Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
AACS	65985	broad.mit.edu	37	12	125621357	125621357	+	Missense_Mutation	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA3	21	broad.mit.edu	37	16	2333457	2333457	+	Intron	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA6	23460	broad.mit.edu	37	17	67114072	67114072	+	Missense_Mutation	SNP	T	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB1	5243	broad.mit.edu	37	7	87133794	87133794	+	Intron	SNP	C	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB5	340273	broad.mit.edu	37	7	20698332	20698332	+	Intron	SNP	C	T	T	rs116410161	by1000genomes	TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB6	10058	broad.mit.edu	37	2	220075879	220075879	+	Intron	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCF1	23	broad.mit.edu	37	6	30557511	30557511	+	Intron	SNP	G	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCG5	64240	broad.mit.edu	37	2	44051683	44051683	+	Intron	SNP	A	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCG5	64240	broad.mit.edu	37	2	44053560	44053560	+	Silent	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACBD7	414149	broad.mit.edu	37	10	15059922	15059922	+	Intron	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACO1	48	broad.mit.edu	37	9	32419181	32419181	+	Intron	SNP	A	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSM2B	348158	broad.mit.edu	37	16	20548599	20548599	+	Missense_Mutation	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTL6B	51412	broad.mit.edu	37	7	100252961	100252961	+	Intron	SNP	G	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTR3	10096	broad.mit.edu	37	2	114670907	114670907	+	Intron	SNP	G	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTRT1	139741	broad.mit.edu	37	X	127185207	127185207	+	Missense_Mutation	SNP	G	C	C	rs138169925		TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM2	2515	broad.mit.edu	37	8	39607168	39607168	+	Intron	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106054051	106054051	+	Intron	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	107219191	107219191	+	Intron	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM7	8756	broad.mit.edu	37	8	24298540	24298540	+	5'UTR	SNP	T	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMDEC1	27299	broad.mit.edu	37	8	24253338	24253338	+	Intron	SNP	A	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33588881	33588881	+	Silent	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33616207	33616207	+	Intron	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33662249	33662249	+	Intron	SNP	G	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS16	170690	broad.mit.edu	37	5	5306811	5306811	+	Silent	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS9	56999	broad.mit.edu	37	3	64640393	64640393	+	Intron	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTSL1	92949	broad.mit.edu	37	9	18777725	18777726	+	Silent	DNP	CC	AT	AT			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY10	55811	broad.mit.edu	37	1	167825402	167825402	+	Splice_Site	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY2	108	broad.mit.edu	37	5	7784384	7784384	+	Intron	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY5	111	broad.mit.edu	37	3	123003553	123003553	+	Missense_Mutation	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADD2	119	broad.mit.edu	37	2	70904843	70904843	+	Intron	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGBL1	123624	broad.mit.edu	37	15	86807971	86807971	+	Silent	SNP	T	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGL	178	broad.mit.edu	37	1	100350316	100350316	+	Intron	SNP	A	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGPAT9	84803	broad.mit.edu	37	4	84519731	84519731	+	Intron	SNP	T	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHDC1	27245	broad.mit.edu	37	1	27874644	27874644	+	Nonsense_Mutation	SNP	G	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHNAK2	113146	broad.mit.edu	37	14	105418113	105418113	+	Silent	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP12	9590	broad.mit.edu	37	6	151674269	151674269	+	Silent	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKNAD1	254268	broad.mit.edu	37	1	109377495	109377495	+	Intron	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKR7A3	22977	broad.mit.edu	37	1	19611161	19611161	+	Intron	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALCAM	214	broad.mit.edu	37	3	105252423	105252423	+	Intron	SNP	T	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH8A1	64577	broad.mit.edu	37	6	135239557	135239557	+	Missense_Mutation	SNP	T	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALG13	79868	broad.mit.edu	37	X	110924304	110924304	+	5'Flank	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALPI	248	broad.mit.edu	37	2	233320856	233320856	+	5'UTR	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALS2	57679	broad.mit.edu	37	2	202582933	202582933	+	Nonsense_Mutation	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMY2B	280	broad.mit.edu	37	1	104118311	104118311	+	Intron	SNP	T	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMY2B	280	broad.mit.edu	37	1	104119996	104119996	+	Intron	SNP	G	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKFN1	162282	broad.mit.edu	37	17	54526374	54526374	+	Intron	SNP	C	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKFN1	162282	broad.mit.edu	37	17	54555015	54555015	+	Missense_Mutation	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD40	91369	broad.mit.edu	37	17	48773313	48773313	+	3'UTR	SNP	T	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKS1B	56899	broad.mit.edu	37	12	99793432	99793432	+	Missense_Mutation	SNP	T	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO5	203859	broad.mit.edu	37	11	22281220	22281220	+	Silent	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AOC3	8639	broad.mit.edu	37	17	41004383	41004383	+	Silent	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APLF	200558	broad.mit.edu	37	2	68794563	68794563	+	Intron	SNP	T	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOL2	23780	broad.mit.edu	37	22	36629211	36629211	+	5'UTR	SNP	T	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQPEP	206338	broad.mit.edu	37	5	115350132	115350132	+	Missense_Mutation	SNP	A	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARCN1	372	broad.mit.edu	37	11	118454750	118454750	+	Intron	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF2	9181	broad.mit.edu	37	1	155922385	155922385	+	Intron	SNP	T	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARID1B	57492	broad.mit.edu	37	6	157527237	157527237	+	Intron	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASAP1	50807	broad.mit.edu	37	8	131199494	131199494	+	Missense_Mutation	SNP	T	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASCC2	84164	broad.mit.edu	37	22	30221692	30221692	+	Missense_Mutation	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	176915038	176915038	+	Intron	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP13A5	344905	broad.mit.edu	37	3	193023452	193023452	+	Missense_Mutation	SNP	C	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2A2	488	broad.mit.edu	37	12	110734292	110734293	+	Intron	DNP	GG	CT	CT			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP6V0A4	50617	broad.mit.edu	37	7	138433786	138433786	+	Intron	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11021203	11021203	+	3'UTR	SNP	A	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11039103	11039103	+	3'UTR	SNP	G	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BARHL2	343472	broad.mit.edu	37	1	91182017	91182017	+	Intron	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BBX	56987	broad.mit.edu	37	3	107491504	107491504	+	Missense_Mutation	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCAN	63827	broad.mit.edu	37	1	156628186	156628186	+	Intron	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCO2	83875	broad.mit.edu	37	11	112053873	112053874	+	Intron	DNP	GA	AT	AT			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BDP1	55814	broad.mit.edu	37	5	70813227	70813227	+	Missense_Mutation	SNP	C	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BICD1	636	broad.mit.edu	37	12	32429129	32429129	+	Intron	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BIRC6	57448	broad.mit.edu	37	2	32640830	32640830	+	Missense_Mutation	SNP	A	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRIP1	83990	broad.mit.edu	37	17	59934404	59934404	+	Intron	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTBD8	284697	broad.mit.edu	37	1	92591622	92591623	+	Intron	DNP	GG	CT	CT			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BZRAP1	9256	broad.mit.edu	37	17	56383181	56383181	+	Intron	SNP	G	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BZW1	9689	broad.mit.edu	37	2	201683039	201683039	+	Nonsense_Mutation	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf12	26148	broad.mit.edu	37	10	98744545	98744545	+	Missense_Mutation	SNP	G	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf2	56652	broad.mit.edu	37	10	102748989	102748989	+	Missense_Mutation	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf68	79741	broad.mit.edu	37	10	33137737	33137737	+	Intron	SNP	T	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf41	25758	broad.mit.edu	37	11	33689482	33689482	+	Missense_Mutation	SNP	A	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf11	55726	broad.mit.edu	37	12	27081679	27081679	+	Missense_Mutation	SNP	C	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf63	374467	broad.mit.edu	37	12	97158003	97158003	+	Missense_Mutation	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf149	112849	broad.mit.edu	37	14	59946027	59946027	+	Missense_Mutation	SNP	T	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf73	91828	broad.mit.edu	37	14	103566613	103566613	+	Silent	SNP	T	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf42	90381	broad.mit.edu	37	15	90161343	90161343	+	Intron	SNP	A	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf51	196968	broad.mit.edu	37	15	100333170	100333170	+	Intron	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C18orf19	125228	broad.mit.edu	37	18	13666739	13666739	+	Intron	SNP	A	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C18orf1	753	broad.mit.edu	37	18	13438175	13438176	+	Intron	DNP	CG	AT	AT			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C18orf34	374864	broad.mit.edu	37	18	30992034	30992034	+	Missense_Mutation	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf18	147685	broad.mit.edu	37	19	58485592	58485592	+	Intron	SNP	C	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf53	28974	broad.mit.edu	37	19	13885476	13885476	+	Silent	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf105	92346	broad.mit.edu	37	1	172425550	172425550	+	Intron	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf150	148823	broad.mit.edu	37	1	247737764	247737764	+	3'UTR	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf173	127254	broad.mit.edu	37	1	75037223	75037223	+	Missense_Mutation	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf200	644997	broad.mit.edu	37	1	9714378	9714378	+	Silent	SNP	T	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf49	84066	broad.mit.edu	37	1	178489836	178489836	+	Missense_Mutation	SNP	C	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C21orf33	8209	broad.mit.edu	37	21	45563153	45563153	+	Missense_Mutation	SNP	C	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C21orf45	54069	broad.mit.edu	37	21	33642869	33642869	+	Intron	SNP	A	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf44	80304	broad.mit.edu	