Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
AAGAB	79719	broad.mit.edu	37	15	67501083	67501083	+	Intron	SNP	G	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA13	154664	broad.mit.edu	37	7	48318356	48318356	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC6P1	653190	broad.mit.edu	37	16	18586399	18586399	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC6	368	broad.mit.edu	37	16	16244113	16244113	+	Intron	SNP	G	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCG2	9429	broad.mit.edu	37	4	89034566	89034566	+	Silent	SNP	G	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSL6	23305	broad.mit.edu	37	5	131329695	131329695	+	Intron	SNP	C	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS17	170691	broad.mit.edu	37	15	100695409	100695409	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTSL3	57188	broad.mit.edu	37	15	84690439	84690439	+	Intron	DEL	T	-	-			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADH1B	125	broad.mit.edu	37	4	100235171	100235171	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADHFE1	137872	broad.mit.edu	37	8	67372711	67372711	+	Intron	SNP	G	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGAP3	116988	broad.mit.edu	37	7	150839715	150839715	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHSA1	10598	broad.mit.edu	37	14	77934887	77934887	+	Intron	SNP	C	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMBRA1	55626	broad.mit.edu	37	11	46450142	46450143	+	Intron	INS	-	T	T	rs2864834	by1000genomes	TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMZ2P1	201283	broad.mit.edu	37	17	62968646	62968646	+	Intron	SNP	G	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMZ2P1	201283	broad.mit.edu	37	17	62968734	62968734	+	RNA	SNP	G	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK2	287	broad.mit.edu	37	4	114095522	114095522	+	Intron	SNP	C	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKFY1	51479	broad.mit.edu	37	17	4077128	4077128	+	Intron	SNP	G	C	C			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKMY1	51281	broad.mit.edu	37	2	241468860	241468860	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD20A3	441425	broad.mit.edu	37	9	67965185	67965186	+	Intron	INS	-	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD36B	57730	broad.mit.edu	37	2	98129748	98129748	+	Silent	SNP	T	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AOX1	316	broad.mit.edu	37	2	201464399	201464399	+	Silent	SNP	G	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APBB2	323	broad.mit.edu	37	4	40936703	40936703	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOB	338	broad.mit.edu	37	2	21257726	21257726	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARAP3	64411	broad.mit.edu	37	5	141039358	141039358	+	Silent	SNP	G	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARFIP2	23647	broad.mit.edu	37	11	6500428	6500428	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARL5A	26225	broad.mit.edu	37	2	152659849	152659851	+	Intron	DEL	AAC	-	-			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARMC3	219681	broad.mit.edu	37	10	23270397	23270397	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARNT	405	broad.mit.edu	37	1	150785818	150785819	+	Intron	INS	-	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASCL3	56676	broad.mit.edu	37	11	8959359	8959359	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASPM	259266	broad.mit.edu	37	1	197074076	197074076	+	Silent	SNP	C	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN2	23245	broad.mit.edu	37	9	119249580	119249580	+	Intron	SNP	C	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN2	23245	broad.mit.edu	37	9	119737557	119737557	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATAD2	29028	broad.mit.edu	37	8	124368610	124368610	+	Intron	SNP	G	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP13A5	344905	broad.mit.edu	37	3	193096428	193096428	+	Intron	SNP	T	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BACE2	25825	broad.mit.edu	37	21	42618023	42618023	+	Intron	SNP	T	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCL11A	53335	broad.mit.edu	37	2	60688844	60688844	+	Silent	SNP	G	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCL9	607	broad.mit.edu	37	1	147094256	147094256	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BICC1	80114	broad.mit.edu	37	10	60556365	60556365	+	Intron	SNP	T	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTN2A2	10385	broad.mit.edu	37	6	26388563	26388563	+	Intron	SNP	G	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf11	83938	broad.mit.edu	37	10	77795795	77795795	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf35	55196	broad.mit.edu	37	12	32138481	32138481	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C16orf46	123775	broad.mit.edu	37	16	81094673	81094673	+	3'UTR	SNP	G	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf65	130951	broad.mit.edu	37	2	74855703	74855703	+	Intron	SNP	C	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3AR1	719	broad.mit.edu	37	12	8211099	8211099	+	3'UTR	SNP	G	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf21	55345	broad.mit.edu	37	4	113533734	113533734	+	Silent	SNP	T	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8orf33	65265	broad.mit.edu	37	8	146278340	146278340	+	Intron	SNP	C	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1B	774	broad.mit.edu	37	9	140807790	140807790	+	Intron	SNP	G	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181741121	181741121	+	Intron	SNP	G	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1S	779	broad.mit.edu	37	1	201042896	201042896	+	Intron	SNP	G	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D3	55799	broad.mit.edu	37	3	54952927	54952928	+	Intron	INS	-	C	C			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNG8	59283	broad.mit.edu	37	19	54466477	54466477	+	Silent	SNP	C	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAD	790	broad.mit.edu	37	2	27445613	27445613	+	Intron	SNP	A	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALB1	793	broad.mit.edu	37	8	91081231	91081231	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMSAP1L1	23271	broad.mit.edu	37	1	200818276	200818276	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASP10	843	broad.mit.edu	37	2	202074033	202074033	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CBX2	84733	broad.mit.edu	37	17	77753163	77753163	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC146	57639	broad.mit.edu	37	7	76916080	76916080	+	Intron	SNP	C	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC147	159686	broad.mit.edu	37	10	106209808	106209808	+	Intron	SNP	C	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC40	55036	broad.mit.edu	37	17	78073488	78073488	+	Silent	SNP	C	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCL23	6368	broad.mit.edu	37	17	34340259	34340259	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCT6B	10693	broad.mit.edu	37	17	33288358	33288358	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD180	4064	broad.mit.edu	37	5	66492427	66492427	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD247	919	broad.mit.edu	37	1	167400751	167400751	+	3'UTR	SNP	A	C	C			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD2BP2	