Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
C1orf201	90529	broad.mit.edu	36	1	24572784	24572784	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	24572784	24572784	C1orf201	1	G	G	A	43
SLC1A7	6512	broad.mit.edu	36	1	53328074	53328074	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	53328074	53328074	SLC1A7	1	G	G	C	39
S1PR1	1901	broad.mit.edu	36	1	101477260	101477260	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10			C	A	C	C	Unknown	Valid	Somatic	x	x	454_PCR_WGA			x	Broad	Missense_Mutation	SNP	101477260	101477260	S1PR1	1	C	C	A	25
CELSR2	1952	broad.mit.edu	36	1	109594631	109594631	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	109594631	109594631	CELSR2	1	C	C	A	23
ADAM30	11085	broad.mit.edu	36	1	120239173	120239173	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	120239173	120239173	ADAM30	1	G	G	C	42
C1orf56	54964	broad.mit.edu	36	1	149287040	149287040	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	149287040	149287040	C1orf56	1	C	C	G	23
FLG2	388698	broad.mit.edu	36	1	150590300	150590300	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	150590300	150590300	FLG2	1	G	G	T	48
FLAD1	80308	broad.mit.edu	36	1	153229299	153229299	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10			A	C	A	A	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	153229299	153229299	FLAD1	1	A	A	C	16
FAM189B	10712	broad.mit.edu	36	1	153484651	153484651	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	153484651	153484651	FAM189B	1	C	C	G	18
GON4L	54856	broad.mit.edu	36	1	154002179	154002179	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	154002179	154002179	GON4L	1	C	C	T	29
NTRK1	4914	broad.mit.edu	36	1	155115677	155115677	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10			C	T	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	155115677	155115677	NTRK1	1	C	C	T	23
NUAK2	81788	broad.mit.edu	36	1	203539966	203539966	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10			G	C	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Silent	SNP	203539966	203539966	NUAK2	1	G	G	C	45
MIA3	375056	broad.mit.edu	36	1	220905509	220905509	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	220905509	220905509	MIA3	1	C	C	T	28
URB2	9816	broad.mit.edu	36	1	227839846	227839846	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10			G	A	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	227839846	227839846	URB2	1	G	G	A	43
LYST	1130	broad.mit.edu	36	1	234038960	234038960	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	234038960	234038960	LYST	1	G	G	T	35
PLD5	200150	broad.mit.edu	36	1	240330665	240330665	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	240330665	240330665	PLD5	1	C	C	G	32
OR2T12	127064	broad.mit.edu	36	1	246525061	246525061	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	246525061	246525061	OR2T12	1	A	A	T	11
ZNF25	219749	broad.mit.edu	36	10	38281644	38281644	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	38281644	38281644	ZNF25	10	C	C	G	17
RET	5979	broad.mit.edu	36	10	42926708	42926708	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10			C	T	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Silent	SNP	42926708	42926708	RET	10	C	C	T	19
PRKG1	5592	broad.mit.edu	36	10	53492301	53492301	+	Splice_Site_SNP	SNP	A	A	T	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10			A	T	A	A	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Splice_Site_SNP	SNP	53492301	53492301	PRKG1	10	A	A	T	7
EGR2	1959	broad.mit.edu	36	10	64243747	64243747	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10			G	C	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Silent	SNP	64243747	64243747	EGR2	10	G	G	C	33
MGEA5	10724	broad.mit.edu	36	10	103540644	103540644	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	103540644	103540644	MGEA5	10	T	T	A	54
DHX32	55760	broad.mit.edu	36	10	127516868	127516868	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10			C	A	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	127516868	127516868	DHX32	10	C	C	A	21
MUC2	4583	broad.mit.edu	36	11	1082891	1082891	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	1082891	1082891	MUC2	11	C	C	A	22