37	2	24260629	24260630	+	Frame_Shift_Ins	INS	-	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf44	80304	broad.mit.edu	37	2	24261821	24261821	+	Missense_Mutation	SNP	A	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf51	200523	broad.mit.edu	37	2	88828634	88828634	+	Missense_Mutation	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf55	343990	broad.mit.edu	37	2	99443402	99443402	+	Intron	SNP	T	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf24	115795	broad.mit.edu	37	3	10146346	10146346	+	Missense_Mutation	SNP	C	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5orf22	55322	broad.mit.edu	37	5	31536014	31536014	+	Intron	SNP	A	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5orf28	64417	broad.mit.edu	37	5	43453735	43453735	+	Intron	SNP	G	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5orf42	65250	broad.mit.edu	37	5	37183179	37183179	+	Missense_Mutation	SNP	A	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf136	221545	broad.mit.edu	37	6	30619352	30619352	+	Intron	SNP	C	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf195	154386	broad.mit.edu	37	6	2623651	2623651	+	3'UTR	SNP	G	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf217	100131814	broad.mit.edu	37	6	135941069	135941069	+	Intron	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf10	79783	broad.mit.edu	37	7	40536007	40536007	+	Intron	SNP	A	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8orf45	157777	broad.mit.edu	37	8	67813464	67813464	+	Missense_Mutation	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA13	377677	broad.mit.edu	37	8	86163066	86163066	+	Silent	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA2	760	broad.mit.edu	37	8	86388024	86388024	+	Intron	SNP	T	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181547026	181547026	+	Intron	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181549852	181549852	+	Missense_Mutation	SNP	T	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181728081	181728081	+	Intron	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D1	781	broad.mit.edu	37	7	81626471	81626471	+	Intron	SNP	T	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D1	781	broad.mit.edu	37	7	81689937	81689937	+	Intron	SNP	C	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALB2	794	broad.mit.edu	37	16	71411557	71411557	+	Intron	SNP	T	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAND1	55832	broad.mit.edu	37	12	67698483	67698483	+	Silent	SNP	A	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN11	11131	broad.mit.edu	37	6	44150872	44150872	+	Missense_Mutation	SNP	C	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAV3	859	broad.mit.edu	37	3	8787303	8787303	+	Missense_Mutation	SNP	A	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CBLC	23624	broad.mit.edu	37	19	45303666	45303666	+	Missense_Mutation	SNP	C	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC132	55610	broad.mit.edu	37	7	92970683	92970683	+	Intron	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC37	348807	broad.mit.edu	37	3	126142149	126142149	+	Intron	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC50	152137	broad.mit.edu	37	3	191076003	191076003	+	Intron	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC60	160777	broad.mit.edu	37	12	119961558	119961558	+	Silent	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC77	84318	broad.mit.edu	37	12	537876	537876	+	Intron	SNP	A	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC80	151887	broad.mit.edu	37	3	112356904	112356904	+	Missense_Mutation	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCL14	6358	broad.mit.edu	37	17	34311470	34311470	+	Missense_Mutation	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCL25	6370	broad.mit.edu	37	19	8121327	8121327	+	Missense_Mutation	SNP	T	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCNA2	890	broad.mit.edu	37	4	122738877	122738880	+	Intron	DEL	CACT	-	-			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCR7	1236	broad.mit.edu	37	17	38710799	38710799	+	3'UTR	SNP	T	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD1B	910	broad.mit.edu	37	1	158301139	158301139	+	Intron	SNP	A	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD1C	911	broad.mit.edu	37	1	158262801	158262801	+	Intron	SNP	A	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD300LB	124599	broad.mit.edu	37	17	72519862	72519862	+	Intron	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD58	965	broad.mit.edu	37	1	117057431	117057431	+	3'UTR	SNP	C	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC20B	166979	broad.mit.edu	37	5	54429227	54429227	+	Intron	SNP	A	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC25C	995	broad.mit.edu	37	5	137626512	137626512	+	Intron	SNP	C	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC5L	988	broad.mit.edu	37	6	44371573	44371573	+	Silent	SNP	A	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDCP2	200008	broad.mit.edu	37	1	54605588	54605588	+	Missense_Mutation	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH11	1009	broad.mit.edu	37	16	64981542	64981542	+	Missense_Mutation	SNP	C	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH18	1016	broad.mit.edu	37	5	19473547	19473547	+	Missense_Mutation	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH18	1016	broad.mit.edu	37	5	19571616	19571616	+	Intron	SNP	T	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH23	64072	broad.mit.edu	37	10	73567303	73567303	+	Missense_Mutation	SNP	A	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH4	1002	broad.mit.edu	37	20	60308764	60308765	+	Intron	INS	-	GAAA	GAAA			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH6	1004	broad.mit.edu	37	5	31316316	31316316	+	Missense_Mutation	SNP	T	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK5RAP2	55755	broad.mit.edu	37	9	123173543	123173543	+	Intron	SNP	T	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK5RAP2	55755	broad.mit.edu	37	9	123206000	123206000	+	Missense_Mutation	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK6	1021	broad.mit.edu	37	7	92300683	92300683	+	Intron	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK6	1021	broad.mit.edu	37	7	92300778	92300779	+	Missense_Mutation	DNP	CC	AG	AG			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDR2	1039	broad.mit.edu	37	16	22358637	22358637	+	Silent	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEACAM18	729767	broad.mit.edu	37	19	51984864	51984864	+	Silent	SNP	A	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELF1	10658	broad.mit.edu	37	11	47498796	47498796	+	Intron	SNP	C	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELF2	10659	broad.mit.edu	37	10	11317166	11317166	+	Intron	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPF	1063	broad.mit.edu	37	1	214818865	214818865	+	Missense_Mutation	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPJ	55835	broad.mit.edu	37	13	25467083	25467083	+	Intron	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFHR4	10877	broad.mit.edu	37	1	196871560	196871560	+	Missense_Mutation	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD5	26038	broad.mit.edu	37	1	6215697	6215697	+	Silent	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD7	55636	broad.mit.edu	37	8	61778121	61778121	+	Missense_Mutation	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHEK2	11200	broad.mit.edu	37	22	29130298	29130298	+	Intron	SNP	G	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHI3L1	1116	broad.mit.edu	37	1	203150442	203150442	+	Intron	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHIT1	1118	broad.mit.edu	37	1	203192741	203192741	+	Missense_Mutation	SNP	T	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHN1	1123	broad.mit.edu	37	2	175742647	175742647	+	Missense_Mutation	SNP	T	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRNA1	1134	broad.mit.edu	37	2	175622695	175622695	+	Silent	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHTF18	63922	broad.mit.edu	37	16	844112	844112	+	Missense_Mutation	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CIDEA	1149	broad.mit.edu	37	18	12254358	12254358	+	5'UTR	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CILP2	148113	broad.mit.edu	37	19	19655656	19655656	+	Missense_Mutation	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CINP	51550	broad.mit.edu	37	14	102816167	102816167	+	Intron	SNP	C	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCN2	1181	broad.mit.edu	37	3	184075392	184075392	+	Intron	SNP	T	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLDN14	23562	broad.mit.edu	37	21	37833476	37833476	+	Missense_Mutation	SNP	A	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC4F	165530	broad.mit.edu	37	2	71043795	71043796	+	Missense_Mutation	DNP	CC	AG	AG			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLIP1	6249	broad.mit.edu	37	12	122849349	122849349	+	Intron	SNP	G	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLSTN2	64084	broad.mit.edu	37	3	140282871	140282871	+	Missense_Mutation	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGA3	1261	broad.mit.edu	37	2	99008487	99008487	+	Intron	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNOT1	23019	broad.mit.edu	37	16	58621300	58621300	+	Silent	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN4	152330	broad.mit.edu	37	3	3097913	3097913	+	3'UTR	SNP	A	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP5	129684	broad.mit.edu	37	2	125281892	125281892	+	Missense_Mutation	SNP	A	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COG2	22796	broad.mit.edu	37	1	230795245	230795245	+	Silent	SNP	T	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103449747	103449747	+	Nonsense_Mutation	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103488336	103488336	+	Missense_Mutation	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A2	1302	broad.mit.edu	37	6	33139709	33139709	+	Intron	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A2	1302	broad.mit.edu	37	6	33156808	33156809	+	Missense_Mutation	DNP	CC	GA	GA	rs149638770	byFrequency	TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL12A1	1303	broad.mit.edu	37	6	75884799	75884799	+	Missense_Mutation	SNP	A	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL1A1	1277	broad.mit.edu	37	17	48268099	48268099	+	Intron	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL1A2	1278	broad.mit.edu	37	7	94039086	94039086	+	Missense_Mutation	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL20A1	57642	broad.mit.edu	37	20	61950436	61950436	+	Missense_Mutation	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL24A1	255631	broad.mit.edu	37	1	86361916	86361916	+	Intron	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL2A1	1280	broad.mit.edu	37	12	48376560	48376560	+	Intron	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A2	1284	broad.mit.edu	37	13	111134904	111134904	+	Missense_Mutation	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A4	1286	broad.mit.edu	37	2	227924926	227924926	+	Missense_Mutation	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A6	1288	broad.mit.edu	37	X	107455052	107455052	+	Intron	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL9A1	1297	broad.mit.edu	37	6	70935579	70935579	+	Intron	SNP	T	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COMMD10	51397	broad.mit.edu	37	5	115553895	115553895	+	Intron	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPA3	1359	broad.mit.edu	37	3	148596353	148596353	+	Intron	DEL	T	-	-	rs75696101	by1000genomes	TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPNE7	27132	broad.mit.edu	37	16	89661664	89661665	+	Intron	DNP	