10421	broad.mit.edu	37	16	30365165	30365165	+	Intron	SNP	A	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD5L	922	broad.mit.edu	37	1	157805761	157805761	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC45	8318	broad.mit.edu	37	22	19481818	19481818	+	Intron	SNP	T	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH24	64403	broad.mit.edu	37	14	23517523	23517523	+	Missense_Mutation	SNP	G	A	A	rs150958098	byFrequency	TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH2	1000	broad.mit.edu	37	18	25593716	25593716	+	Silent	SNP	C	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH9	1007	broad.mit.edu	37	5	26881306	26881306	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK17	5128	broad.mit.edu	37	12	96682801	96682802	+	Intron	DNP	CC	AG	AG			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK5R2	8941	broad.mit.edu	37	2	219825306	219825306	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK8	1024	broad.mit.edu	37	13	26959333	26959333	+	Intron	SNP	T	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CECR2	27443	broad.mit.edu	37	22	17897741	17897741	+	Intron	SNP	G	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELF5	60680	broad.mit.edu	37	19	3293126	3293126	+	Intron	SNP	T	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPC1	1060	broad.mit.edu	37	4	68374526	68374526	+	Intron	SNP	C	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFHR5	81494	broad.mit.edu	37	1	196965383	196965383	+	Intron	SNP	G	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CGB2	114336	broad.mit.edu	37	19	49535453	49535453	+	Intron	SNP	C	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD5	26038	broad.mit.edu	37	1	6202265	6202265	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRNA1	1134	broad.mit.edu	37	2	175618127	175618127	+	Intron	SNP	G	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CILP	8483	broad.mit.edu	37	15	65489854	65489854	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC14A	161198	broad.mit.edu	37	14	38724650	38724650	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLMN	79789	broad.mit.edu	37	14	95670140	95670140	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN5	53942	broad.mit.edu	37	11	100211307	100211307	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP5	129684	broad.mit.edu	37	2	125417632	125417632	+	Intron	SNP	G	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COG7	91949	broad.mit.edu	37	16	23457011	23457011	+	Intron	SNP	C	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103427478	103427478	+	Intron	SNP	G	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL15A1	1306	broad.mit.edu	37	9	101782503	101782503	+	Intron	SNP	C	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL28A1	340267	broad.mit.edu	37	7	7472368	7472368	+	Intron	SNP	C	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A2	1290	broad.mit.edu	37	2	189904079	189904079	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A6	131873	broad.mit.edu	37	3	130290029	130290029	+	Silent	SNP	C	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COQ6	51004	broad.mit.edu	37	14	74420334	74420334	+	Intron	SNP	C	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPD	1362	broad.mit.edu	37	17	28758706	28758706	+	Intron	SNP	C	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPNE4	131034	broad.mit.edu	37	3	131404858	131404858	+	Intron	SNP	G	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPNE4	131034	broad.mit.edu	37	3	131415374	131415374	+	Intron	SNP	C	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPNE4	131034	broad.mit.edu	37	3	131442524	131442524	+	Intron	SNP	G	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPSF1	29894	broad.mit.edu	37	8	145621958	145621959	+	Splice_Site	INS	-	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPVL	54504	broad.mit.edu	37	7	29112024	29112024	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CR2	1380	broad.mit.edu	37	1	207648401	207648401	+	Silent	SNP	C	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CREB5	9586	broad.mit.edu	37	7	28843965	28843965	+	Silent	SNP	G	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CREM	1390	broad.mit.edu	37	10	35500800	35500800	+	3'UTR	SNP	A	C	C			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	3351088	3351088	+	Intron	SNP	C	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113697610	113697610	+	Intron	SNP	G	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113988400	113988400	+	Intron	SNP	A	C	C			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUL7	9820	broad.mit.edu	37	6	43007752	43007752	+	Intron	SNP	A	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CWC15	51503	broad.mit.edu	37	11	94704546	94704546	+	Silent	SNP	T	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCLRE1C	64421	broad.mit.edu	37	10	14976824	14976824	+	Intron	SNP	G	C	C			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DECR1	1666	broad.mit.edu	37	8	91056950	91056963	+	Intron	DEL	TTTTACTTACAAAG	-	-			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND5B	160518	broad.mit.edu	37	12	31566300	31566300	+	Intron	SNP	C	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKH	160851	broad.mit.edu	37	13	42784793	42784795	+	In_Frame_Del	DEL	AAC	-	-			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKK	139189	broad.mit.edu	37	X	50146951	50146951	+	Intron	SNP	G	C	C			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG2	1740	broad.mit.edu	37	11	83177818	83177818	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMBT1	1755	broad.mit.edu	37	10	124329613	124329613	+	Intron	SNP	G	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMP1	1758	broad.mit.edu	37	4	88580707	88580707	+	Intron	SNP	C	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMXL1	1657	broad.mit.edu	37	5	118574786	118574786	+	Intron	SNP	A	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH5	1767	broad.mit.edu	37	5	13868090	13868090	+	Silent	SNP	G	A	A	rs140336904		TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH8	1769	broad.mit.edu	37	6	38790595	38790595	+	Intron	SNP	T	C	C			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC12	56521	broad.mit.edu	37	10	69597639	69597639	+	Intron	SNP	T	C	C			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK3	1795	broad.mit.edu	37	3	51400017	51400017	+	Silent	SNP	G	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP4	1803	broad.mit.edu	37	2	162877214	162877214	+	Intron	SNP	G	C	C			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPPA2	151871	broad.mit.edu	37	3	109027099	109027099	+	Silent	SNP	A	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSC1	1823	broad.mit.edu	37	18	28736254	28736254	+	Intron	SNP	C	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUSP10	11221	broad.mit.edu	37	1	221875743	221875743	+	3'UTR	SNP	C	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNC1I1	1780	broad.mit.edu	37	7	95665182	95665182	+	Intron	SNP	C	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EEA1	8411	broad.mit.edu	37	12	93213295	93213295	+	Intron	SNP	G	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFCAB6	64800	broad.mit.edu	37	22	43996245	43996245	+	Intron	SNP	C	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF2AK1	