	9	128001021	128001021	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IKBKAP	8518	broad.mit.edu	37	9	111636890	111636890	+	Intron	SNP	G	C	C	rs117414549	byFrequency;by1000genomes	TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL17RE	132014	broad.mit.edu	37	3	9945190	9945190	+	Intron	SNP	C	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1RAPL2	26280	broad.mit.edu	37	X	103899611	103899611	+	Intron	SNP	T	A	A	rs144184271	by1000genomes	TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1RAPL2	26280	broad.mit.edu	37	X	104973880	104973880	+	Intron	SNP	A	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INVS	27130	broad.mit.edu	37	9	102879476	102879476	+	Intron	SNP	A	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQGAP3	128239	broad.mit.edu	37	1	156524106	156524106	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRAK3	11213	broad.mit.edu	37	12	66641740	66641740	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KBTBD5	131377	broad.mit.edu	37	3	42733406	42733406	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNIP1	30820	broad.mit.edu	37	5	169779473	169779473	+	5'Flank	DEL	C	-	-			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK6	9424	broad.mit.edu	37	19	38817875	38817875	+	Silent	SNP	C	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNMA1	3778	broad.mit.edu	37	10	78729751	78729751	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNMA1	3778	broad.mit.edu	37	10	78761171	78761171	+	Missense_Mutation	SNP	G	T	T	rs117053189	by1000genomes	TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF20B	9585	broad.mit.edu	37	10	91477524	91477524	+	Intron	SNP	A	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KMO	8564	broad.mit.edu	37	1	241715312	241715313	+	Intron	INS	-	GG	GG	rs147430596	by1000genomes	TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT34	3885	broad.mit.edu	37	17	39537907	39537907	+	Intron	SNP	G	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT79	338785	broad.mit.edu	37	12	53223945	53223945	+	Intron	SNP	G	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT7	3855	broad.mit.edu	37	12	52639508	52639508	+	Intron	SNP	C	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
L3MBTL4	91133	broad.mit.edu	37	18	6244411	6244411	+	Intron	SNP	A	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA2	3908	broad.mit.edu	37	6	129543644	129543644	+	Intron	SNP	C	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LDB2	9079	broad.mit.edu	37	4	16510019	16510019	+	Intron	SNP	C	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LEPRE1	64175	broad.mit.edu	37	1	43213468	43213468	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHX9	56956	broad.mit.edu	37	1	197881778	197881778	+	Intron	SNP	T	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIFR	3977	broad.mit.edu	37	5	38499604	38499604	+	Intron	SNP	T	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB1	10859	broad.mit.edu	37	19	55142481	55142481	+	5'UTR	SNP	G	A	A	rs114930141	by1000genomes	TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIMCH1	22998	broad.mit.edu	37	4	41390058	41390058	+	Intron	SNP	C	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC284632	284632	broad.mit.edu	37	1	24529644	24529644	+	Intron	SNP	C	T	T	rs141439997	by1000genomes	TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC286094	286094	broad.mit.edu	37	8	136284714	136284714	+	Intron	SNP	T	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC654342	654342	broad.mit.edu	37	2	91811137	91811137	+	Intron	SNP	C	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC654342	654342	broad.mit.edu	37	2	91820382	91820382	+	Intron	SNP	G	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC654342	654342	broad.mit.edu	37	2	91826742	91826742	+	Intron	SNP	G	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	23040837	23040837	+	RNA	SNP	A	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN3	23284	broad.mit.edu	37	4	62188763	62188763	+	Intron	SNP	C	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC37A2	474170	broad.mit.edu	37	17	44594667	44594667	+	Intron	SNP	T	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTBP1	4052	broad.mit.edu	37	2	33500077	33500077	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LUZP2	338645	broad.mit.edu	37	11	24753657	24753657	+	Intron	SNP	T	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYZL1	84569	broad.mit.edu	37	10	29580783	29580783	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPK10	5602	broad.mit.edu	37	4	87334525	87334525	+	Intron	SNP	G	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPK8	5599	broad.mit.edu	37	10	49618334	49618334	+	Intron	SNP	A	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH1	55016	broad.mit.edu	37	4	165110911	165110911	+	Intron	SNP	A	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEPE	56955	broad.mit.edu	37	4	88759878	88759878	+	Intron	SNP	C	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MID2	11043	broad.mit.edu	37	X	107088753	107088753	+	Intron	SNP	A	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL3	58508	broad.mit.edu	37	7	152077098	152077098	+	Intron	SNP	G	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOCS3	27304	broad.mit.edu	37	20	49575564	49575564	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MON2	23041	broad.mit.edu	37	12	62936948	62936948	+	Silent	SNP	G	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOXD1	26002	broad.mit.edu	37	6	132649103	132649103	+	Intron	SNP	A	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPZL1	9019	broad.mit.edu	37	1	167743713	167743713	+	Intron	SNP	A	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPL21	219927	broad.mit.edu	37	11	68660338	68660338	+	