GG	TT	TT			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPS1	1373	broad.mit.edu	37	2	211502682	211502683	+	Intron	DNP	CA	AG	AG	rs149494458	by1000genomes	TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPS1	1373	broad.mit.edu	37	2	211503846	211503846	+	Intron	SNP	T	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPXM2	119587	broad.mit.edu	37	10	125521440	125521440	+	Missense_Mutation	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRISPLD1	83690	broad.mit.edu	37	8	75926376	75926376	+	Intron	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRTAC1	55118	broad.mit.edu	37	10	99625320	99625320	+	Silent	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRY2	1408	broad.mit.edu	37	11	45882290	45882290	+	Intron	SNP	G	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSF2RA	1438	broad.mit.edu	37	X	1424439	1424439	+	Intron	SNP	A	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113259406	113259406	+	Intron	SNP	A	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSNK1A1L	122011	broad.mit.edu	37	13	37678436	37678436	+	Missense_Mutation	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSTF2	1478	broad.mit.edu	37	X	100079045	100079045	+	Intron	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSTF3	1479	broad.mit.edu	37	11	33112133	33112133	+	Missense_Mutation	SNP	T	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CT47A6	728062	broad.mit.edu	37	X	120094450	120094450	+	Silent	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTCF	10664	broad.mit.edu	37	16	67660607	67660607	+	Missense_Mutation	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNAL1	8727	broad.mit.edu	37	9	111732802	111732802	+	Intron	SNP	C	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNND2	1501	broad.mit.edu	37	5	11732322	11732322	+	Missense_Mutation	SNP	C	T	T	rs151129181	byFrequency	TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTSC	1075	broad.mit.edu	37	11	88059549	88059549	+	Intron	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTSK	1513	broad.mit.edu	37	1	150769478	150769478	+	Intron	SNP	A	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CWH43	80157	broad.mit.edu	37	4	49052588	49052588	+	Intron	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXCR2P1	3580	broad.mit.edu	37	2	218924975	218924976	+	3'UTR	DNP	CC	AA	AA			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXXC5	51523	broad.mit.edu	37	5	139060874	139060874	+	Missense_Mutation	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf48	54967	broad.mit.edu	37	X	134292300	134292300	+	Intron	SNP	A	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf59	286464	broad.mit.edu	37	X	36122632	36122632	+	Missense_Mutation	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYB5R4	51167	broad.mit.edu	37	6	84574102	84574102	+	Intron	SNP	G	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP26B1	56603	broad.mit.edu	37	2	72360229	72360229	+	Missense_Mutation	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP27C1	339761	broad.mit.edu	37	2	127960838	127960838	+	Intron	SNP	C	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2R1	120227	broad.mit.edu	37	11	14913772	14913772	+	5'Flank	SNP	A	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP46A1	10858	broad.mit.edu	37	14	100172838	100172838	+	Intron	SNP	C	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4F2	8529	broad.mit.edu	37	19	16004734	16004734	+	Intron	SNP	T	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4F3	4051	broad.mit.edu	37	19	15760829	15760829	+	Missense_Mutation	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4F3	4051	broad.mit.edu	37	19	15769235	15769235	+	Intron	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAO	1610	broad.mit.edu	37	12	109294151	109294151	+	Intron	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAPK1	1612	broad.mit.edu	37	9	90321569	90321569	+	Missense_Mutation	SNP	G	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAXX	1616	broad.mit.edu	37	6	33286531	33286531	+	Missense_Mutation	SNP	C	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCC	1630	broad.mit.edu	37	18	51025876	51025876	+	Silent	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDR2	4921	broad.mit.edu	37	1	162729653	162729653	+	Nonsense_Mutation	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX26B	203522	broad.mit.edu	37	X	134713798	134713798	+	Silent	SNP	A	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX54	79039	broad.mit.edu	37	12	113612640	113612640	+	Intron	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX5	1655	broad.mit.edu	37	17	62499732	62499732	+	Intron	SNP	G	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND2D	79961	broad.mit.edu	37	1	111743052	111743052	+	Silent	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND4C	55667	broad.mit.edu	37	9	19369895	19369895	+	Missense_Mutation	SNP	A	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEPDC5	9681	broad.mit.edu	37	22	32161132	32161132	+	Intron	SNP	T	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DFNB31	25861	broad.mit.edu	37	9	117166003	117166003	+	Intron	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKE	8526	broad.mit.edu	37	17	54936095	54936095	+	Intron	SNP	A	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX37	57647	broad.mit.edu	37	12	125453021	125453021	+	Intron	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIDO1	11083	broad.mit.edu	37	20	61542492	61542492	+	Missense_Mutation	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMXL1	1657	broad.mit.edu	37	5	118500870	118500870	+	Intron	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMXL2	23312	broad.mit.edu	37	15	51741321	51741321	+	Nonsense_Mutation	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMXL2	23312	broad.mit.edu	37	15	51741341	51741341	+	Missense_Mutation	SNP	T	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH10	196385	broad.mit.edu	37	12	124401328	124401328	+	Intron	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH5	1767	broad.mit.edu	37	5	13716890	13716890	+	Intron	SNP	A	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH5	1767	broad.mit.edu	37	5	13830206	13830206	+	Nonsense_Mutation	SNP	T	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH7	56171	broad.mit.edu	37	2	196698983	196698983	+	Missense_Mutation	SNP	C	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH7	56171	broad.mit.edu	37	2	196859376	196859376	+	Intron	SNP	T	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH8	1769	broad.mit.edu	37	6	38758183	38758183	+	Splice_Site	SNP	T	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC13	23317	broad.mit.edu	37	3	132169588	132169588	+	Missense_Mutation	SNP	A	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK10	55619	broad.mit.edu	37	2	225635348	225635348	+	Silent	SNP	T	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK8	81704	broad.mit.edu	37	9	442069	442069	+	Intron	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP4	1803	broad.mit.edu	37	2	162862233	162862233	+	Intron	SNP	G	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP6	1804	broad.mit.edu	37	7	154595525	154595525	+	Intron	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPY30	84661	broad.mit.edu	37	2	32264286	32264286	+	Intron	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSCR6	53820	broad.mit.edu	37	21	38380502	38380502	+	Missense_Mutation	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSG4	147409	broad.mit.edu	37	18	28993162	28993162	+	Missense_Mutation	SNP	G	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DTNA	1837	broad.mit.edu	37	18	32391994	32391994	+	Missense_Mutation	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DVL1	1855	broad.mit.edu	37	1	1277441	1277441	+	Missense_Mutation	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNC1H1	1778	broad.mit.edu	37	14	102506081	102506081	+	Intron	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNC1H1	1778	broad.mit.edu	37	14	102510613	102510613	+	Silent	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYSF	8291	broad.mit.edu	37	2	71741006	71741006	+	Silent	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DZIP3	9666	broad.mit.edu	37	3	108355508	108355508	+	Missense_Mutation	SNP	A	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ECE2	9718	broad.mit.edu	37	3	183994570	183994570	+	Intron	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFR3A	23167	broad.mit.edu	37	8	132968101	132968102	+	Frame_Shift_Ins	INS	-	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGR3	1960	broad.mit.edu	37	8	22548806	22548806	+	Frame_Shift_Del	DEL	G	-	-			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EHMT1	79813	broad.mit.edu	37	9	140705884	140705884	+	Intron	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF2B1	1967	broad.mit.edu	37	12	124106443	124106443	+	Missense_Mutation	SNP	C	A	A	rs141136209		TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF2S1	1965	broad.mit.edu	37	14	67841071	67841071	+	Intron	SNP	G	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF4G1	1981	broad.mit.edu	37	3	184042135	184042135	+	Silent	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF5	1983	broad.mit.edu	37	14	103805183	103805183	+	Missense_Mutation	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELOVL1	64834	broad.mit.edu	37	1	43831285	43831285	+	5'UTR	SNP	G	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EML5	161436	broad.mit.edu	37	14	89088816	89088816	+	Intron	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENOSF1	55556	broad.mit.edu	37	18	678552	678552	+	Intron	SNP	T	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPEP	2028	broad.mit.edu	37	4	111469522	111469522	+	Intron	SNP	T	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPP7	339221	broad.mit.edu	37	17	77705081	77705081	+	Silent	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPB41L5	57669	broad.mit.edu	37	2	120850798	120850798	+	Intron	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA3	2042	broad.mit.edu	37	3	89499322	89499322	+	Intron	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA5	2044	broad.mit.edu	37	4	66467388	66467388	+	Missense_Mutation	SNP	C	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA6	285220	broad.mit.edu	37	3	97439280	97439281	+	Intron	DNP	CC	AT	AT			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHB2	2048	broad.mit.edu	37	1	23191570	23191570	+	Nonsense_Mutation	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPN1	29924	broad.mit.edu	37	19	56196893	56196893	+	Silent	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPN2	22905	broad.mit.edu	37	17	19213203	19213203	+	Missense_Mutation	SNP	T	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERBB4	2066	broad.mit.edu	37	2	212426882	212426882	+	Intron	SNP	T	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERBB4	2066	broad.mit.edu	37	2	212587266	212587266	+	Intron	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERN2	10595	broad.mit.edu	37	16	23721868	23721868	+	Missense_Mutation	SNP	G	T	T	rs139404469		TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERP44	23071	broad.mit.edu	37	9	102822465	102822465	+	Intron	SNP	A	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESR1	2099	broad.mit.edu	37	6	152419965	152419965	+	Missense_Mutation	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F2R	2149	broad.mit.edu	37	5	76028843	76028843	+	Missense_Mutation	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F9	2158	broad.mit.edu	37	X	138619567	138619567	+	Intron	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM120A	23196	broad.mit.edu	37	9	96324522	96324522	+	Missense_Mutation	SNP	T	