27102	broad.mit.edu	37	7	6078246	6078246	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF2C3	192669	broad.mit.edu	37	1	36411406	36411406	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPP2	5168	broad.mit.edu	37	8	120606014	120606014	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPP2	5168	broad.mit.edu	37	8	120606215	120606215	+	Intron	SNP	G	C	C			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPP7	339221	broad.mit.edu	37	17	77709208	77709208	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA8	2046	broad.mit.edu	37	1	22927468	22927468	+	Silent	SNP	C	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPS15L1	58513	broad.mit.edu	37	19	16472709	16472709	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPS8L3	79574	broad.mit.edu	37	1	110293388	110293388	+	Missense_Mutation	SNP	G	A	A	rs145677992	by1000genomes	TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERBB2IP	55914	broad.mit.edu	37	5	65374203	65374203	+	Intron	SNP	A	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERC1	23085	broad.mit.edu	37	12	1553966	1553966	+	Intron	SNP	T	C	C	rs75319737	by1000genomes	TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EZR	7430	broad.mit.edu	37	6	159210525	159210526	+	Intron	INS	-	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F13A1	2162	broad.mit.edu	37	6	6197385	6197385	+	Intron	SNP	C	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM172A	83989	broad.mit.edu	37	5	93159770	93159770	+	Intron	SNP	A	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM190B	54462	broad.mit.edu	37	10	86151413	86151413	+	Intron	SNP	C	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM38B	63895	broad.mit.edu	37	18	10672859	10672859	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXL5	26234	broad.mit.edu	37	4	15642516	15642516	+	Intron	DEL	A	-	-			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FKBP9	11328	broad.mit.edu	37	7	33035693	33035693	+	Intron	SNP	G	C	C			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG2	388698	broad.mit.edu	37	1	152328427	152328427	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ39653	202020	broad.mit.edu	37	4	16257930	16257930	+	Splice_Site	SNP	G	C	C			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FNDC1	84624	broad.mit.edu	37	6	159646794	159646794	+	Intron	SNP	A	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXF2	2295	broad.mit.edu	37	6	1390695	1390695	+	Silent	SNP	C	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXK1	221937	broad.mit.edu	37	7	4780505	4780505	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXN3	1112	broad.mit.edu	37	14	89878562	89878562	+	Missense_Mutation	SNP	C	A	A	rs61754094		TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FPGT	8790	broad.mit.edu	37	1	74670318	74670318	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRAS1	80144	broad.mit.edu	37	4	79385778	79385778	+	Intron	SNP	A	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMD4A	55691	broad.mit.edu	37	10	13825085	13825085	+	Intron	SNP	G	C	C			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRY	10129	broad.mit.edu	37	13	32814025	32814025	+	Intron	DEL	T	-	-			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSCB	84075	broad.mit.edu	37	14	44975840	44975840	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT13	114805	broad.mit.edu	37	2	155157868	155157868	+	Intron	SNP	C	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GARNL3	84253	broad.mit.edu	37	9	130152916	130152916	+	Intron	SNP	C	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBP4	115361	broad.mit.edu	37	1	89654558	89654558	+	Intron	SNP	G	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCOM1	145781	broad.mit.edu	37	15	57953691	57953691	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GMIP	51291	broad.mit.edu	37	19	19747510	19747510	+	Intron	SNP	C	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOT1L1	137362	broad.mit.edu	37	8	37793280	37793281	+	Frame_Shift_Ins	INS	-	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPC5	2262	broad.mit.edu	37	13	93518808	93518808	+	3'UTR	SNP	T	C	C			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR156	165829	broad.mit.edu	37	3	119905545	119905545	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN2A	2903	broad.mit.edu	37	16	9862656	9862656	+	Intron	SNP	G	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRXCR1	389207	broad.mit.edu	37	4	42895787	42895787	+	Intron	SNP	G	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAVCR1	26762	broad.mit.edu	37	5	156479778	156479778	+	Intron	SNP	C	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR5A	25938	broad.mit.edu	37	14	31765218	31765218	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR5B	54497	broad.mit.edu	37	2	37287708	37287708	+	Intron	SNP	T	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR5B	54497	broad.mit.edu	37	2	37299194	37299194	+	Intron	SNP	C	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HGF	3082	broad.mit.edu	37	7	81334845	81334845	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIP1	3092	broad.mit.edu	37	7	75221233	75221233	+	Intron	SNP	T	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNRNPUL2	221092	broad.mit.edu	37	11	62482860	62482860	+	Intron	SNP	G	C	C			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSD17B4	3295	broad.mit.edu	37	5	118813117	118813117	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR3C	170572	broad.mit.edu	37	3	183772675	183772675	+	Silent	SNP	G	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTT	3064	broad.mit.edu	37	4	3189587	3189587	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IDH3B	3420	broad.mit.edu	37	20	2639447	2639447	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL33	90865	broad.mit.edu	37	9	6253538	6253538	+	Intron	SNP	G	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INPP5F	22876	broad.mit.edu	37	10	121579052	121579052	+	Intron	SNP	G	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INSC	387755	broad.mit.edu	37	11	15267674	15267674	+	3'UTR	SNP	C	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IPCEF1	26034	broad.mit.edu	37	6	154568540	154568540	+	Intron	SNP	C	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ISLR2	57611	broad.mit.edu	37	15	74426123	74426123	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA4	3676	broad.mit.edu	37	2	182395460	182395460	+	Intron	SNP	G	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA8	8516	broad.mit.edu	37	10	15647859	15647859	+	Intron	SNP	T	C	C			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA8	8516	broad.mit.edu	37	10	15688876	15688876	+	Silent	SNP	G	A	A	rs150699841	by1000genomes	TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAV	3685	broad.mit.edu	37	2	187519311	187519311	+	Intron	SNP	G	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAX	3687	broad.mit.edu	37	16	31391671	31391671	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH5	80760	broad.mit.edu	37	10	7627900	7627901	+	Missense_Mutation	DNP	CA	AT	AT			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAG1	182	broad.mit.edu	37	20	10622588	10622588	+	Intron	SNP	C	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAZF1	221895	broad.mit.edu	37	7	28031633	28031633	+	Intron	SNP	G	C	C			