Intron	SNP	C	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPL33	9553	broad.mit.edu	37	2	28002278	28002278	+	Intron	SNP	A	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH15	22989	broad.mit.edu	37	3	108118142	108118142	+	Intron	SNP	G	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH2	4620	broad.mit.edu	37	17	10432234	10432234	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH4	4622	broad.mit.edu	37	17	10358095	10358095	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO9A	4649	broad.mit.edu	37	15	72141239	72141239	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NACA2	342538	broad.mit.edu	37	17	59667970	59667970	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV3	89795	broad.mit.edu	37	12	78457794	78457794	+	Intron	SNP	C	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBEA	26960	broad.mit.edu	37	13	35672502	35672502	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCRNA00164	554226	broad.mit.edu	37	2	132982686	132982686	+	Intron	SNP	T	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL1	4745	broad.mit.edu	37	11	20959354	20959354	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEU3	10825	broad.mit.edu	37	11	74716632	74716632	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NHEDC1	150159	broad.mit.edu	37	4	103865368	103865368	+	Intron	SNP	G	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NHEDC1	150159	broad.mit.edu	37	4	103865386	103865386	+	Intron	SNP	G	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP1	22861	broad.mit.edu	37	17	5407155	5407155	+	Intron	DEL	A	-	-	rs112591758		TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP1	22861	broad.mit.edu	37	17	5481274	5481274	+	Intron	SNP	C	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP4	147945	broad.mit.edu	37	19	56364178	56364179	+	Intron	DEL	TT	-	-	rs35935257		TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NME7	29922	broad.mit.edu	37	1	169319479	169319479	+	Intron	SNP	A	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUDT3	11165	broad.mit.edu	37	6	34312583	34312583	+	Intron	SNP	C	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUPL1	9818	broad.mit.edu	37	13	25894582	25894582	+	Intron	SNP	C	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OGDH	4967	broad.mit.edu	37	7	44747321	44747321	+	Silent	SNP	C	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPCML	4978	broad.mit.edu	37	11	133328672	133328672	+	Intron	SNP	A	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2A9P	441295	broad.mit.edu	37	7	144020687	144020687	+	Intron	SNP	A	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L13	284521	broad.mit.edu	37	1	248223941	248223941	+	Intron	SNP	T	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAK7	57144	broad.mit.edu	37	20	9560716	9560716	+	Intron	SNP	G	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAQR5	54852	broad.mit.edu	37	15	69615238	69615238	+	Intron	SNP	G	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PASK	23178	broad.mit.edu	37	2	242070220	242070222	+	Intron	DEL	AGG	-	-	rs80351289		TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PATE1	160065	broad.mit.edu	37	11	125616600	125616600	+	Intron	SNP	G	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA11	56138	broad.mit.edu	37	5	140250075	140250075	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA3	56145	broad.mit.edu	37	5	140182819	140182819	+	Silent	SNP	G	A	A	rs34395025	byFrequency;by1000genomes	TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB1	29930	broad.mit.edu	37	5	140432692	140432692	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCLO	27445	broad.mit.edu	37	7	82586125	82586125	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCSK5	5125	broad.mit.edu	37	9	78536499	78536500	+	Intron	DEL	TG	-	-			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE11A	50940	broad.mit.edu	37	2	178575650	178575650	+	Intron	SNP	C	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE1B	5153	broad.mit.edu	37	12	54943614	54943614	+	Intron	SNP	G	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE1C	5137	broad.mit.edu	37	7	31926457	31926457	+	Intron	SNP	C	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE3A	5139	broad.mit.edu	37	12	20769252	20769252	+	Nonsense_Mutation	SNP	T	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDK4	5166	broad.mit.edu	37	7	95222056	95222056	+	Intron	SNP	T	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGBD2	267002	broad.mit.edu	37	1	249211872	249211872	+	Silent	SNP	G	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1L1	93035	broad.mit.edu	37	8	110441625	110441625	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXDC2	84898	broad.mit.edu	37	10	20333047	20333047	+	Intron	SNP	T	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNPLA5	150379	broad.mit.edu	37	22	44282341	44282341	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLQ	10721	broad.mit.edu	37	3	121248522	121248522	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPEF2	5470	broad.mit.edu	37	4	76793210	76793210	+	Silent	SNP	G	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPFIBP2	8495	broad.mit.edu	37	11	7650658	7650658	+	Intron	SNP	A	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPPDE1	51029	broad.mit.edu	37	1	244857682	244857682	+	Intron	SNP	T	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM16	63976	broad.mit.edu	37	1	3327964	3327964	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREP	5550	broad.mit.edu	37	6	105741552	105741552	+	Intron	SNP	C	T	T	rs114925291	by1000genomes	TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIM2	5558	broad.mit.edu	37	6	57509411	57509411	+	Intron	SNP	T	C	C	rs147685626	by1000genomes	TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIM2	5558	broad.mit.edu	37	6	57512914	57512914	+	3'UTR	SNP	C	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCE	5581	broad.mit.edu	37	2	45947325	45947325	+	Intron	SNP	A	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG1	5669	broad.mit.edu	37	19	43348788	43348788	+	Intron	SNP	A	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMD1	5707	broad.mit.edu	37	2	231926010	231926010	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN13	5783	broad.mit.edu	37	4	87638144	87638144	+	Intron	SNP	C	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRA	5786	broad.mit.edu	37	20	2848695	2848695	+	Intron	SNP	C	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRS	5802	broad.mit.edu	37	19	5273447	5273447	+	Intron	SNP	C	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PYROXD2	84795	broad.mit.edu	37	10	100152675	100152675	+	Intron	SNP	G	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB2B	84932	broad.mit.edu	37	14	21944687	21944687	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB30	27314	broad.mit.edu	37	11	82705342	82705342	+	Intron	SNP	A	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALGPS2	55103	broad.mit.edu	37	1	178861581	178861581	+	Intron	SNP	T	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAPGEF6	51735	broad.mit.edu	37	5	131007115	131007115	+	Intron	SNP	A	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM28	55131	broad.mit.edu	37	7	127982956	127982956	+	Intron	SNP	C	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFWD2	64326	broad.mit.edu	37	1	176092144	176092144	+	Intron	SNP	T	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFX2	5990	broad.mit.edu	37	19	6073413	6073413	+	Intron	SNP	C	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS1	22999	broad.mit.edu	37	6	72699029	72699029	+	Intron	SNP	T	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF217	154214	broad.mit.edu	37	6	125403751	125403751	+	Intron	SNP	A	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO1	6091	broad.mit.edu	37	3	78795962	78795962	+	Silent	SNP	G	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO1	6091	broad.mit.edu	37	3	79736503	79736503	+	Intron	SNP	A	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROR2	4920	broad.mit.edu	37	9	94488820	94488820	+	Intron	SNP	G	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS12	6206	broad.mit.edu	37	6	133137915	133137915	+	Intron	SNP	G	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RRP15	51018	broad.mit.edu	37	1	218458934	218458934	+	Intron	SNP	T	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSU1	6251	broad.mit.edu	37	10	16801199	16801199	+	Intron	SNP	A	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237759000	237759000	+	Intron	SNP	T	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	33767805	33767805	+	Intron	SNP	C	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	33789327	33789327	+	Intron	SNP	G	A	A	rs150841045	by1000genomes	TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SACS	26278	broad.mit.edu	37	13	23912692	23912692	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCG2	7857	broad.mit.edu	37	2	224463855	224463855	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCMH1	22955	broad.mit.edu	37	1	41582539	41582539	+	Intron	SNP	C	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN8A	6334	broad.mit.edu	37	12	52059876	52059876	+	Intron	SNP	T	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIAE	54414	broad.mit.edu	37	11	124509388	124509388	+	Intron	SNP	G	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A2	10246	broad.mit.edu	37	6	25921137	25921137	+	Intron	SNP	T	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A9	114571	broad.mit.edu	37	11	63175706	63175706	+	Intron	SNP	A	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC24A3	57419	broad.mit.edu	37	20	19604560	19604560	+	Intron	SNP	C	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC33A1	9197	broad.mit.edu	37	3	155551077	155551077	+	Intron	SNP	A	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC38A11	151258	broad.mit.edu	37	2	165793987	165793987	+	Intron	SNP	T	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A15	55117	broad.mit.edu	37	12	85255686	85255686	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A6	6533	broad.mit.edu	37	3	14509475	14509475	+	Intron	SNP	C	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A10	285335	broad.mit.edu	37	3	111860139	111860139	+	Intron	SNP	C	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A1	6548	broad.mit.edu	37	1	27436121	27436121	+	Nonsense_Mutation	SNP	G	A	A	rs150618776		TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT1	6585	broad.mit.edu	37	10	98773998	98773998	+	Intron	SNP	C	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT2	9353	broad.mit.edu	37	4	20600074	20600074	+	Intron	SNP	C	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMARCC1	6599	broad.mit.edu	37	3	47705146	47705146	+	Intron	SNP	C	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNRPN	6638	broad.mit.edu	37	15	25156089	25156089	+	Intron	SNP	A	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS1	114815	broad.mit.edu	37	10	108430807	108430807	+	Intron	SNP	T	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS3	22986	broad.mit.edu	37	10	106976645	106976645	+	Intron	SNP	A	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOX5	6660	broad.mit.edu	37	12	24414420	24414420	+	Intron	SNP	C	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPG20	23111	broad.mit.edu	37	13	36903442	36903442	+	Intron	SNP	A	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPOCK1	6695	broad.mit.edu	37	5	136324155	136324155	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT6	