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM129C	199786	broad.mit.edu	37	19	17641781	17641781	+	Intron	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135A	57579	broad.mit.edu	37	6	71200705	71200705	+	Intron	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139153548	139153548	+	Missense_Mutation	SNP	A	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM13B	51306	broad.mit.edu	37	5	137323851	137323851	+	Intron	SNP	G	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM13C	220965	broad.mit.edu	37	10	61013993	61013993	+	Intron	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM13C	220965	broad.mit.edu	37	10	61112135	61112135	+	Silent	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM190A	401145	broad.mit.edu	37	4	91701554	91701554	+	Intron	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM19A2	338811	broad.mit.edu	37	12	62148764	62148764	+	Missense_Mutation	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM27L	284123	broad.mit.edu	37	17	21826075	21826075	+	Intron	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM69A	388650	broad.mit.edu	37	1	93396891	93396891	+	Intron	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM83B	222584	broad.mit.edu	37	6	54735153	54735153	+	Missense_Mutation	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM83H	286077	broad.mit.edu	37	8	144812633	144812633	+	Silent	SNP	C	A	A	rs118023699	by1000genomes	TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FANCM	57697	broad.mit.edu	37	14	45633758	45633758	+	Missense_Mutation	SNP	G	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAP	2191	broad.mit.edu	37	2	163066582	163066582	+	Intron	SNP	A	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAP	2191	broad.mit.edu	37	2	163075642	163075642	+	Missense_Mutation	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT2	2196	broad.mit.edu	37	5	150885377	150885378	+	Frame_Shift_Ins	INS	-	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT2	2196	broad.mit.edu	37	5	150945342	150945342	+	Missense_Mutation	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO43	286151	broad.mit.edu	37	8	101153863	101153863	+	Missense_Mutation	SNP	C	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL1	115350	broad.mit.edu	37	1	157773709	157773709	+	Missense_Mutation	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL2	79368	broad.mit.edu	37	1	157739907	157739907	+	Missense_Mutation	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL3	115352	broad.mit.edu	37	1	157660129	157660129	+	Missense_Mutation	SNP	T	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FH	2271	broad.mit.edu	37	1	241661252	241661252	+	Missense_Mutation	SNP	T	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ43950	347127	broad.mit.edu	37	9	84532864	84532864	+	3'UTR	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN2	56776	broad.mit.edu	37	1	240308322	240308323	+	Intron	INS	-	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMO1	2326	broad.mit.edu	37	1	171247809	171247810	+	Intron	DEL	TA	-	-			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FNBP1L	54874	broad.mit.edu	37	1	94014930	94014930	+	Missense_Mutation	SNP	A	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FNTB	2342	broad.mit.edu	37	14	65479031	65479032	+	Intron	DNP	CC	AT	AT			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXB1	27023	broad.mit.edu	37	15	60297294	60297294	+	Missense_Mutation	SNP	G	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXN3	1112	broad.mit.edu	37	14	89647120	89647120	+	Missense_Mutation	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXQ1	94234	broad.mit.edu	37	6	1313599	1313599	+	Silent	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FPR2	2358	broad.mit.edu	37	19	52272196	52272196	+	Missense_Mutation	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FPR3	2359	broad.mit.edu	37	19	52327526	52327526	+	Silent	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMD1	79981	broad.mit.edu	37	6	168461781	168461781	+	Intron	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMD3	257019	broad.mit.edu	37	9	85925242	85925242	+	Intron	SNP	T	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRY	10129	broad.mit.edu	37	13	32768132	32768132	+	Intron	SNP	T	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSTL4	23105	broad.mit.edu	37	5	132763551	132763551	+	Intron	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FYB	2533	broad.mit.edu	37	5	39153450	39153450	+	Intron	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FYB	2533	broad.mit.edu	37	5	39170373	39170373	+	Intron	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAB3	139716	broad.mit.edu	37	X	153927568	153927568	+	Splice_Site	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAB4	128954	broad.mit.edu	37	22	17444635	17444635	+	Missense_Mutation	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA1	2554	broad.mit.edu	37	5	161281319	161281319	+	Intron	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA4	2557	broad.mit.edu	37	4	46976423	46976423	+	Intron	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA6	2559	broad.mit.edu	37	5	161116290	161116290	+	Silent	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALC	2581	broad.mit.edu	37	14	88420675	88420675	+	Intron	SNP	A	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALK1	2584	broad.mit.edu	37	17	73759375	73759375	+	Intron	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GATAD2B	57459	broad.mit.edu	37	1	153789997	153789997	+	Missense_Mutation	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCFC1	94104	broad.mit.edu	37	21	34131384	34131384	+	Intron	SNP	T	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCNT2	2651	broad.mit.edu	37	6	10586809	10586809	+	Intron	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFRAL	389400	broad.mit.edu	37	6	55198734	55198734	+	Missense_Mutation	SNP	A	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GGTLC1	92086	broad.mit.edu	37	20	23967133	23967133	+	Missense_Mutation	SNP	T	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIMAP6	474344	broad.mit.edu	37	7	150325196	150325196	+	Silent	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GK5	256356	broad.mit.edu	37	3	141905162	141905162	+	Intron	SNP	C	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLI2	2736	broad.mit.edu	37	2	121712731	121712731	+	Intron	SNP	T	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLT25D1	79709	broad.mit.edu	37	19	17688707	17688707	+	Intron	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLUL	2752	broad.mit.edu	37	1	182357841	182357841	+	Missense_Mutation	SNP	T	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GMEB2	26205	broad.mit.edu	37	20	62226975	62226975	+	Missense_Mutation	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNB2L1	10399	broad.mit.edu	37	5	180666449	180666449	+	Intron	SNP	C	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNL2	29889	broad.mit.edu	37	1	38040519	38040519	+	Intron	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNPTAB	79158	broad.mit.edu	37	12	102160038	102160038	+	Silent	SNP	A	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGA5	9950	broad.mit.edu	37	14	93299761	93299761	+	Intron	SNP	A	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLIM4	27333	broad.mit.edu	37	3	167745467	167745467	+	Intron	DEL	C	-	-			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPC2	221914	broad.mit.edu	37	7	99769706	99769706	+	Intron	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR112	139378	broad.mit.edu	37	X	135487998	135487998	+	Missense_Mutation	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR153	387509	broad.mit.edu	37	1	6313779	6313779	+	Missense_Mutation	SNP	A	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR56	9289	broad.mit.edu	37	16	57697327	57697327	+	Intron	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPRC6A	222545	broad.mit.edu	37	6	117128030	117128030	+	Nonsense_Mutation	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPSM2	29899	broad.mit.edu	37	1	109441226	109441226	+	Intron	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN2A	2903	broad.mit.edu	37	16	9857330	9857330	+	Silent	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN3A	116443	broad.mit.edu	37	9	104449372	104449372	+	Missense_Mutation	SNP	G	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM1	2911	broad.mit.edu	37	6	146350535	146350535	+	5'UTR	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM1	2911	broad.mit.edu	37	6	146755937	146755937	+	3'UTR	SNP	G	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSK3B	2932	broad.mit.edu	37	3	119666044	119666044	+	Intron	SNP	T	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSTM3	2947	broad.mit.edu	37	1	110282237	110282237	+	Intron	SNP	A	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTF2E2	2961	broad.mit.edu	37	8	30464658	30464658	+	Frame_Shift_Del	DEL	C	-	-			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTF3C1	2975	broad.mit.edu	37	16	27483258	27483258	+	Intron	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCY2F	2986	broad.mit.edu	37	X	108718455	108718455	+	Missense_Mutation	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GXYLT1	283464	broad.mit.edu	37	12	42499835	42499835	+	Missense_Mutation	SNP	C	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GYPA	2993	broad.mit.edu	37	4	144918644	144918644	+	Intron	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GZMA	3001	broad.mit.edu	37	5	54401361	54401361	+	Missense_Mutation	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAS1	3036	broad.mit.edu	37	19	52220138	52220138	+	Intron	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCRTR2	3062	broad.mit.edu	37	6	55147091	55147091	+	Missense_Mutation	SNP	G	T	T	rs148944500		TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR5B	54497	broad.mit.edu	37	2	37255774	37255774	+	Intron	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR6	63897	broad.mit.edu	37	17	58150682	58150682	+	Intron	SNP	T	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HHIPL2	79802	broad.mit.edu	37	1	222696210	222696210	+	Silent	SNP	T	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST3H3	8290	broad.mit.edu	37	1	228612717	228612717	+	Silent	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLA-DOA	3111	broad.mit.edu	37	6	32976019	32976019	+	Nonsense_Mutation	SNP	G	T	T	rs41556712		TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLA-G	3135	broad.mit.edu	37	6	29858230	29858230	+	Intron	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLA-G	3135	broad.mit.edu	37	6	29897093	29897093	+	Intron	SNP	A	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	186134328	186134328	+	Intron	SNP	G	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXB1	3211	broad.mit.edu	37	17	46607742	46607742	+	Silent	SNP	G	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS1BP3	64342	broad.mit.edu	37	2	20818972	20818972	+	Silent	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSDL2	84263	broad.mit.edu	37	9	115166449	115166449	+	Intron	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR4	3360	broad.mit.edu	37	5	147863923	147863923	+	Intron	SNP	T	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR6	3362	broad.mit.edu	37	1	19992706	19992706	+	Missense_Mutation	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IDE	3416	broad.mit.edu	37	10	94225417	94225417	+	Intron	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IDO2	169355	broad.mit.edu	37	8	39840251	39840251	+	Missense_Mutation	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFT122	55764	broad.mit.edu	37	3	129185898	129185898	+	Missense_Mutation	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFT122	