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH1	3756	broad.mit.edu	37	1	211092862	211092862	+	Intron	SNP	A	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNIP4	80333	broad.mit.edu	37	4	20731902	20731902	+	Intron	SNP	A	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNQ2	3785	broad.mit.edu	37	20	62044963	62044963	+	Intron	SNP	C	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM3B	51780	broad.mit.edu	37	5	137759816	137759816	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0776	23376	broad.mit.edu	37	6	97000501	97000501	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1033	23325	broad.mit.edu	37	12	105508114	105508114	+	Intron	SNP	T	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1109	84162	broad.mit.edu	37	4	123122203	123122203	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1211	57482	broad.mit.edu	37	4	57182422	57182422	+	Silent	SNP	G	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1529	57653	broad.mit.edu	37	9	100136920	100136920	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIDINS220	57498	broad.mit.edu	37	2	8930278	8930278	+	Intron	SNP	G	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF5A	3798	broad.mit.edu	37	12	57961078	57961078	+	Intron	SNP	T	C	C			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLK11	11012	broad.mit.edu	37	19	51527394	51527394	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KMO	8564	broad.mit.edu	37	1	241732005	241732005	+	Intron	SNP	C	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KPNA4	3840	broad.mit.edu	37	3	160243897	160243897	+	Splice_Site	SNP	T	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRAS	3845	broad.mit.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	A	A	rs121913529		TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT75	9119	broad.mit.edu	37	12	52824482	52824482	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP10-8	386681	broad.mit.edu	37	21	46032170	46032170	+	Silent	SNP	C	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCE1C	353133	broad.mit.edu	37	1	152777925	152777925	+	Silent	SNP	G	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LDLR	3949	broad.mit.edu	37	19	11227547	11227547	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LEKR1	389170	broad.mit.edu	37	3	156742693	156742693	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGALS9	3965	broad.mit.edu	37	17	25972923	25972923	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100133308	100133308	broad.mit.edu	37	10	45647013	45647013	+	Intron	SNP	G	C	C			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC654342	654342	broad.mit.edu	37	2	91809292	91809292	+	Intron	SNP	C	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPA	4018	broad.mit.edu	37	6	160952974	160952974	+	Intron	SNP	A	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN1	22859	broad.mit.edu	37	19	14273658	14273658	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRIT2	340745	broad.mit.edu	37	10	85985105	85985105	+	Intron	SNP	A	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141115623	141115624	+	Frame_Shift_Ins	INS	-	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141130658	141130658	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRK2	120892	broad.mit.edu	37	12	40734098	40734098	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTBP1	4052	broad.mit.edu	37	2	33614353	33614353	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LZTR1	8216	broad.mit.edu	37	22	21349176	21349176	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MACF1	23499	broad.mit.edu	37	1	39844653	39844653	+	Intron	SNP	T	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGI2	9863	broad.mit.edu	37	7	77764363	77764363	+	Silent	SNP	G	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGI2	9863	broad.mit.edu	37	7	77789677	77789677	+	Intron	SNP	G	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPK10	5602	broad.mit.edu	37	4	87115370	87115370	+	Intron	SNP	A	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAST2	23139	broad.mit.edu	37	1	46313003	46313003	+	Intron	SNP	C	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MATR3	9782	broad.mit.edu	37	5	138643661	138643661	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP12	4321	broad.mit.edu	37	11	102734913	102734913	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP1	4312	broad.mit.edu	37	11	102666049	102666049	+	Intron	SNP	A	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOXD1	26002	broad.mit.edu	37	6	132645331	132645331	+	Intron	SNP	A	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRO	83876	broad.mit.edu	37	18	48328079	48328079	+	Intron	SNP	G	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A10	341116	broad.mit.edu	37	11	60557990	60557990	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A6A	64231	broad.mit.edu	37	11	59940658	59940658	+	Intron	SNP	C	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A7	58475	broad.mit.edu	37	11	60157005	60157005	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTPAP	55149	broad.mit.edu	37	10	30656831	30656831	+	Intron	SNP	G	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9087721	9087721	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH11	4629	broad.mit.edu	37	16	15815539	15815539	+	Intron	SNP	C	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH4	4622	broad.mit.edu	37	17	10351894	10351894	+	Intron	SNP	C	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO10	4651	broad.mit.edu	37	5	16877805	16877805	+	Silent	SNP	G	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO19	80179	broad.mit.edu	37	17	34861146	34861146	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO1A	4640	broad.mit.edu	37	12	57430774	57430774	+	Silent	SNP	C	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO3B	140469	broad.mit.edu	37	2	171258115	171258115	+	Silent	SNP	C	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO5C	55930	broad.mit.edu	37	15	52556515	52556515	+	Intron	SNP	G	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO9A	4649	broad.mit.edu	37	15	72119337	72119337	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYT1L	23040	broad.mit.edu	37	2	1926035	1926035	+	Intron	SNP	C	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAALAD2	10003	broad.mit.edu	37	11	89902143	89902143	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NALCN	259232	broad.mit.edu	37	13	101763102	101763102	+	Intron	SNP	C	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAP1L4	4676	broad.mit.edu	37	11	2986010	2986010	+	Intron	SNP	C	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV3	89795	broad.mit.edu	37	12	78531076	78531076	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	145522506	145522506	+	Intron	SNP	T	C	C			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAPD2	9918	broad.mit.edu	37	12	6626500	6626500	+	Intron	SNP	G	C	C			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCKAP5	344148	broad.mit.edu	37	2	133489353	133489353	+	Silent	SNP	C	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFASC	23114	broad.mit.edu	37	1	204981790	204981790	+	Intron	SNP	G	C	C			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKAPL	222698	broad.mit.edu	37	6	28227729	28227729	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKD1	