PAX6	5080	broad.mit.edu	36	11	31772909	31772909	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	31772909	31772909	PAX6	11	C	C	A	26
OR5T1	390155	broad.mit.edu	36	11	55800656	55800656	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	55800656	55800656	OR5T1	11	C	C	T	29
FAM111B	374393	broad.mit.edu	36	11	58649831	58649831	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	58649831	58649831	FAM111B	11	G	G	A	47
MS4A5	64232	broad.mit.edu	36	11	59957856	59957856	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	59957856	59957856	MS4A5	11	G	G	A	34
GANAB	23193	broad.mit.edu	36	11	62154461	62154461	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10			C	G	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Silent	SNP	62154461	62154461	GANAB	11	C	C	G	22
LGALS12	85329	broad.mit.edu	36	11	63032877	63032877	+	Silent	SNP	C	C	A	rs12289952	byHapMap	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	63032877	63032877	LGALS12	11	C	C	A	31
CDC42BPG	55561	broad.mit.edu	36	11	64358982	64358982	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	64358982	64358982	CDC42BPG	11	T	T	C	57
SF3B2	10992	broad.mit.edu	36	11	65584674	65584674	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	65584674	65584674	SF3B2	11	C	C	T	26
SYTL2	54843	broad.mit.edu	36	11	85123119	85123119	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	85123119	85123119	SYTL2	11	C	C	G	17
DYNC2H1	79659	broad.mit.edu	36	11	102575379	102575379	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	102575379	102575379	DYNC2H1	11	A	A	G	12
DCPS	28960	broad.mit.edu	36	11	125720539	125720539	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	125720539	125720539	DCPS	11	C	C	A	25
NCAPD2	9918	broad.mit.edu	36	12	6505594	6505594	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	6505594	6505594	NCAPD2	12	C	C	T	26
APOLD1	81575	broad.mit.edu	36	12	12831529	12831529	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	12831529	12831529	APOLD1	12	C	C	G	32
PIK3C2G	5288	broad.mit.edu	36	12	18549513	18549513	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10			C	T	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Silent	SNP	18549513	18549513	PIK3C2G	12	C	C	T	20
IRAK4	51135	broad.mit.edu	36	12	42448338	42448338	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10			A	G	A	A	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	42448338	42448338	IRAK4	12	A	A	G	8
C12orf51	283450	broad.mit.edu	36	12	111090030	111090030	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	111090030	111090030	C12orf51	12	A	A	C	6
TBX5	6910	broad.mit.edu	36	12	113278154	113278154	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	113278154	113278154	TBX5	12	G	G	A	38
CIT	11113	broad.mit.edu	36	12	118619990	118619990	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10			C	T	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Silent	SNP	118619990	118619990	CIT	12	C	C	T	27
UBAC2	337867	broad.mit.edu	36	13	98764371	98764371	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10			C	G	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	98764371	98764371	UBAC2	13	C	C	G	32
G2E3	55632	broad.mit.edu	36	14	30151266	30151266	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	30151266	30151266	G2E3	14	G	G	A	45
ITPK1	3705	broad.mit.edu	36	14	92494301	92494301	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10			G	A	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	92494301	92494301	ITPK1	14	G	G	A	45
EVL	51466	broad.mit.edu	36	14	99673694	99673694	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	99673694	99673694	EVL	14	A	A	T	11
PLA2G4F	255189	broad.mit.edu	36	15	40229338	40229338	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	40229338	40229338	PLA2G4F	15	G	G	T	34
FOXB1	27023	broad.mit.edu	36	15	58084968	58084968	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	58084968	58084968	FOXB1	15	A	A	T	8
UBE2Q2	92912	broad.mit.edu	36	15	73978838	73978838	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	73978838	73978838	UBE2Q2	15	C	C	G	21
UNC45A	55898	broad.mit.edu	36	15	89293649	89293649	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	89293649	89293649	UNC45A	15	A	A	G	10