55764	broad.mit.edu	37	3	129221462	129221462	+	Intron	SNP	A	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF3	3321	broad.mit.edu	37	1	117209030	117209030	+	5'UTR	SNP	T	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL10	3586	broad.mit.edu	37	1	206945736	206945736	+	Silent	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL4I1	259307	broad.mit.edu	37	19	50397696	50397696	+	Silent	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ILDR2	387597	broad.mit.edu	37	1	166906009	166906009	+	Intron	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IMPAD1	54928	broad.mit.edu	37	8	57876473	57876473	+	Missense_Mutation	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IMPG2	50939	broad.mit.edu	37	3	100961440	100961440	+	Intron	SNP	T	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INTS7	25896	broad.mit.edu	37	1	212151610	212151610	+	Intron	SNP	T	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IPMK	253430	broad.mit.edu	37	10	59997554	59997555	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IPO11	51194	broad.mit.edu	37	5	61790032	61790032	+	Intron	SNP	C	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IPO9	55705	broad.mit.edu	37	1	201844051	201844051	+	Silent	SNP	T	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRGC	56269	broad.mit.edu	37	19	44223928	44223928	+	Missense_Mutation	SNP	T	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAL	3683	broad.mit.edu	37	16	30522496	30522496	+	Intron	SNP	A	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAX	3687	broad.mit.edu	37	16	31371771	31371771	+	Missense_Mutation	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAK3	3718	broad.mit.edu	37	19	17949156	17949156	+	Silent	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JMJD1C	221037	broad.mit.edu	37	10	64974642	64974642	+	Missense_Mutation	SNP	T	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JTB	10899	broad.mit.edu	37	1	153949472	153949472	+	Missense_Mutation	SNP	A	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KANK1	23189	broad.mit.edu	37	9	660066	660066	+	Intron	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNB2	9312	broad.mit.edu	37	8	73849991	73849991	+	Missense_Mutation	SNP	A	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH7	90134	broad.mit.edu	37	2	163361085	163361085	+	Silent	SNP	A	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNJ3	3760	broad.mit.edu	37	2	155566053	155566053	+	Intron	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM6A	7403	broad.mit.edu	37	X	44949010	44949010	+	Missense_Mutation	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM6B	23135	broad.mit.edu	37	17	7752487	7752487	+	Missense_Mutation	SNP	G	A	A	rs71371820		TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM6B	23135	broad.mit.edu	37	17	7752588	7752588	+	Silent	SNP	G	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM6B	23135	broad.mit.edu	37	17	7752684	7752684	+	Silent	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM6B	23135	broad.mit.edu	37	17	7752915	7752915	+	Silent	SNP	G	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM6B	23135	broad.mit.edu	37	17	7753196	7753196	+	Silent	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM6B	23135	broad.mit.edu	37	17	7753205	7753205	+	Missense_Mutation	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM6B	23135	broad.mit.edu	37	17	7753218	7753218	+	Missense_Mutation	SNP	G	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM6B	23135	broad.mit.edu	37	17	7753314	7753314	+	Intron	SNP	G	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KEAP1	9817	broad.mit.edu	37	19	10597426	10597426	+	Frame_Shift_Del	DEL	C	-	-			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KEL	3792	broad.mit.edu	37	7	142649419	142649419	+	Intron	SNP	T	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0562	9731	broad.mit.edu	37	1	3761439	3761439	+	Intron	SNP	A	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0652	9776	broad.mit.edu	37	11	46677781	46677781	+	Splice_Site	SNP	A	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0947	23379	broad.mit.edu	37	5	5473822	5473822	+	Missense_Mutation	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1217	56243	broad.mit.edu	37	10	24762579	24762579	+	Silent	SNP	A	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1524	57650	broad.mit.edu	37	3	108285524	108285524	+	Intron	SNP	C	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF1A	547	broad.mit.edu	37	2	241697805	241697805	+	Missense_Mutation	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF26A	26153	broad.mit.edu	37	14	104639595	104639595	+	Intron	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF6	221458	broad.mit.edu	37	6	39693261	39693261	+	5'Flank	SNP	G	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR2DL3	3804	broad.mit.edu	37	19	55267558	55267558	+	Intron	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR2DL3	3804	broad.mit.edu	37	19	55272083	55272083	+	Intron	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR2DL3	3804	broad.mit.edu	37	19	55278101	55278101	+	Intron	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLK1	3816	broad.mit.edu	37	19	51322674	51322674	+	Intron	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLK8	11202	broad.mit.edu	37	19	51499412	51499412	+	Missense_Mutation	SNP	C	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLRC1	3821	broad.mit.edu	37	12	10600141	10600141	+	Missense_Mutation	SNP	A	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KNG1	3827	broad.mit.edu	37	3	186440338	186440338	+	Intron	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT24	192666	broad.mit.edu	37	17	38855764	38855764	+	Missense_Mutation	SNP	C	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT25	147183	broad.mit.edu	37	17	38907347	38907347	+	Intron	SNP	T	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT4	3851	broad.mit.edu	37	12	53201035	53201035	+	Intron	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LACTB2	51110	broad.mit.edu	37	8	71553275	71553275	+	Silent	SNP	T	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAD1	3898	broad.mit.edu	37	1	201355596	201355596	+	Missense_Mutation	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAD1	3898	broad.mit.edu	37	1	201358337	201358337	+	Missense_Mutation	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAIR2	3904	broad.mit.edu	37	19	55019474	55019474	+	Intron	SNP	C	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA1	284217	broad.mit.edu	37	18	7080458	7080458	+	Splice_Site	SNP	T	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMC1	3915	broad.mit.edu	37	1	183097701	183097701	+	Intron	SNP	T	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMP3	27074	broad.mit.edu	37	3	182858522	182858522	+	Intron	SNP	T	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAPTM4B	55353	broad.mit.edu	37	8	98817774	98817774	+	Intron	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCE2A	353139	broad.mit.edu	37	1	152671721	152671721	+	3'UTR	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCT	3938	broad.mit.edu	37	2	136569740	136569740	+	Intron	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LDHB	3945	broad.mit.edu	37	12	21807648	21807648	+	5'Flank	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LDLR	3949	broad.mit.edu	37	19	11200278	11200279	+	Missense_Mutation	DNP	GG	CC	CC			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LDOC1	23641	broad.mit.edu	37	X	140270799	140270799	+	Missense_Mutation	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LECT1	11061	broad.mit.edu	37	13	53307506	53307507	+	Intron	DNP	CA	AT	AT			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LEF1	51176	broad.mit.edu	37	4	109002741	109002741	+	Splice_Site	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGALS3BP	3959	broad.mit.edu	37	17	76968265	76968265	+	Missense_Mutation	SNP	T	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGALS3BP	3959	broad.mit.edu	37	17	76970962	76970962	+	Intron	SNP	C	T	T	rs140005844	by1000genomes	TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGR5	8549	broad.mit.edu	37	12	71947174	71947174	+	Intron	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHX6	26468	broad.mit.edu	37	9	124988605	124988605	+	Intron	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHX8	431707	broad.mit.edu	37	1	75622511	75622511	+	Intron	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRA1	11024	broad.mit.edu	37	19	55106301	55106301	+	Missense_Mutation	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB4	11006	broad.mit.edu	37	19	55176499	55176499	+	Intron	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMAN1L	79748	broad.mit.edu	37	15	75108976	75108976	+	Missense_Mutation	SNP	A	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMBRD2	92255	broad.mit.edu	37	5	36142595	36142596	+	Intron	INS	-	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMLN	89782	broad.mit.edu	37	3	197687369	197687369	+	Intron	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LNPEP	4012	broad.mit.edu	37	5	96315308	96315308	+	Silent	SNP	A	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100130331	100130331	broad.mit.edu	37	1	238090465	238090465	+	RNA	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100272228	100272228	broad.mit.edu	37	X	149284157	149284157	+	Intron	SNP	A	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC646214	646214	broad.mit.edu	37	15	21937336	21937336	+	RNA	SNP	T	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC646214	646214	broad.mit.edu	37	15	21937874	21937874	+	RNA	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC727924	727924	broad.mit.edu	37	15	22298085	22298085	+	Intron	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOXL4	84171	broad.mit.edu	37	10	100015439	100015439	+	Missense_Mutation	SNP	G	A	A	rs149982668		TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPA	4018	broad.mit.edu	37	6	160963894	160963894	+	Intron	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN2	23266	broad.mit.edu	37	1	82437443	82437443	+	Intron	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRFN2	57497	broad.mit.edu	37	6	40399544	40399544	+	Silent	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRIT3	345193	broad.mit.edu	37	4	110790750	110790750	+	Intron	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141032006	141032006	+	Missense_Mutation	SNP	C	A	A	rs150457308	byFrequency	TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141108485	141108485	+	Missense_Mutation	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141201814	141201814	+	Intron	SNP	T	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141294231	141294231	+	Missense_Mutation	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141707803	141707803	+	Splice_Site	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC37A3	374819	broad.mit.edu	37	17	62856473	62856473	+	Missense_Mutation	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC4C	57689	broad.mit.edu	37	11	40136099	40136100	+	Nonsense_Mutation	DNP	CC	AA	AA			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC4C	57689	broad.mit.edu	37	11	40136282	40136282	+	Missense_Mutation	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC7	57554	broad.mit.edu	37	1	70478698	70478698	+	Silent	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYST	1130	broad.mit.edu	37	1	235865984	235865984	+	Intron	SNP	T	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MACF1	23499	broad.mit.edu	37	1	39801748	39801748	+	Missense_Mutation	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MACF1	23499	broad.mit.edu	37	1	39847539	39847539	+	Intron	DEL	C	-	-			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEB16	139604	broad.mit.edu	37	X	35820657	35820657	+	Missense_Mutation	SNP	A	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP2K3	5606	broad.mit.edu	37	17	21208257	21208257	+	Intron	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP7D2	256714	broad.mit.edu	37	X	20031771	20031771	+	Intron	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP9	79884	broad.mit.edu	37	4	156289877	156289877	+	Missense_Mutation	SNP	T	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCO	8685	broad.mit.edu	37	2	119739909	119739909	+	Intron	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAS1	4142	broad.mit.edu	37	6	160328457	160328457	+	Missense_Mutation	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MBTPS2	51360	broad.mit.edu	37	X	21900704	21900704	+	Silent	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCCC1	56922	broad.mit.edu	37	3	182789019	182789019	+	Silent	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCOLN2	255231	broad.mit.edu	37	1	85422360	85422360	+	Intron	SNP	T	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDN1	23195	broad.mit.edu	37	6	90402561	90402561	+	Silent	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED12L	116931	broad.mit.edu	37	3	151105632	151105633	+	Missense_Mutation	DNP	CG	TT	TT			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED8	112950	broad.mit.edu	37	1	43855444	43855444	+	5'UTR	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