85407	broad.mit.edu	37	16	50667594	50667594	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP3	114548	broad.mit.edu	37	1	247586536	247586536	+	Silent	SNP	A	C	C			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOSTRIN	115677	broad.mit.edu	37	2	169718574	169718574	+	Intron	SNP	C	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPLOC4	55666	broad.mit.edu	37	17	79589368	79589368	+	Intron	SNP	C	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRF1	4899	broad.mit.edu	37	7	129367153	129367154	+	Frame_Shift_Ins	INS	-	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRG3	10718	broad.mit.edu	37	10	83635731	83635731	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN1	9378	broad.mit.edu	37	2	51254610	51254610	+	Intron	SNP	G	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP98	4928	broad.mit.edu	37	11	3722157	3722157	+	Intron	SNP	A	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ2	57451	broad.mit.edu	37	5	167642095	167642095	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OMA1	115209	broad.mit.edu	37	1	58946616	58946616	+	3'UTR	SNP	T	C	C			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10A6	390093	broad.mit.edu	37	11	7950014	7950014	+	Silent	SNP	A	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1C1	26188	broad.mit.edu	37	1	247920884	247920884	+	Silent	SNP	G	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T33	391195	broad.mit.edu	37	1	248436666	248436666	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2V2	285659	broad.mit.edu	37	5	180582009	180582009	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2Z1	284383	broad.mit.edu	37	19	8841802	8841802	+	Missense_Mutation	SNP	C	T	T	rs58741481	byFrequency;by1000genomes	TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C13	283092	broad.mit.edu	37	11	49974694	49974694	+	Silent	SNP	C	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C46	119749	broad.mit.edu	37	11	51515552	51515552	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C6	219432	broad.mit.edu	37	11	55432993	55432993	+	Silent	SNP	C	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4D10	390197	broad.mit.edu	37	11	59245745	59245746	+	Missense_Mutation	DNP	GC	TT	TT			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51F1	256892	broad.mit.edu	37	11	4791125	4791125	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52A5	390054	broad.mit.edu	37	11	5153259	5153259	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBP2	23762	broad.mit.edu	37	22	31298126	31298127	+	Intron	DEL	CC	-	-	rs56186828		TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBP2	23762	broad.mit.edu	37	22	31302178	31302178	+	Intron	SNP	C	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTC	5009	broad.mit.edu	37	X	38211915	38211915	+	Translation_Start_Site	SNP	G	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P2RY1	5028	broad.mit.edu	37	3	152553814	152553814	+	Silent	SNP	G	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAK7	57144	broad.mit.edu	37	20	9524885	9524885	+	Intron	SNP	T	C	C			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAK7	57144	broad.mit.edu	37	20	9560731	9560731	+	Intron	SNP	G	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARG	8505	broad.mit.edu	37	10	51485562	51485562	+	Intron	SNP	T	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARP14	54625	broad.mit.edu	37	3	122414253	122414253	+	Intron	DEL	T	-	-			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCBP2	5094	broad.mit.edu	37	12	53859589	53859589	+	Intron	SNP	C	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCBP2	5094	broad.mit.edu	37	12	53859816	53859816	+	Intron	SNP	C	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH18	54510	broad.mit.edu	37	4	138450846	138450846	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA2	56113	broad.mit.edu	37	5	140720282	140720282	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE6A	5145	broad.mit.edu	37	5	149277824	149277825	+	Intron	DNP	CC	AA	AA			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDGFRA	5156	broad.mit.edu	37	4	54364790	54364790	+	Intron	SNP	C	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PFKM	5213	broad.mit.edu	37	12	48535581	48535581	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGAP1	80055	broad.mit.edu	37	2	197738346	197738346	+	Intron	SNP	T	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHACTR1	221692	broad.mit.edu	37	6	13228216	13228216	+	Silent	SNP	C	T	T	rs139729794	by1000genomes	TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIWIL1	9271	broad.mit.edu	37	12	130832712	130832712	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1L1	93035	broad.mit.edu	37	8	110455274	110455274	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLAA	9373	broad.mit.edu	37	9	26910306	26910306	+	Intron	SNP	T	C	C			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHG5	57449	broad.mit.edu	37	1	6529654	6529654	+	Missense_Mutation	SNP	C	T	T	rs144245744		TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLG	5340	broad.mit.edu	37	6	161123295	161123295	+	5'UTR	SNP	G	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PMFBP1	83449	broad.mit.edu	37	16	72158693	72158693	+	Silent	SNP	T	C	C			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLD3	10714	broad.mit.edu	37	11	74345735	74345735	+	Missense_Mutation	SNP	G	A	A	rs137901782	byFrequency;by1000genomes	TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR2B	5431	broad.mit.edu	37	4	57890152	57890152	+	Intron	SNP	T	C	C			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POMT2	29954	broad.mit.edu	37	14	77765665	77765665	+	Intron	SNP	G	C	C			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POMT2	29954	broad.mit.edu	37	14	77769182	77769182	+	Missense_Mutation	SNP	C	A	A	rs140785104	byFrequency	TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEH	23784	broad.mit.edu	37	22	16266963	16266963	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPCDC	60490	broad.mit.edu	37	15	75340919	75340919	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPFIA2	8499	broad.mit.edu	37	12	81769547	81769547	+	Intron	SNP	G	C	C			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPIL2	23759	broad.mit.edu	37	22	22037369	22037369	+	Intron	SNP	G	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R16B	26051	broad.mit.edu	37	20	37518398	37518398	+	Intron	SNP	C	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP3CA	5530	broad.mit.edu	37	4	101984526	101984526	+	Intron	SNP	C	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM9	56979	broad.mit.edu	37	5	23526760	23526760	+	Silent	SNP	T	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX1	57580	broad.mit.edu	37	20	47296038	47296038	+	Intron	SNP	C	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX1	57580	broad.mit.edu	37	20	47342792	47342792	+	Intron	SNP	A	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKAA2	5563	broad.mit.edu	37	1	57158028	57158028	+	Intron	SNP	T	C	C			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKD1	5587	broad.mit.edu	37	14	30100286	30100286	+	Intron	SNP	A	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKD1	5587	broad.mit.edu	37	14	30133126	30133126	+	Intron	SNP	T	C	C			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PROX1	