KIFC3	3801	broad.mit.edu	36	16	56357032	56357032	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	56357032	56357032	KIFC3	16	C	C	T	19
PLEKHG4	25894	broad.mit.edu	36	16	65871480	65871480	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	65871480	65871480	PLEKHG4	16	C	C	T	30
ZFP1	162239	broad.mit.edu	36	16	73761359	73761359	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	73761359	73761359	ZFP1	16	A	A	T	6
TP53	7157	broad.mit.edu	36	17	7519221	7519221	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	7519221	7519221	TP53	17	A	A	C	7
GLP2R	9340	broad.mit.edu	36	17	9731991	9731991	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	9731991	9731991	GLP2R	17	G	G	A	46
KIAA0100	9703	broad.mit.edu	36	17	23986322	23986322	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	23986322	23986322	KIAA0100	17	T	T	A	62
ITGB3	3690	broad.mit.edu	36	17	42724773	42724773	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10			C	T	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Silent	SNP	42724773	42724773	ITGB3	17	C	C	T	19
BZRAP1	9256	broad.mit.edu	36	17	53737957	53737957	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	53737957	53737957	BZRAP1	17	G	G	C	47
EPB41L3	23136	broad.mit.edu	36	18	5396870	5396870	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10			G	A	G	G	Unknown	Valid	Somatic	x	x	454_PCR_WGA			x	Broad	Missense_Mutation	SNP	5396870	5396870	EPB41L3	18	G	G	A	40
TRAPPC8	22878	broad.mit.edu	36	18	27689653	27689653	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	27689653	27689653	TRAPPC8	18	G	G	C	34
SOCS6	9306	broad.mit.edu	36	18	66143303	66143303	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10			G	A	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	66143303	66143303	SOCS6	18	G	G	A	39
REEP6	92840	broad.mit.edu	36	19	1447361	1447361	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	1447361	1447361	REEP6	19	G	G	T	38
MAP2K2	5605	broad.mit.edu	36	19	4068604	4068604	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	4068604	4068604	MAP2K2	19	T	T	A	56
DOCK6	57572	broad.mit.edu	36	19	11172116	11172116	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	11172116	11172116	DOCK6	19	G	G	T	42
ASF1B	55723	broad.mit.edu	36	19	14093358	14093358	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10			G	A	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	14093358	14093358	ASF1B	19	G	G	A	42
COPE	11316	broad.mit.edu	36	19	18891111	18891111	+	Missense_Mutation	SNP	A	A	C	rs11537888	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	18891111	18891111	COPE	19	A	A	C	14
HPN	3249	broad.mit.edu	36	19	40248371	40248371	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10			C	G	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	40248371	40248371	HPN	19	C	C	G	29
THAP8	199745	broad.mit.edu	36	19	41222196	41222196	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	41222196	41222196	THAP8	19	G	G	T	46
SPTBN4	57731	broad.mit.edu	36	19	45695272	45695272	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	45695272	45695272	SPTBN4	19	C	C	T	21
SCAF1	58506	broad.mit.edu	36	19	54846138	54846138	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	54846138	54846138	SCAF1	19	T	T	A	50
FPR3	2359	broad.mit.edu	36	19	57019316	57019316	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	57019316	57019316	FPR3	19	G	G	T	36
ZNF132	7691	broad.mit.edu	36	19	63636598	63636598	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	63636598	63636598	ZNF132	19	T	T	G	56
VSNL1	7447	broad.mit.edu	36	2	17636864	17636864	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10			G	T	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	17636864	17636864	VSNL1	2	G	G	T	35
LAPTM4A	9741	broad.mit.edu	36	2	20104232	20104232	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	20104232	20104232	LAPTM4A	2	T	T	G	52
DPYSL5	56896	broad.mit.edu	36	2	27003805	27003805	+	Splice_Site_SNP	SNP	G	G	A	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Splice_Site_SNP	SNP	27003805	27003805	DPYSL5	2	G	G	A	42
ALK	238	broad.mit.edu	36	2	29299735	29299735	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10			C	T	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Silent	SNP	29299735	29299735	ALK	2	C	C	T	27