METTL3	56339	broad.mit.edu	37	14	21971304	21971304	+	Intron	SNP	C	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAM	8972	broad.mit.edu	37	7	141750533	141750533	+	Nonsense_Mutation	SNP	A	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGA	23269	broad.mit.edu	37	15	42041756	42041756	+	Missense_Mutation	SNP	T	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGC42105	167359	broad.mit.edu	37	5	43280023	43280023	+	Intron	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGEA5	10724	broad.mit.edu	37	10	103567562	103567562	+	Missense_Mutation	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIPOL1	145282	broad.mit.edu	37	14	37838830	37838830	+	Splice_Site	SNP	G	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLLT4	4301	broad.mit.edu	37	6	168315423	168315423	+	Intron	DEL	G	-	-			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOV10L1	54456	broad.mit.edu	37	22	50582321	50582321	+	Intron	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPND	84954	broad.mit.edu	37	19	4355070	4355070	+	Intron	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRC1	4360	broad.mit.edu	37	10	17891798	17891798	+	Intron	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRM1	79922	broad.mit.edu	37	17	34958194	34958194	+	5'UTR	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A14	84689	broad.mit.edu	37	11	60150531	60150531	+	Intron	SNP	T	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSR1	4481	broad.mit.edu	37	8	16026396	16026396	+	Intron	SNP	A	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTA1	9112	broad.mit.edu	37	14	105916508	105916508	+	Missense_Mutation	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTAP	4507	broad.mit.edu	37	9	22006336	22006336	+	Intron	SNP	A	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTMR12	54545	broad.mit.edu	37	5	32235040	32235040	+	Intron	SNP	T	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTRR	4552	broad.mit.edu	37	5	7869242	7869242	+	5'UTR	SNP	C	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC21	394263	broad.mit.edu	37	6	30955259	30955259	+	Missense_Mutation	SNP	C	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC7	4589	broad.mit.edu	37	4	71347098	71347098	+	Missense_Mutation	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYB	4602	broad.mit.edu	37	6	135521439	135521439	+	Silent	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH11	4629	broad.mit.edu	37	16	15811192	15811192	+	Missense_Mutation	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH4	4622	broad.mit.edu	37	17	10366498	10366498	+	Silent	SNP	T	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH6	4624	broad.mit.edu	37	14	23861994	23861994	+	Intron	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO15A	51168	broad.mit.edu	37	17	18030044	18030044	+	Intron	SNP	A	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO18A	399687	broad.mit.edu	37	17	27438885	27438885	+	Intron	SNP	C	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO3A	53904	broad.mit.edu	37	10	26501001	26501001	+	3'UTR	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO7A	4647	broad.mit.edu	37	11	76867145	76867145	+	Intron	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOM2	9172	broad.mit.edu	37	8	2017597	2017597	+	Silent	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOM3	127294	broad.mit.edu	37	1	24401721	24401721	+	Intron	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NADK	65220	broad.mit.edu	37	1	1687735	1687735	+	Missense_Mutation	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCF4	4689	broad.mit.edu	37	22	37273714	37273714	+	Missense_Mutation	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCKIPSD	51517	broad.mit.edu	37	3	48719696	48719696	+	Intron	SNP	T	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDST3	9348	broad.mit.edu	37	4	119036144	119036144	+	Intron	SNP	T	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDUFA13	51079	broad.mit.edu	37	19	19646177	19646177	+	Missense_Mutation	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NECAB2	54550	broad.mit.edu	37	16	84014588	84014588	+	Intron	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEIL3	55247	broad.mit.edu	37	4	178274978	178274978	+	Intron	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEK11	79858	broad.mit.edu	37	3	130992400	130992400	+	Missense_Mutation	SNP	A	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL1	4745	broad.mit.edu	37	11	20691366	20691366	+	Intron	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL2	4753	broad.mit.edu	37	12	45168672	45168672	+	Intron	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEU1	4758	broad.mit.edu	37	6	31827407	31827407	+	3'UTR	SNP	T	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NID1	4811	broad.mit.edu	37	1	236148585	236148585	+	Intron	SNP	G	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NID1	4811	broad.mit.edu	37	1	236212142	236212142	+	Missense_Mutation	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NINL	22981	broad.mit.edu	37	20	25493691	25493691	+	Intron	SNP	G	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLGN1	22871	broad.mit.edu	37	3	173993119	173993119	+	Missense_Mutation	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP12	91662	broad.mit.edu	37	19	54313990	54313990	+	Missense_Mutation	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP13	126204	broad.mit.edu	37	19	56436478	56436478	+	Intron	SNP	G	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP14	338323	broad.mit.edu	37	11	7059854	7059854	+	Missense_Mutation	SNP	T	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP5	126206	broad.mit.edu	37	19	56544081	56544081	+	Missense_Mutation	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NNMT	4837	broad.mit.edu	37	11	114167428	114167428	+	Silent	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOC3L	64318	broad.mit.edu	37	10	96116774	96116774	+	Intron	SNP	T	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOS1AP	9722	broad.mit.edu	37	1	162124198	162124198	+	Missense_Mutation	SNP	G	T	T	rs141560292		TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOS1	4842	broad.mit.edu	37	12	117693640	117693640	+	Intron	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOTCH1	4851	broad.mit.edu	37	9	139395153	139395153	+	Nonsense_Mutation	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPHS2	7827	broad.mit.edu	37	1	179533922	179533922	+	Missense_Mutation	SNP	T	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPNT	255743	broad.mit.edu	37	4	106861809	106861809	+	Intron	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NR4A2	4929	broad.mit.edu	37	2	157184934	157184934	+	Missense_Mutation	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRG1	3084	broad.mit.edu	37	8	32621438	32621438	+	Missense_Mutation	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUBPL	80224	broad.mit.edu	37	14	32328285	32328285	+	Intron	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUDCD3	23386	broad.mit.edu	37	7	44467135	44467135	+	Intron	SNP	T	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP153	9972	broad.mit.edu	37	6	17688767	17688767	+	Missense_Mutation	SNP	A	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP214	8021	broad.mit.edu	37	9	134003738	134003738	+	Missense_Mutation	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXF2B	728343	broad.mit.edu	37	X	101581408	101581408	+	Missense_Mutation	SNP	G	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXN	64359	broad.mit.edu	37	17	706870	706870	+	Intron	SNP	C	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OCA2	4948	broad.mit.edu	37	15	28230271	28230271	+	Missense_Mutation	SNP	C	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OGDHL	55753	broad.mit.edu	37	10	50964749	50964749	+	Intron	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPRM1	4988	broad.mit.edu	37	6	154412083	154412083	+	Intron	SNP	C	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPTC	26254	broad.mit.edu	37	1	203467947	203467947	+	Missense_Mutation	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10R2	343406	broad.mit.edu	37	1	158450117	158450117	+	Silent	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10V1	390201	broad.mit.edu	37	11	59481123	59481123	+	Missense_Mutation	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR13C5	138799	broad.mit.edu	37	9	107361805	107361805	+	5'Flank	SNP	A	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR14I1	401994	broad.mit.edu	37	1	248844994	248844994	+	Silent	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1J2	26740	broad.mit.edu	37	9	125273352	125273352	+	Missense_Mutation	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1S2	219958	broad.mit.edu	37	11	57970940	57970940	+	Silent	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2C3	81472	broad.mit.edu	37	1	247695586	247695586	+	Silent	SNP	C	G	G	rs143777369		TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2J2	26707	broad.mit.edu	37	6	29141566	29141566	+	Missense_Mutation	SNP	G	T	T	rs141015719	by1000genomes	TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L3	391192	broad.mit.edu	37	1	248224182	248224182	+	Missense_Mutation	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2M5	127059	broad.mit.edu	37	1	248309310	248309310	+	Silent	SNP	C	A	A	rs150067628	byFrequency	TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T27	403239	broad.mit.edu	37	1	248814155	248814155	+	Missense_Mutation	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T4	127074	broad.mit.edu	37	1	248525191	248525191	+	Missense_Mutation	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4A5	81318	broad.mit.edu	37	11	51411896	51411896	+	Missense_Mutation	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C15	81309	broad.mit.edu	37	11	55322792	55322792	+	Missense_Mutation	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4K13	390433	broad.mit.edu	37	14	20502513	20502513	+	Silent	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4N3P	390539	broad.mit.edu	37	15	22413894	22413894	+	Missense_Mutation	SNP	A	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52A4	390053	broad.mit.edu	37	11	5142720	5142721	+	