148281	broad.mit.edu	37	1	114640308	114640308	+	Intron	SNP	C	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TACC1	6867	broad.mit.edu	37	8	38625643	38625643	+	Intron	SNP	G	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAPT1	202018	broad.mit.edu	37	4	16164811	16164811	+	3'UTR	SNP	C	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TARBP1	6894	broad.mit.edu	37	1	234529569	234529569	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D9	23158	broad.mit.edu	37	4	141619120	141619120	+	Intron	SNP	C	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX5	6910	broad.mit.edu	37	12	114793735	114793736	+	Frame_Shift_Ins	INS	-	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THBS4	7060	broad.mit.edu	37	5	79378987	79378987	+	3'UTR	SNP	G	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLN1	7094	broad.mit.edu	37	9	35714249	35714249	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM136	219902	broad.mit.edu	37	11	120199551	120199551	+	Intron	SNP	A	T	T	rs144293655	by1000genomes	TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM56	148534	broad.mit.edu	37	1	95603248	95603248	+	Intron	SNP	T	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMTC1	83857	broad.mit.edu	37	12	29785969	29785969	+	Intron	SNP	C	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFRSF19	55504	broad.mit.edu	37	13	24233371	24233371	+	Intron	SNP	T	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNNI3K	51086	broad.mit.edu	37	1	74864318	74864318	+	Intron	SNP	G	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7577536	7577536	+	Missense_Mutation	SNP	T	C	C	rs67185453		TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPMT	7172	broad.mit.edu	37	6	18130960	18130960	+	Missense_Mutation	SNP	C	T	T	rs139392616		TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPRXL	348825	broad.mit.edu	37	3	13978590	13978590	+	5'Flank	SNP	C	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE2	93492	broad.mit.edu	37	13	20068856	20068856	+	Intron	SNP	C	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAK2	66008	broad.mit.edu	37	2	202276374	202276374	+	Intron	SNP	A	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM42	287015	broad.mit.edu	37	3	140407231	140407231	+	Silent	SNP	C	T	T	rs148437702		TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM3	80036	broad.mit.edu	37	9	73169321	73169321	+	Intron	SNP	G	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM6	140803	broad.mit.edu	37	9	77365452	77365452	+	Intron	SNP	G	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179528833	179528833	+	Intron	SNP	G	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179593263	179593263	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TYRP1	7306	broad.mit.edu	37	9	12709190	12709190	+	3'UTR	SNP	C	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBP1	7342	broad.mit.edu	37	3	33466939	33466939	+	Intron	SNP	T	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP44	84101	broad.mit.edu	37	12	95927783	95927783	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	10086763	10086763	+	IGR	SNP	G	A	A	rs149734092	by1000genomes	TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	10184314	10184314	+	IGR	SNP	A	G	G	rs118110103	by1000genomes	TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	122079081	122079081	+	IGR	SNP	C	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	37880116	37880116	+	IGR	SNP	G	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	57517807	57517807	+	IGR	SNP	T	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	8599608	8599608	+	IGR	SNP	G	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	96418779	96418779	+	IGR	SNP	G	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	9965875	9965875	+	IGR	SNP	C	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	102873108	102873108	+	IGR	SNP	C	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	106182495	106182495	+	IGR	SNP	C	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	107184483	107184483	+	IGR	SNP	G	A	A	rs113502542	by1000genomes	TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	109920787	109920787	+	IGR	SNP	G	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	121093223	121093223	+	IGR	SNP	G	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	127766061	127766061	+	IGR	SNP	A	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	14454484	14454484	+	IGR	SNP	A	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	48844506	48844506	+	IGR	SNP	T	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	48844524	48844524	+	IGR	SNP	A	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49323514	49323514	+	IGR	SNP	A	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49865745	49865745	+	IGR	SNP	C	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	56130148	56130148	+	IGR	SNP	A	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	71414278	71414278	+	IGR	SNP	A	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	71414356	71414356	+	IGR	SNP	G	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	81250115	81250115	+	IGR	SNP	T	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	87472889	87472889	+	IGR	SNP	C	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	87577153	87577153	+	IGR	SNP	G	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	97094274	97094274	+	IGR	SNP	T	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	98551654	98551654	+	IGR	SNP	C	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	11517984	11517984	+	IGR	SNP	C	T	T	rs117829253	by1000genomes	TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	127835840	127835841	+	IGR	DEL	AG	-	-			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	