USP34	9736	broad.mit.edu	36	2	61392182	61392182	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10			G	A	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	61392182	61392182	USP34	2	G	G	A	41
ADRA2B	151	broad.mit.edu	36	2	96145134	96145134	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	96145134	96145134	ADRA2B	2	C	C	T	27
CSRNP3	80034	broad.mit.edu	36	2	166222658	166222658	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	166222658	166222658	CSRNP3	2	G	G	A	38
TTN	7273	broad.mit.edu	36	2	179205742	179205742	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	179205742	179205742	TTN	2	T	T	C	59
TTN	7273	broad.mit.edu	36	2	179320783	179320783	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10			A	T	A	A	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Silent	SNP	179320783	179320783	TTN	2	A	A	T	9
NBEAL1	65065	broad.mit.edu	36	2	203709031	203709031	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	203709031	203709031	NBEAL1	2	G	G	C	45
C2orf67	151050	broad.mit.edu	36	2	210601925	210601925	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	210601925	210601925	C2orf67	2	C	C	T	23
PROKR2	128674	broad.mit.edu	36	20	5242763	5242763	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	5242763	5242763	PROKR2	20	G	G	A	38
PLCB1	23236	broad.mit.edu	36	20	8653336	8653336	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	8653336	8653336	PLCB1	20	G	G	A	33
ZGPAT	84619	broad.mit.edu	36	20	61810451	61810451	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	61810451	61810451	ZGPAT	20	C	C	A	27
TMPRSS15	5651	broad.mit.edu	36	21	18647201	18647201	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10			C	A	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	18647201	18647201	TMPRSS15	21	C	C	A	17
MORC3	23515	broad.mit.edu	36	21	36658405	36658405	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	36658405	36658405	MORC3	21	C	C	G	29
CRYAA	1409	broad.mit.edu	36	21	43462450	43462450	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	43462450	43462450	CRYAA	21	G	G	C	41
GAB4	128954	broad.mit.edu	36	22	15825730	15825730	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	15825730	15825730	GAB4	22	A	A	T	11
PI4KA	5297	broad.mit.edu	36	22	19412084	19412084	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10			C	T	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	19412084	19412084	PI4KA	22	C	C	T	20
RAB36	9609	broad.mit.edu	36	22	21822252	21822252	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10			G	A	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Nonsense_Mutation	SNP	21822252	21822252	RAB36	22	G	G	A	44
GRAMD1C	54762	broad.mit.edu	36	3	115117258	115117258	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	115117258	115117258	GRAMD1C	3	C	C	G	32
ARHGAP31	57514	broad.mit.edu	36	3	120595050	120595050	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	120595050	120595050	ARHGAP31	3	C	C	T	24
C3orf15	89876	broad.mit.edu	36	3	120917218	120917218	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	120917218	120917218	C3orf15	3	C	C	T	25
CASR	846	broad.mit.edu	36	3	123485524	123485524	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	123485524	123485524	CASR	3	G	G	A	38
MCM2	4171	broad.mit.edu	36	3	128807766	128807766	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10			C	A	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Silent	SNP	128807766	128807766	MCM2	3	C	C	A	22
AMOTL2	51421	broad.mit.edu	36	3	135572745	135572745	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	135572745	135572745	AMOTL2	3	G	G	T	43
SLC9A9	285195	broad.mit.edu	36	3	144468407	144468407	+	Missense_Mutation	SNP	T	T	G	rs2289491	byCluster;byFrequency;bySubmitter;byHapMap	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	144468407	144468407	SLC9A9	3	T	T	G	51
MUC4	4585	broad.mit.edu	36	3	196977572	196977572	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	196977572	196977572	MUC4	3	C	C	A	29
TADA2B	93624	broad.mit.edu	36	4	7107290	7107291	+	Missense_Mutation	DNP	CT	CT	AG	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	DNP	7107290	7107291	TADA2B	4	CT	CT	AG	20