Frame_Shift_Ins	INS	-	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR56B1	387748	broad.mit.edu	37	11	5757979	5757979	+	Missense_Mutation	SNP	T	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6C6	283365	broad.mit.edu	37	12	55688394	55688394	+	Missense_Mutation	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR9G4	283189	broad.mit.edu	37	11	56510794	56510794	+	Missense_Mutation	SNP	A	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSTN	344901	broad.mit.edu	37	3	190930341	190930341	+	Missense_Mutation	SNP	C	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTOR	56914	broad.mit.edu	37	20	16730683	16730683	+	Intron	SNP	G	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P704P	641455	broad.mit.edu	37	14	19990791	19990791	+	Intron	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PACRG	135138	broad.mit.edu	37	6	163235407	163235407	+	Intron	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPD4	167153	broad.mit.edu	37	5	78975502	78975502	+	Intron	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176564366	176564366	+	Silent	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176760628	176760628	+	Intron	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAR4	347745	broad.mit.edu	37	15	25455185	25455185	+	Intron	SNP	A	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARD3B	117583	broad.mit.edu	37	2	206036920	206036920	+	Intron	SNP	T	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARD6B	84612	broad.mit.edu	37	20	49366995	49366997	+	In_Frame_Del	DEL	AGA	-	-			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCBP2	5094	broad.mit.edu	37	12	53852848	53852848	+	Intron	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	56287633	56287633	+	Silent	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH17	27253	broad.mit.edu	37	13	58206676	58206676	+	5'UTR	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB14	56122	broad.mit.edu	37	5	140603219	140603219	+	Missense_Mutation	SNP	C	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA8	9708	broad.mit.edu	37	5	140774305	140774305	+	Missense_Mutation	SNP	T	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCLO	27445	broad.mit.edu	37	7	82585020	82585020	+	Missense_Mutation	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCNXL3	399909	broad.mit.edu	37	11	65384017	65384017	+	Intron	SNP	T	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCNX	22990	broad.mit.edu	37	14	71444699	71444699	+	Missense_Mutation	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE7B	27115	broad.mit.edu	37	6	136476908	136476908	+	Intron	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDSS2	57107	broad.mit.edu	37	6	107533454	107533454	+	Silent	SNP	C	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZD7	79955	broad.mit.edu	37	10	102781973	102781973	+	Missense_Mutation	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZD9	255762	broad.mit.edu	37	16	21999804	21999804	+	Intron	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEX7	5191	broad.mit.edu	37	6	137191109	137191109	+	Missense_Mutation	SNP	C	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGAP1	80055	broad.mit.edu	37	2	197708759	197708759	+	Missense_Mutation	SNP	T	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGBD1	84547	broad.mit.edu	37	6	28269749	28269749	+	Silent	SNP	A	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGC	5225	broad.mit.edu	37	6	41708341	41708341	+	Missense_Mutation	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGM1	5236	broad.mit.edu	37	1	64104534	64104534	+	Intron	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHEX	5251	broad.mit.edu	37	X	22115063	22115063	+	Intron	SNP	T	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF2	5253	broad.mit.edu	37	9	96416955	96416955	+	Intron	SNP	T	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PID1	55022	broad.mit.edu	37	2	229890308	229890308	+	3'UTR	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIF1	80119	broad.mit.edu	37	15	65108869	65108869	+	Silent	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3C2G	5288	broad.mit.edu	37	12	18435367	18435367	+	Nonsense_Mutation	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3CD	5293	broad.mit.edu	37	1	9782022	9782022	+	Intron	SNP	C	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PION	54103	broad.mit.edu	37	7	77016752	77016752	+	Missense_Mutation	SNP	C	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1L1	93035	broad.mit.edu	37	8	110448511	110448511	+	Intron	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1L1	93035	broad.mit.edu	37	8	110527554	110527554	+	Intron	SNP	A	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1	5314	broad.mit.edu	37	6	51918982	51918982	+	Intron	SNP	T	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKIB	5570	broad.mit.edu	37	6	123039058	123039062	+	Frame_Shift_Del	DEL	ACGGA	-	-	rs148112687		TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKNOX2	63876	broad.mit.edu	37	11	125221151	125221151	+	Intron	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB4	5332	broad.mit.edu	37	20	9388751	9388751	+	Intron	SNP	T	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCG2	5336	broad.mit.edu	37	16	81953109	81953109	+	Missense_Mutation	SNP	A	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCL2	23228	broad.mit.edu	37	3	17051999	17051999	+	Silent	SNP	A	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHB2	55041	broad.mit.edu	37	2	131949186	131949186	+	Intron	SNP	G	C	C	rs13002136		TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHB2	55041	broad.mit.edu	37	2	131951756	131951756	+	Intron	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHH3	79990	broad.mit.edu	37	17	40826062	40826062	+	Intron	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHM1	9842	broad.mit.edu	37	17	43552468	43552468	+	Missense_Mutation	SNP	T	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEK	5341	broad.mit.edu	37	2	68607461	68607461	+	Missense_Mutation	SNP	G	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLG	5340	broad.mit.edu	37	6	161135923	161135923	+	Missense_Mutation	SNP	C	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLOD1	5351	broad.mit.edu	37	1	12012720	12012720	+	Silent	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLUNC	51297	broad.mit.edu	37	20	31827875	31827875	+	Intron	SNP	T	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNLIPRP1	5407	broad.mit.edu	37	10	118355692	118355693	+	Intron	INS	-	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLE	5426	broad.mit.edu	37	12	133225372	133225372	+	Intron	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLI	11201	broad.mit.edu	37	18	51820115	51820115	+	Nonsense_Mutation	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLN	353497	broad.mit.edu	37	4	2129883	2129883	+	Missense_Mutation	SNP	C	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR2A	5430	broad.mit.edu	37	17	7402375	7402375	+	Silent	SNP	T	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR2E	5434	broad.mit.edu	37	19	1095300	1095300	+	Silent	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POSTN	10631	broad.mit.edu	37	13	38158289	38158289	+	Intron	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEG	404785	broad.mit.edu	37	14	19553542	19553542	+	Missense_Mutation	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEH	23784	broad.mit.edu	37	22	16279187	16279187	+	Intron	SNP	A	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPM1B	5495	broad.mit.edu	37	2	44428593	44428593	+	Silent	SNP	T	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R13L	10848	broad.mit.edu	37	19	45883657	45883657	+	Intron	SNP	T	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R1C	151242	broad.mit.edu	37	2	182825954	182825954	+	Intron	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP3CB	5532	broad.mit.edu	37	10	75214372	75214372	+	Intron	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP3R2	5535	broad.mit.edu	37	9	104357257	104357257	+	5'UTR	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PQLC1	80148	broad.mit.edu	37	18	77693994	77693994	+	Missense_Mutation	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRAMEF4	400735	broad.mit.edu	37	1	12941574	12941574	+	Intron	SNP	C	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREPL	9581	broad.mit.edu	37	2	44556018	44556018	+	Intron	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX1	57580	broad.mit.edu	37	20	47273727	47273727	+	Splice_Site	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX1	57580	broad.mit.edu	37	20	47361594	47361594	+	Missense_Mutation	SNP	G	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX2	80243	broad.mit.edu	37	8	68942699	68942699	+	Intron	SNP	C	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRG4	10216	broad.mit.edu	37	1	186277271	186277271	+	Missense_Mutation	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIM2	5558	broad.mit.edu	37	6	57398013	57398013	+	Intron	SNP	C	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKAA1	5562	broad.mit.edu	37	5	40764924	40764924	+	Missense_Mutation	SNP	C	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKAB1	5564	broad.mit.edu	37	12	120112112	120112112	+	Intron	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCB	5579	broad.mit.edu	37	16	24202572	24202572	+	Intron	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCD	5580	broad.mit.edu	37	3	53218869	53218869	+	Intron	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCG	5582	broad.mit.edu	37	19	54401741	54401741	+	Missense_Mutation	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKD1	5587	broad.mit.edu	37	14	30103587	30103587	+	Intron	SNP	A	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKD3	23683	broad.mit.edu	37	2	37513418	37513418	+	Missense_Mutation	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRPH2	5961	broad.mit.edu	37	6	42689590	42689590	+	Silent	SNP	G	T	T	rs76989855	byFrequency;by1000genomes	TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRPS2	5634	broad.mit.edu	37	X	12837535	12837535	+	Intron	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRR12	57479	broad.mit.edu	37	19	50099342	50099342	+	Nonsense_Mutation	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRR14	78994	broad.mit.edu	37	16	30664444	30664444	+	Intron	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRRG3	79057	broad.mit.edu	37	X	150867323	150867323	+	Intron	SNP	T	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS54	221191	broad.mit.edu	37	16	58318638	58318638	+	Intron	SNP	A	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMD12	5718	broad.mit.edu	37	17	65362551	65362551	+	Missense_Mutation	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSME3	10197	broad.mit.edu	37	17	40991043	40991043	+	Intron	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTF1A	256297	broad.mit.edu	37	10	23481565	23481565	+	Missense_Mutation	SNP	C	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTGES3	10728	broad.mit.edu	37	12	57058542	57058542	+	Intron	SNP	C	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTGIS	5740	broad.mit.edu	37	20	48129765	48129765	+	Missense_Mutation	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN12	5782	broad.mit.edu	37	7	77212829	77212829	+	Intron	SNP	G	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN18	26469	broad.mit.edu	37	2	131116683	131116683	+	Intron	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN23	25930	broad.mit.edu	37	3	47448253	47448253	+	Intron	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRB	5787	broad.mit.edu	37	12	70954367	70954367	+	Intron	SNP	T	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRC	5788	broad.mit.edu	37	1	198711119	198711119	+	Missense_Mutation	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRG	5793	broad.mit.edu	37	3	62153637	62153637	+	Intron	SNP	C	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRH	5794	broad.mit.edu	37	19	55716650	55716650	+	Intron	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	40790092	40790092	+	Missense_Mutation	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PVRL1	5818	broad.mit.edu	37	11	119545336	119545336	+	Intron	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PVRL2	5819	broad.mit.edu	37	19	45381862	45381862	+	Intron	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXDNL	137902	broad.mit.edu	37	8	52321964	52321964	+	Silent	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PYROXD1	79912	broad.mit.edu	37	12	21593274	21593274	+	Intron	SNP	A	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PZP	5858	broad.mit.edu	37	12	9305864	9305864	+	Missense_Mutation	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PZP	5858	broad.mit.edu	37	12	9309677	9309677	+	Intron	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