5629	broad.mit.edu	37	1	214171712	214171712	+	Intron	SNP	G	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRR5-ARHGAP8	553158	broad.mit.edu	37	22	45258349	45258349	+	Silent	SNP	G	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG7	5676	broad.mit.edu	37	19	43430703	43430703	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN11	5781	broad.mit.edu	37	12	112939963	112939963	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRA	5786	broad.mit.edu	37	20	2968709	2968709	+	3'UTR	SNP	T	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRA	5786	broad.mit.edu	37	20	2968983	2968983	+	Splice_Site	SNP	G	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8748148	8748148	+	Intron	SNP	C	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTTG3P	26255	broad.mit.edu	37	8	67679876	67679876	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PURG	29942	broad.mit.edu	37	8	30889679	30889679	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB27B	5874	broad.mit.edu	37	18	52556570	52556570	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB38	23682	broad.mit.edu	37	11	87908545	87908545	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RACGAP1	29127	broad.mit.edu	37	12	50384426	50384426	+	Intron	SNP	G	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALYL	138046	broad.mit.edu	37	8	85800068	85800068	+	Intron	SNP	C	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAPGEF4	11069	broad.mit.edu	37	2	173787114	173787114	+	Intron	SNP	C	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RARB	5915	broad.mit.edu	37	3	25215902	25215902	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASGEF1A	221002	broad.mit.edu	37	10	43696229	43696229	+	Silent	SNP	C	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM34	23029	broad.mit.edu	37	1	235316089	235316089	+	Intron	DEL	A	-	-			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM46	166863	broad.mit.edu	37	4	155748915	155748915	+	Intron	SNP	A	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBP5	83758	broad.mit.edu	37	12	7277511	7277511	+	Intron	SNP	G	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBP5	83758	broad.mit.edu	37	12	7277513	7277513	+	Intron	SNP	G	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG1P	5969	broad.mit.edu	37	2	79363907	79363907	+	RNA	SNP	C	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RERE	473	broad.mit.edu	37	1	8416207	8416207	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFWD3	55159	broad.mit.edu	37	16	74683196	74683196	+	Intron	SNP	A	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS21	431704	broad.mit.edu	37	1	192312099	192312099	+	Intron	SNP	A	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF144A	9781	broad.mit.edu	37	2	7164554	7164554	+	Silent	SNP	C	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS6KA2	6196	broad.mit.edu	37	6	166923854	166923854	+	Intron	SNP	T	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RREB1	6239	broad.mit.edu	37	6	7229614	7229614	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR1	6261	broad.mit.edu	37	19	38958369	38958369	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	34117697	34117697	+	Intron	SNP	G	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCAI	286205	broad.mit.edu	37	9	127781276	127781276	+	Intron	SNP	T	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEL1L	6400	broad.mit.edu	37	14	81943369	81943369	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SELV	348303	broad.mit.edu	37	19	40009752	40009752	+	Silent	SNP	T	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA3C	10512	broad.mit.edu	37	7	80435147	80435147	+	Intron	SNP	T	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA3D	223117	broad.mit.edu	37	7	84671682	84671682	+	Intron	SNP	G	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA6C	10500	broad.mit.edu	37	1	151111935	151111935	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINA3	12	broad.mit.edu	37	14	95081053	95081053	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB2	5055	broad.mit.edu	37	18	61569627	61569627	+	Intron	SNP	A	C	C			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB4	6318	broad.mit.edu	37	18	61324185	61324185	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB5	5268	broad.mit.edu	37	18	61170631	61170631	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SILV	6490	broad.mit.edu	37	12	56352098	56352098	+	Intron	SNP	A	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164758796	164758796	+	Silent	SNP	G	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SKAP2	8935	broad.mit.edu	37	7	26730005	26730005	+	Intron	SNP	C	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A7	57030	broad.mit.edu	37	19	49937127	49937128	+	Splice_Site	INS	-	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A23	79085	broad.mit.edu	37	19	6441955	6441955	+	3'UTR	SNP	T	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A7	115111	broad.mit.edu	37	8	92307874	92307874	+	Silent	SNP	T	C	C			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC34A1	6569	broad.mit.edu	37	5	176815190	176815190	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC40A1	30061	broad.mit.edu	37	2	190444474	190444474	+	Intron	SNP	T	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC44A5	204962	broad.mit.edu	37	1	75680262	75680262	+	Intron	SNP	A	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC44A5	204962	broad.mit.edu	37	1	75707844	75707844	+	Intron	SNP	A	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC44A5	204962	broad.mit.edu	37	1	75716951	75716951	+	Silent	SNP	G	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC47A2	146802	broad.mit.edu	37	17	19607464	19607464	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A11	83959	broad.mit.edu	37	20	3214930	3214930	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A5	57835	broad.mit.edu	37	2	74477526	74477526	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A9	200010	broad.mit.edu	37	1	48703325	48703325	+	Intron	SNP	T	C	C			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A11	6538	broad.mit.edu	37	3	10858238	10858238	+	Intron	SNP	C	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A2	6530	broad.mit.edu	37	16	55730216	55730216	+	Silent	SNP	C	T	T	rs149035289		TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT2	9353	broad.mit.edu	37	4	20618936	20618936	+	Intron	SNP	G	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT3	6586	broad.mit.edu	37	5	168233477	168233477	+	Silent	SNP	G	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK1	114798	broad.mit.edu	37	13	84455261	84455261	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMC4	10051	broad.mit.edu	37	3	160120513	160120513	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMNDC1	10285	broad.mit.edu	37	10	112057270	112057270	+	Intron	SNP	C	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMOC1	64093	broad.mit.edu	37	14	70420144	70420144	+	Silent	SNP	C	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX29	92017	broad.mit.edu	37	16	12162866	12162866	+	Intron	SNP	A	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOS1	6654	broad.mit.edu	37	2	39240990	39240990	+	Intron	SNP	C	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA18	