COL25A1	84570	broad.mit.edu	36	4	110003986	110003986	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	110003986	110003986	COL25A1	4	G	G	A	40
ADAMTS12	81792	broad.mit.edu	36	5	33679330	33679330	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	33679330	33679330	ADAMTS12	5	G	G	C	40
PCDHB2	56133	broad.mit.edu	36	5	140454591	140454591	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10			G	T	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Silent	SNP	140454591	140454591	PCDHB2	5	G	G	T	37
FAT2	2196	broad.mit.edu	36	5	150900507	150900507	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	150900507	150900507	FAT2	5	G	G	T	43
SH3PXD2B	285590	broad.mit.edu	36	5	171698702	171698702	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	171698702	171698702	SH3PXD2B	5	C	C	G	24
HIST1H3C	8352	broad.mit.edu	36	6	26153624	26153624	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	26153624	26153624	HIST1H3C	6	C	C	G	31
HIST1H1C	3006	broad.mit.edu	36	6	26164309	26164309	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	26164309	26164309	HIST1H1C	6	C	C	G	32
ZKSCAN4	387032	broad.mit.edu	36	6	28320943	28320943	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	28320943	28320943	ZKSCAN4	6	C	C	G	18
MRPS18B	28973	broad.mit.edu	36	6	30698627	30698627	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	30698627	30698627	MRPS18B	6	G	G	T	43
C6orf48	50854	broad.mit.edu	36	6	31913162	31913162	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	31913162	31913162	C6orf48	6	G	G	C	33
TCTE1	202500	broad.mit.edu	36	6	44362100	44362100	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	44362100	44362100	TCTE1	6	C	C	T	25
GPR110	266977	broad.mit.edu	36	6	47085986	47085986	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	47085986	47085986	GPR110	6	G	G	A	35
TINAG	27283	broad.mit.edu	36	6	54320270	54320270	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	54320270	54320270	TINAG	6	C	C	T	19
ZNF292	23036	broad.mit.edu	36	6	88023857	88023857	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	88023857	88023857	ZNF292	6	C	C	T	24
MDN1	23195	broad.mit.edu	36	6	90442620	90442620	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	90442620	90442620	MDN1	6	C	C	G	22
TNRC18B	84629	broad.mit.edu	36	7	5383118	5383118	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	5383118	5383118	TNRC18B	7	C	C	T	26
RSPH10B	222967	broad.mit.edu	36	7	5949590	5949590	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	5949590	5949590	RSPH10B	7	A	A	C	8
OGDH	4967	broad.mit.edu	36	7	44702654	44702654	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	44702654	44702654	OGDH	7	C	C	T	26
ADAM22	53616	broad.mit.edu	36	7	87598675	87598675	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10			T	C	T	T	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Silent	SNP	87598675	87598675	ADAM22	7	T	T	C	62
MOSPD3	64598	broad.mit.edu	36	7	100050739	100050739	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	100050739	100050739	MOSPD3	7	C	C	G	24
ZAN	7455	broad.mit.edu	36	7	100215053	100215053	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	100215053	100215053	ZAN	7	G	G	T	41
MGAM	8972	broad.mit.edu	36	7	141368668	141368668	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10			A	G	A	A	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	141368668	141368668	MGAM	7	A	A	G	3
KRBA1	84626	broad.mit.edu	36	7	149049527	149049527	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	149049527	149049527	KRBA1	7	G	G	C	44
BIN3	55909	broad.mit.edu	36	8	22537732	22537732	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	22537732	22537732	BIN3	8	T	T	C	54
PURG	29942	broad.mit.edu	36	8	31009036	31009036	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	31009036	31009036	PURG	8	C	C	G	20
SNTG1	54212	broad.mit.edu	36	8	51611798	51611798	+	Nonsense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	51611798	51611798	SNTG1	8	T	T	A	61
RGS20	8601	broad.mit.edu	36	8	55033562	55033562	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10			T	C	T	T	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Silent	SNP	55033562	55033562	RGS20	8	T	T	C	63
PRDM14	63978	broad.mit.edu	36	8	71141225	71141225	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	71141225	71141225	PRDM14	8	C	C	T	17