34462060	34462060	+	IGR	SNP	C	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	42356769	42356769	+	IGR	SNP	T	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	47464707	47464707	+	IGR	SNP	A	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	54283483	54283483	+	IGR	SNP	C	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	60491962	60491962	+	IGR	SNP	T	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	60771903	60771903	+	IGR	SNP	A	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	82641410	82641410	+	IGR	SNP	T	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	88838793	88838793	+	IGR	SNP	C	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	94066962	94066962	+	IGR	SNP	T	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	19538169	19538169	+	IGR	SNP	C	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	23150895	23150895	+	IGR	SNP	T	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	45403505	45403505	+	IGR	SNP	G	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	54551420	54551420	+	IGR	SNP	C	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	56812613	56812613	+	IGR	SNP	G	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	58974750	58974750	+	IGR	SNP	A	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	59862712	59862713	+	IGR	DEL	TG	-	-	rs60623708		TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	63658584	63658584	+	IGR	SNP	A	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	84929289	84929289	+	IGR	SNP	A	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20084467	20084467	+	IGR	SNP	C	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20207841	20207841	+	IGR	SNP	T	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	54540408	54540408	+	IGR	SNP	A	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	65746771	65746771	+	IGR	SNP	C	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	85919758	85919758	+	IGR	SNP	G	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20107891	20107891	+	IGR	SNP	T	A	A	rs149092276	by1000genomes	TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20107900	20107900	+	IGR	SNP	G	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20137962	20137962	+	IGR	SNP	C	T	T	rs62007905		TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	36712196	36712196	+	IGR	SNP	A	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	47390682	47390682	+	IGR	SNP	G	C	C	rs148649785	by1000genomes	TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33043425	33043425	+	IGR	SNP	A	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33052505	33052505	+	IGR	SNP	T	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33394708	33394708	+	IGR	SNP	C	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33991792	33991792	+	IGR	SNP	A	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34179183	34179183	+	IGR	SNP	C	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	46389377	46389377	+	IGR	SNP	T	C	C	rs28865304		TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	46464915	46464915	+	IGR	SNP	G	T	T	rs77291031	by1000genomes	TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	64225918	64225918	+	IGR	SNP	G	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	76269128	76269128	+	IGR	SNP	C	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	21337213	21337213	+	IGR	SNP	G	C	C	rs138393960	by1000genomes	TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	22148345	22148345	+	IGR	SNP	G	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	25267017	25267017	+	IGR	SNP	G	T	T	rs36178686		TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	52719182	52719182	+	IGR	SNP	T	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	71686136	71686136	+	IGR	SNP	G	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	75613910	75613910	+	IGR	SNP	C	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	11622369	11622369	+	IGR	SNP	T	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	33426185	33426185	+	IGR	SNP	C	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	48021320	48021320	+	IGR	SNP	A	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	55003916	55003916	+	IGR	SNP	C	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	76028389	76028389	+	IGR	SNP	C	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	121479787	121479787	+	IGR	SNP	A	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	142552333	142552333	+	IGR	SNP	C	A	A	rs143300081	by1000genomes	TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	142561184	142561184	+	IGR	SNP	T	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	143514311	143514311	+	IGR	SNP	T	G	G	rs78461749		TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149021398	149021398	+	IGR	SNP	T	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	152067648	152067648	+	IGR	SNP	A	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	152710110	152710110	+	IGR	SNP	G	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	163592876	163592876	+	IGR	SNP	T	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	164974880	164974880	+	IGR	SNP	G	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	168499654	168499654	+	IGR	SNP	T	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	172929655	172929655	+	IGR	SNP	G	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	182102812	182102812	+	IGR	SNP	G	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	19326535	19326535	+	IGR	SNP	A	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	194577919	194577919	+	IGR	SNP	C	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	199130153	199130153	+	IGR	SNP	G	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	238383657	238383657	+	IGR	SNP	