132671	broad.mit.edu	37	4	52943204	52943204	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA1	64173	broad.mit.edu	37	1	84999387	84999387	+	Intron	SNP	T	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158597593	158597593	+	Intron	SNP	A	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158622997	158622997	+	Intron	SNP	G	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTAN1	6709	broad.mit.edu	37	9	131361377	131361377	+	Intron	SNP	G	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTBN2	6712	broad.mit.edu	37	11	66460364	66460364	+	Intron	SNP	G	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTLC3	55304	broad.mit.edu	37	20	13140862	13140862	+	Intron	SNP	T	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STIM1	6786	broad.mit.edu	37	11	4076753	4076753	+	Intron	SNP	C	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK17B	9262	broad.mit.edu	37	2	197002250	197002250	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK33	65975	broad.mit.edu	37	11	8435335	8435335	+	Intron	SNP	T	C	C			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STX1B	112755	broad.mit.edu	37	16	31008314	31008314	+	Silent	SNP	G	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUV420H1	51111	broad.mit.edu	37	11	67939111	67939111	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SVEP1	79987	broad.mit.edu	37	9	113163144	113163144	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYBU	55638	broad.mit.edu	37	8	110598224	110598224	+	Intron	SNP	T	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAC1	6863	broad.mit.edu	37	7	97362158	97362158	+	Intron	SNP	G	C	C			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D15	64786	broad.mit.edu	37	12	72289716	72289716	+	Intron	SNP	C	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX18	9096	broad.mit.edu	37	6	85466432	85466432	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFAP2A	7020	broad.mit.edu	37	6	10419585	10419585	+	Intron	SNP	G	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGFA	7039	broad.mit.edu	37	2	70741944	70741944	+	Intron	SNP	G	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THEG	51298	broad.mit.edu	37	19	367181	367181	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THNSL1	79896	broad.mit.edu	37	10	25313016	25313016	+	Silent	SNP	C	T	T	rs150015345		TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLE1	7088	broad.mit.edu	37	9	84300860	84300860	+	Intron	SNP	T	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLE2	7089	broad.mit.edu	37	19	3028869	3028869	+	Intron	SNP	C	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLR4	7099	broad.mit.edu	37	9	120471118	120471118	+	Intron	SNP	C	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132E	124842	broad.mit.edu	37	17	32964224	32964224	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM195	392636	broad.mit.edu	37	7	15240864	15240864	+	3'UTR	SNP	C	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM202	338949	broad.mit.edu	37	15	72700151	72700151	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM49	81671	broad.mit.edu	37	17	57917156	57917156	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM62	80021	broad.mit.edu	37	15	43427706	43427706	+	Intron	SNP	A	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMTC2	160335	broad.mit.edu	37	12	83251423	83251423	+	Intron	SNP	A	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNNI3K	51086	broad.mit.edu	37	1	74801868	74801868	+	Intron	SNP	T	C	C			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNXB	7148	broad.mit.edu	37	6	32050187	32050187	+	Intron	SNP	A	C	C			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOM1L2	146691	broad.mit.edu	37	17	17782831	17782831	+	Intron	SNP	G	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOX2	84969	broad.mit.edu	37	20	42697233	42697233	+	Intron	SNP	C	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAF5	7188	broad.mit.edu	37	1	211529716	211529716	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM23	373	broad.mit.edu	37	5	64920031	64920031	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM58	25893	broad.mit.edu	37	1	248028109	248028109	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPS1	7227	broad.mit.edu	37	8	116616126	116616126	+	Silent	SNP	C	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHZ1	10194	broad.mit.edu	37	18	73000614	73000614	+	3'UTR	SNP	G	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSSK1B	83942	broad.mit.edu	37	5	112769609	112769609	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC7B	145567	broad.mit.edu	37	14	91121558	91121558	+	Intron	SNP	G	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTF2	8458	broad.mit.edu	37	1	117638684	117638684	+	Intron	SNP	C	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTLL3	26140	broad.mit.edu	37	3	9877074	9877074	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179393630	179393630	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179479523	179479523	+	Intron	SNP	A	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179616666	179616666	+	Silent	SNP	T	C	C			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TULP4	56995	broad.mit.edu	37	6	158870115	158870115	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TXK	7294	broad.mit.edu	37	4	48136268	48136268	+	5'UTR	SNP	G	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2B28	54490	broad.mit.edu	37	4	70152596	70152596	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2B7	7364	broad.mit.edu	37	4	69962880	69962880	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC13C	440279	broad.mit.edu	37	15	54707113	54707113	+	Intron	SNP	A	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC13C	440279	broad.mit.edu	37	15	54793050	54793050	+	Silent	SNP	G	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216375039	216375039	+	Intron	SNP	C	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216462837	216462837	+	Intron	SNP	G	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP34	9736	broad.mit.edu	37	2	61577741	61577741	+	Silent	SNP	G	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP51	158880	broad.mit.edu	37	X	55513782	55513782	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UXS1	80146	broad.mit.edu	37	2	106761572	106761572	+	Intron	SNP	C	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	19026652	19026652	+	IGR	SNP	G	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	121232678	121232678	+	IGR	SNP	G	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	18210885	18210885	+	IGR	SNP	C	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55059617	55059617	+	IGR	SNP	T	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	56143191	56143191	+	IGR	SNP	T	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	56216612	56216612	+	IGR	SNP	G	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	30378422	30378422	+	IGR	SNP	C	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	38597458	38597458	+	IGR	SNP	G	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	64215984	64215984	+	IGR	SNP	G	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	115072509	115072509	+	IGR	SNP	C	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	59103948	59103948	+	IGR	SNP	A	