KCNB2	9312	broad.mit.edu	36	8	74011716	74011716	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	74011716	74011716	KCNB2	8	G	G	T	45
RGS22	26166	broad.mit.edu	36	8	101144951	101144951	+	Nonsense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	101144951	101144951	RGS22	8	A	A	T	8
DMRT3	58524	broad.mit.edu	36	9	980347	980347	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	980347	980347	DMRT3	9	T	T	A	59
ARID3C	138715	broad.mit.edu	36	9	34612527	34612527	+	Splice_Site_SNP	SNP	C	C	G	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Splice_Site_SNP	SNP	34612527	34612527	ARID3C	9	C	C	G	32
CA9	768	broad.mit.edu	36	9	35669329	35669329	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10			G	T	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	35669329	35669329	CA9	9	G	G	T	36
FRMPD1	22844	broad.mit.edu	36	9	37722367	37722367	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	37722367	37722367	FRMPD1	9	G	G	C	38
PRUNE2	158471	broad.mit.edu	36	9	78514633	78514633	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	78514633	78514633	PRUNE2	9	C	C	T	28
C9orf21	195827	broad.mit.edu	36	9	98453761	98453761	+	Splice_Site_SNP	SNP	C	C	A	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Splice_Site_SNP	SNP	98453761	98453761	C9orf21	9	C	C	A	18
SVEP1	79987	broad.mit.edu	36	9	112316053	112316053	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	112316053	112316053	SVEP1	9	A	A	C	6
PAPPA	5069	broad.mit.edu	36	9	118179697	118179697	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10			C	G	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	118179697	118179697	PAPPA	9	C	C	G	32
PPP6C	5537	broad.mit.edu	36	9	126956018	126956018	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10			G	A	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Silent	SNP	126956018	126956018	PPP6C	9	G	G	A	45
FAM102A	399665	broad.mit.edu	36	9	129750189	129750190	+	Missense_Mutation	DNP	GC	GC	AG	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	DNP	129750189	129750190	FAM102A	9	GC	GC	AG	42
SLC27A4	10999	broad.mit.edu	36	9	130162578	130162578	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	130162578	130162578	SLC27A4	9	A	A	G	11
C9orf116	138162	broad.mit.edu	36	9	137527258	137527258	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	137527258	137527258	C9orf116	9	T	T	C	61
EGFL7	51162	broad.mit.edu	36	9	138686547	138686547	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	138686547	138686547	EGFL7	9	G	G	A	33
TUBB2C	10383	broad.mit.edu	36	9	139257542	139257542	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	139257542	139257542	TUBB2C	9	A	A	T	2
APOOL	139322	broad.mit.edu	36	X	84197550	84197550	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	84197550	84197550	APOOL	23	A	A	G	7
MORC4	79710	broad.mit.edu	36	X	106116087	106116087	+	Splice_Site_SNP	SNP	C	C	T	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Splice_Site_SNP	SNP	106116087	106116087	MORC4	23	C	C	T	28
PAK3	5063	broad.mit.edu	36	X	110346422	110346422	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10			T	C	T	T	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	110346422	110346422	PAK3	23	T	T	C	50
TKTL1	8277	broad.mit.edu	36	X	153202398	153202398	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	153202398	153202398	TKTL1	23	G	G	C	41
F8	2157	broad.mit.edu	36	X	153880954	153880954	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10			A	T	A	A	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	153880954	153880954	F8	23	A	A	T	7
CD163L1	283316	broad.mit.edu	36	12	7418493	7418512	+	Frame_Shift_Del	DEL	CACACCACGTGGGCATCGCT	-	CACACCACGTGGGCATCGCT	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	Broad	Frame_Shift_Del	DEL	7418493	7418512	CD163L1	12	CACACCACGTGGGCATCGCT	-	CACACCACGTGGGCATCGCT	17
MPRIP	23164	broad.mit.edu	36	17	17002754	17002786	+	In_Frame_Del	DEL	CGGAGGCGGGAGGAGCGCCGCAAGCGCTTCGGG	-	CGGAGGCGGGAGGAGCGCCGCAAGCGCTTCGGG	novel	Unknown	TCGA-25-1313-01	TCGA-25-1313-10							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	Broad	In_Frame_Del	DEL	17002754	17002786	MPRIP	17	CGGAGGCGGGAGGAGCGCCGCAAGCGCTTCGGG	-	CGGAGGCGGGAGGAGCGCCGCAAGCGCTTCGGG	19