G	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	239215952	239215952	+	IGR	SNP	A	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	31038851	31038851	+	IGR	SNP	C	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	32324916	32324919	+	IGR	DEL	GATA	-	-			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	55482274	55482275	+	IGR	INS	-	TTGT	TTGT	rs144437507	by1000genomes	TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	66946813	66946813	+	IGR	SNP	G	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	726948	726948	+	IGR	SNP	T	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	84754626	84754626	+	IGR	SNP	T	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	8953701	8953701	+	IGR	SNP	C	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	89795957	89795957	+	IGR	SNP	T	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	22027063	22027063	+	IGR	SNP	G	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	22177057	22177057	+	IGR	SNP	T	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	29455769	29455769	+	IGR	SNP	G	A	A	rs143978668	by1000genomes	TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	38772721	38772721	+	IGR	SNP	T	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	40627126	40627126	+	IGR	SNP	C	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	47508011	47508011	+	IGR	SNP	G	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	7187749	7187749	+	IGR	SNP	A	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	7812954	7812954	+	IGR	SNP	A	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10152999	10152999	+	IGR	SNP	A	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10618883	10618883	+	IGR	SNP	A	G	G	rs141913711	by1000genomes	TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10700317	10700317	+	IGR	SNP	G	A	A	rs149293255		TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	28269552	28269552	+	IGR	SNP	C	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	9436096	9436096	+	IGR	SNP	G	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	9646623	9646623	+	IGR	SNP	C	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	9667173	9667173	+	IGR	SNP	G	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	9674252	9674252	+	IGR	SNP	G	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16422938	16422938	+	IGR	SNP	A	G	G	rs77698091		TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	105237510	105237510	+	IGR	SNP	C	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	107637463	107637463	+	IGR	SNP	G	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132368683	132368683	+	IGR	SNP	A	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132790471	132790471	+	IGR	SNP	T	C	C	rs74574946		TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	155376666	155376666	+	IGR	SNP	T	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	162138799	162138799	+	IGR	SNP	T	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	168308190	168308190	+	IGR	SNP	G	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	17672817	17672817	+	IGR	SNP	C	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	185368322	185368322	+	IGR	SNP	A	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	188539329	188539329	+	IGR	SNP	C	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	193898937	193898937	+	IGR	SNP	A	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	209810955	209810955	+	IGR	SNP	C	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	35153208	35153208	+	IGR	SNP	C	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	49919136	49919136	+	IGR	SNP	C	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	57210078	57210078	+	IGR	SNP	G	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	59514168	59514168	+	IGR	SNP	T	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91798049	91798049	+	IGR	SNP	T	C	C	rs75520980		TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	96517406	96517406	+	IGR	SNP	C	G	G	rs76454483		TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	98016516	98016517	+	IGR	INS	-	C	C	rs72545181		TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	145542444	145542444	+	IGR	SNP	G	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	146817757	146817757	+	IGR	SNP	T	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	148281264	148281264	+	IGR	SNP	C	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	148281292	148281292	+	IGR	SNP	A	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	166847672	166847672	+	IGR	SNP	C	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	168007688	168007688	+	IGR	SNP	A	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	168420535	168420535	+	IGR	SNP	T	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	170992	170992	+	IGR	SNP	T	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	180979502	180979502	+	IGR	SNP	A	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	182123427	182123427	+	IGR	SNP	T	A	A	rs147862437	by1000genomes	TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	194711992	194711992	+	IGR	SNP	C	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	26349488	26349488	+	IGR	SNP	G	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	75884528	75884528	+	IGR	SNP	T	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	104199633	104199633	+	IGR	SNP	G	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	125832280	125832280	+	IGR	SNP	A	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	12750213	12750213	+	IGR	SNP	G	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	13200496	13200496	+	IGR	SNP	C	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	157031528	157031528	+	IGR	SNP	A	