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19118089	19118089	+	IGR	SNP	G	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19476055	19476055	+	IGR	SNP	T	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	24219996	24219996	+	IGR	SNP	G	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	28752014	28752014	+	IGR	DEL	T	-	-			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	60257822	60257822	+	IGR	SNP	C	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34641567	34641567	+	IGR	SNP	G	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34648797	34648797	+	IGR	SNP	G	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	28898252	28898252	+	IGR	SNP	G	C	C			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	49580539	49580539	+	IGR	SNP	T	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	6563369	6563369	+	IGR	SNP	C	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	57817639	57817639	+	IGR	SNP	T	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	16101039	16101039	+	IGR	SNP	C	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	55207795	55207795	+	IGR	SNP	G	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	148903275	148903275	+	IGR	SNP	G	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	77166062	77166062	+	IGR	SNP	G	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	79521467	79521467	+	IGR	SNP	C	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	10315394	10315394	+	IGR	SNP	C	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	32802716	32802716	+	IGR	SNP	G	C	C			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	32803246	32803246	+	IGR	SNP	G	C	C			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	17402663	17402663	+	IGR	SNP	G	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	106986333	106986333	+	IGR	SNP	G	C	C			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	171739440	171739440	+	IGR	SNP	A	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	173020850	173020850	+	IGR	SNP	C	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	34065014	34065014	+	IGR	SNP	G	C	C			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91800632	91800632	+	IGR	SNP	G	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	92150213	92150213	+	IGR	SNP	A	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	109635102	109635102	+	IGR	SNP	C	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	88998800	88998800	+	IGR	SNP	T	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	96285786	96285786	+	IGR	SNP	C	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	97941037	97941037	+	IGR	SNP	C	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	134630306	134630306	+	IGR	SNP	C	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	139482872	139482872	+	IGR	SNP	A	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	43390212	43390212	+	IGR	SNP	T	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	122972277	122972277	+	IGR	SNP	T	C	C			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	165209896	165209896	+	IGR	SNP	C	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	165209960	165209960	+	IGR	SNP	G	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	96392540	96392540	+	IGR	SNP	A	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	66547353	66547353	+	IGR	SNP	C	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	66547418	66547418	+	IGR	SNP	G	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	108634698	108634698	+	IGR	SNP	C	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56356633	56356633	+	IGR	SNP	G	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	38527704	38527704	+	IGR	SNP	G	A	A	rs143706700	by1000genomes	TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	155058753	155058753	+	IGR	SNP	C	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	48014063	48014063	+	IGR	SNP	A	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	64628157	64628157	+	IGR	SNP	C	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	17019865	17019865	+	IGR	SNP	C	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VCPIP1	80124	broad.mit.edu	37	8	67579088	67579089	+	Frame_Shift_Ins	INS	-	C	C			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VDAC3	7419	broad.mit.edu	37	8	42252586	42252586	+	Intron	SNP	G	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VN1R2	317701	broad.mit.edu	37	19	53761893	53761893	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VRK3	51231	broad.mit.edu	37	19	50512282	50512282	+	Intron	SNP	G	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWA3B	200403	broad.mit.edu	37	2	98737721	98737721	+	Intron	SNP	C	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWF	7450	broad.mit.edu	37	12	6145657	6145657	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNK1	65125	broad.mit.edu	37	12	990831	990831	+	Intron	SNP	G	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNK1	65125	broad.mit.edu	37	12	990843	990843	+	Intron	SNP	C	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WRN	7486	broad.mit.edu	37	8	30973742	30973742	+	Intron	SNP	G	C	C			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XRN2	22803	broad.mit.edu	37	20	21321220	21321220	+	Intron	SNP	A	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XYLB	9942	broad.mit.edu	37	3	38409663	38409663	+	Intron	SNP	C	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XYLT1	64131	broad.mit.edu	37	16	17228543	17228543	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YTHDC1	91746	broad.mit.edu	37	4	69203448	69203448	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB20	26137	broad.mit.edu	37	3	114070151	114070151	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB46	140685	broad.mit.edu	37	20	62407080	62407080	+	Silent	SNP	G	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFP14	57677	broad.mit.edu	37	19	36831147	36831147	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFYVE16	9765	broad.mit.edu	37	5	79753039	79753039	+	Intron	SNP	A	C	C			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF449	203523	broad.mit.edu	37	X	134494331	134494331	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF532	55205	broad.mit.edu	37	18	56620951	56620951	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF540	163255	broad.mit.edu	37	19	38102901	38102901	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF616	90317	broad.mit.edu	37	19	52620309	52620309	+	Intron	SNP	T	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF679	168417	broad.mit.edu	37	7	63720645	63720645	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF714	148206	broad.mit.edu	37	19	21281751	21281751	+	Intron	SNP	G	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZSCAN4	201516	broad.mit.edu	37	19	58190008	58190008	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	51807997	51807997	+	RNA	SNP	T	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	76084796	76084796	+	5'Flank	SNP	C	T	T			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90085896	90085896	+	Intron	SNP	C	A	A			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142378550	142378550	+	Intron	SNP	C	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142378626	142378626	+	Intron	SNP	C	G	G			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