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	157627937	157627937	+	IGR	SNP	C	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	160387103	160387103	+	IGR	SNP	T	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190156562	190156562	+	IGR	SNP	G	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190671159	190671159	+	IGR	SNP	C	A	A	rs113407282		TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	28853618	28853618	+	IGR	SNP	A	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	33012912	33012912	+	IGR	SNP	T	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	37195	37195	+	IGR	SNP	C	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	41929	41929	+	IGR	SNP	A	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	49514522	49514522	+	IGR	SNP	A	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	72808367	72808367	+	IGR	SNP	A	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	111842602	111842602	+	IGR	SNP	G	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	164780258	164780259	+	IGR	INS	-	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	18673704	18673704	+	IGR	SNP	C	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	23304767	23304767	+	IGR	SNP	G	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	2594343	2594343	+	IGR	SNP	T	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	26140045	26140045	+	IGR	SNP	C	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	2787884	2787884	+	IGR	SNP	G	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	49405738	49405738	+	IGR	SNP	G	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	67057409	67057409	+	IGR	SNP	A	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	103818074	103818074	+	IGR	SNP	A	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	103818095	103818095	+	IGR	SNP	T	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	112721428	112721428	+	IGR	SNP	C	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	133444592	133444592	+	IGR	SNP	A	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	139533833	139533833	+	IGR	SNP	G	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	141509761	141509761	+	IGR	SNP	G	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	71760909	71760909	+	IGR	SNP	G	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	82692945	82692945	+	IGR	SNP	G	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	85874475	85874475	+	IGR	SNP	T	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	100396713	100396713	+	IGR	SNP	C	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	112375815	112375815	+	IGR	SNP	G	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	112679420	112679420	+	IGR	SNP	G	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	150606928	150606929	+	IGR	DNP	TG	GT	GT	rs113359487		TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	152570272	152570272	+	IGR	SNP	A	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	22793508	22793508	+	IGR	SNP	G	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	41541255	41541255	+	IGR	SNP	G	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	49047329	49047329	+	IGR	SNP	T	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	53223455	53223455	+	IGR	SNP	G	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	61085476	61085476	+	IGR	SNP	T	A	A	rs75602162		TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	61831681	61831681	+	IGR	SNP	G	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	61969811	61969811	+	IGR	SNP	G	T	T	rs71199118		TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	64956477	64956477	+	IGR	SNP	T	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	64979140	64979140	+	IGR	SNP	T	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	64979144	64979144	+	IGR	SNP	T	C	C	rs145361347	by1000genomes	TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	67719632	67719632	+	IGR	SNP	C	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	7319087	7319087	+	IGR	SNP	G	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	127386753	127386753	+	IGR	SNP	G	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	15163964	15163964	+	IGR	SNP	C	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	15778600	15778600	+	IGR	SNP	A	C	C	rs113671238	by1000genomes	TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	80180669	80180669	+	IGR	SNP	A	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	87869607	87869607	+	IGR	SNP	A	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	93373053	93373053	+	IGR	SNP	C	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	104765762	104765762	+	IGR	SNP	A	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	116457981	116457981	+	IGR	SNP	C	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	12876555	12876555	+	IGR	SNP	T	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	25995226	25995226	+	IGR	SNP	G	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	44842514	44842514	+	IGR	SNP	C	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	46907290	46907290	+	IGR	SNP	G	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68393640	68393640	+	IGR	SNP	C	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68481358	68481358	+	IGR	SNP	C	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	69836247	69836247	+	IGR	SNP	G	C	C	rs79274974	by1000genomes	TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	7265344	7265344	+	IGR	SNP	C	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	81701787	81701787	+	IGR	SNP	A	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	87211771	87211771	+	IGR	SNP	G	A	A	rs117922993	by1000genomes	TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	100968176	100968176	+	IGR	SNP	T	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	105496762	105496762	+	IGR	SNP	C	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	106658313	106658313	+	IGR	SNP	T	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	115236439	115236439	+	IGR	SNP	A	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	126532739	126532739	+	IGR	SNP	A	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	133191192	133191192	+	IGR	SNP	G	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	140767053	140767053	+	IGR	SNP	A	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	144005010	144005010	+	IGR	SNP	A	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	145630721	145630721	+	IGR	SNP	G	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	146240565	146240565	+	IGR	SNP	G	A	A	rs138478353	by1000genomes	TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	25238891	25238891	+	IGR	SNP	A	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	26318508	26318508	+	IGR	SNP	C	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	3185684	3185684	+	IGR	SNP	C	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	34079882	34079882	+	IGR	SNP	C	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	37389154	37389154	+	IGR	SNP	G	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	387949	387949	+	IGR	SNP	C	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	44683511	44683511	+	IGR	SNP	C	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	46274011	46274011	+	IGR	SNP	G	A	A	rs34655574		TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	56667111	56667111	+	IGR	SNP	G	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	57850787	57850787	+	IGR	SNP	A	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	6228564	6228564	+	IGR	SNP	G	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	74918250	74918250	+	IGR	SNP	A	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	854736	854736	+	IGR	SNP	G	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	89294402	89294402	+	IGR	SNP	T	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	90614559	90614559	+	IGR	SNP	A	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VCAN	1462	broad.mit.edu	37	5	82849190	82849190	+	Silent	SNP	G	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VSNL1	7447	broad.mit.edu	37	2	17834083	17834083	+	Intron	SNP	C	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WBSCR17	64409	broad.mit.edu	37	7	70638218	70638218	+	Intron	SNP	C	T	T	rs144926836	by1000genomes	TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR41	55255	broad.mit.edu	37	5	76772960	76772960	+	Intron	SNP	A	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WSCD2	9671	broad.mit.edu	37	12	108634083	108634083	+	Intron	SNP	G	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WWC1	23286	broad.mit.edu	37	5	167861375	167861376	+	Intron	INS	-	G	G	rs144243144	by1000genomes	TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XYLT1	64131	broad.mit.edu	37	16	17431405	17431405	+	Intron	SNP	C	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YAP1	10413	broad.mit.edu	37	11	102100389	102100389	+	Intron	SNP	A	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCWPW1	55063	broad.mit.edu	37	7	100006026	100006026	+	Intron	SNP	C	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMAT4	79698	broad.mit.edu	37	8	40408154	40408154	+	Intron	SNP	C	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF540	163255	broad.mit.edu	37	19	38089366	38089366	+	Intron	SNP	C	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF618	114991	broad.mit.edu	37	9	116663358	116663358	+	Intron	SNP	C	G	G	rs111842223		TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF831	128611	broad.mit.edu	37	20	57828286	57828286	+	Intron	SNP	C	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF845	91664	broad.mit.edu	37	19	53856410	53856410	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	95460096	95460096	+	Intron	SNP	C	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	49048711	49048711	+	Intron	SNP	A	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	142620009	142620009	+	Intron	SNP	C	G	G	rs74962316		TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	144014594	144014594	+	Intron	SNP	G	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10454623	10454623	+	Intron	SNP	T	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10456500	10456500	+	Intron	SNP	C	A	A	rs2677968	by1000genomes	TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	37107983	37107984	+	Intron	INS	-	G	G	rs148413571	by1000genomes	TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	3032482	3032482	+	Intron	SNP	G	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	4970057	4970057	+	Intron	SNP	C	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	100150192	100150192	+	Intron	SNP	G	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	187396337	187396337	+	Intron	SNP	G	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190853157	190853157	+	Intron	SNP	T	C	C	rs146754186		TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	80125746	80125746	+	Intron	SNP	A	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	34191247	34191247	+	5'Flank	SNP	A	T	T			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	3488318	3488318	+	Intron	SNP	G	C	C			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	123780200	123780200	+	Intron	SNP	A	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	73267534	73267534	+	Intron	SNP	T	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	M	13180	13180	+	RNA	SNP	G	A	A			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	9380730	9380730	+	5'Flank	SNP	A	G	G			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