QKI	9444	broad.mit.edu	37	6	163991561	163991561	+	Intron	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB19	401409	broad.mit.edu	37	7	140125516	140125516	+	Intron	SNP	C	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RACGAP1P	83956	broad.mit.edu	37	12	45458235	45458235	+	RNA	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAG1	5896	broad.mit.edu	37	11	36596365	36596365	+	Missense_Mutation	SNP	A	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAG1	5896	broad.mit.edu	37	11	36597145	36597145	+	Missense_Mutation	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALGPS2	55103	broad.mit.edu	37	1	178834026	178834026	+	Intron	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAVER1	125950	broad.mit.edu	37	19	10433905	10433905	+	Nonsense_Mutation	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RB1	5925	broad.mit.edu	37	13	48954377	48954377	+	Nonsense_Mutation	SNP	A	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM19	9904	broad.mit.edu	37	12	114261162	114261162	+	Intron	SNP	A	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RCOR3	55758	broad.mit.edu	37	1	211468956	211468956	+	Intron	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RECQL4	9401	broad.mit.edu	37	8	145742150	145742150	+	Splice_Site	SNP	T	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG1B	5968	broad.mit.edu	37	2	79313628	79313628	+	Silent	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG1B	5968	broad.mit.edu	37	2	79313955	79313955	+	Missense_Mutation	SNP	T	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG3A	5068	broad.mit.edu	37	2	79385629	79385629	+	Intron	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REPS1	85021	broad.mit.edu	37	6	139262401	139262402	+	Intron	INS	-	TT	TT			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFWD3	55159	broad.mit.edu	37	16	74664672	74664672	+	Intron	SNP	T	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFX3	5991	broad.mit.edu	37	9	3275463	3275463	+	Intron	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFX4	5992	broad.mit.edu	37	12	107080751	107080751	+	Missense_Mutation	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGPD4	285190	broad.mit.edu	37	2	108487374	108487383	+	Frame_Shift_Del	DEL	TTTGCAGATG	-	-			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS18	64407	broad.mit.edu	37	1	192127743	192127743	+	5'UTR	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS7	6000	broad.mit.edu	37	1	240978226	240978226	+	Intron	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS8	85397	broad.mit.edu	37	1	182615840	182615840	+	3'UTR	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RILPL1	353116	broad.mit.edu	37	12	123983237	123983237	+	Missense_Mutation	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMBP2	23504	broad.mit.edu	37	12	130890816	130890816	+	Intron	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMBP2	23504	broad.mit.edu	37	12	130897369	130897369	+	Intron	SNP	T	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RMND5A	64795	broad.mit.edu	37	2	87113623	87113623	+	Intron	SNP	T	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF144A	9781	broad.mit.edu	37	2	7154836	7154836	+	Intron	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF160	26046	broad.mit.edu	37	21	30308959	30308959	+	Missense_Mutation	SNP	G	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF160	26046	broad.mit.edu	37	21	30331753	30331753	+	Intron	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF19A	25897	broad.mit.edu	37	8	101276385	101276385	+	Missense_Mutation	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF20	56254	broad.mit.edu	37	9	104323348	104323348	+	Intron	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROPN1	54763	broad.mit.edu	37	3	123699399	123699399	+	5'UTR	SNP	A	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPAP1	26015	broad.mit.edu	37	15	41827925	41827925	+	Intron	SNP	A	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL11	6135	broad.mit.edu	37	1	24020265	24020265	+	Intron	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS6KB2	6199	broad.mit.edu	37	11	67199988	67199988	+	Intron	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPTOR	57521	broad.mit.edu	37	17	78882417	78882417	+	Intron	SNP	A	T	T	rs78073796	by1000genomes	TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSF1	51773	broad.mit.edu	37	11	77445589	77445589	+	Intron	SNP	T	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTBDN	83546	broad.mit.edu	37	19	12939665	12939665	+	Intron	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237551449	237551449	+	Missense_Mutation	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237789019	237789019	+	Silent	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237972319	237972319	+	Missense_Mutation	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAA3P	6290	broad.mit.edu	37	11	18134834	18134834	+	RNA	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SACS	26278	broad.mit.edu	37	13	23914212	23914212	+	Missense_Mutation	SNP	T	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SALL1	6299	broad.mit.edu	37	16	51174340	51174340	+	Missense_Mutation	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMD10	140700	broad.mit.edu	37	20	62608630	62608630	+	Missense_Mutation	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMD7	344658	broad.mit.edu	37	3	169644740	169644740	+	Missense_Mutation	SNP	A	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SARM1	23098	broad.mit.edu	37	17	26687997	26687997	+	Intron	SNP	A	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SARS	6301	broad.mit.edu	37	1	109774338	109774338	+	Missense_Mutation	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN11A	11280	broad.mit.edu	37	3	38908896	38908896	+	Silent	SNP	T	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN1A	6323	broad.mit.edu	37	2	166866437	166866437	+	Intron	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN3A	6328	broad.mit.edu	37	2	165984655	165984655	+	Intron	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN9A	6335	broad.mit.edu	37	2	167145088	167145088	+	Silent	SNP	A	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCNN1D	6339	broad.mit.edu	37	1	1223004	1223004	+	Intron	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDK2	54549	broad.mit.edu	37	17	71412116	71412116	+	Silent	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC22A	26984	broad.mit.edu	37	3	122928165	122928165	+	Missense_Mutation	SNP	G	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SELE	6401	broad.mit.edu	37	1	169694839	169694839	+	Intron	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SELO	83642	broad.mit.edu	37	22	50646965	50646965	+	Missense_Mutation	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA4F	10505	broad.mit.edu	37	2	74902162	74902162	+	Missense_Mutation	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERINC3	10955	broad.mit.edu	37	20	43138621	43138621	+	Missense_Mutation	SNP	T	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINA3	12	broad.mit.edu	37	14	95088688	95088688	+	Missense_Mutation	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB12	89777	broad.mit.edu	37	18	61223420	61223420	+	Missense_Mutation	SNP	A	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB3	6317	broad.mit.edu	37	18	61325701	61325701	+	Intron	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETD4	54093	broad.mit.edu	37	21	37416253	37416263	+	Splice_Site	DEL	ACCTAGAAAGA	-	-			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETDB1	9869	broad.mit.edu	37	1	150933451	150933451	+	Silent	SNP	T	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETX	23064	broad.mit.edu	37	9	135206681	135206681	+	Missense_Mutation	SNP	T	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFXN4	119559	broad.mit.edu	37	10	120923759	120923759	+	Intron	SNP	G	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHKBP1	92799	broad.mit.edu	37	19	41083072	41083072	+	Intron	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHMT2	6472	broad.mit.edu	37	12	57627019	57627019	+	Missense_Mutation	SNP	G	T	T	rs139092594		TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIM1	6492	broad.mit.edu	37	6	100838549	100838549	+	Silent	SNP	C	T	T	rs151274826		TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164760714	164760714	+	Intron	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SKAP1	8631	broad.mit.edu	37	17	46239860	46239860	+	Silent	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC15A1	6564	broad.mit.edu	37	13	99364873	99364874	+	Intron	DNP	GG	TT	TT			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A14	9016	broad.mit.edu	37	X	129479160	129479160	+	Missense_Mutation	SNP	A	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC29A3	55315	broad.mit.edu	37	10	73111446	73111446	+	Missense_Mutation	SNP	T	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC2A8	29988	broad.mit.edu	37	9	130168428	130168428	+	Intron	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC36A1	206358	broad.mit.edu	37	5	150856278	150856278	+	Missense_Mutation	SNP	A	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC36A3	285641	broad.mit.edu	37	5	150663556	150663556	+	Intron	SNP	A	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC38A2	54407	broad.mit.edu	37	12	46758520	46758520	+	Intron	SNP	T	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC46A3	283537	broad.mit.edu	37	13	29287437	29287437	+	Missense_Mutation	SNP	A	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A1AP	22950	broad.mit.edu	37	2	27891686	27891686	+	Intron	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A5	57835	broad.mit.edu	37	2	74491340	74491340	+	Missense_Mutation	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC7A10	56301	broad.mit.edu	37	19	33702100	33702100	+	Intron	DEL	C	-	-			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC8A1	6546	broad.mit.edu	37	2	40392221	40392221	+	Intron	SNP	T	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC8A1	6546	broad.mit.edu	37	2	40402050	40402050	+	Intron	SNP	C	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A10	285335	broad.mit.edu	37	3	111927123	111927123	+	Missense_Mutation	SNP	T	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A11	284525	broad.mit.edu	37	1	173486708	173486708	+	Nonsense_Mutation	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A11	284525	broad.mit.edu	37	1	173516881	173516881	+	Missense_Mutation	SNP	T	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A3	6550	broad.mit.edu	37	5	479956	479956	+	Missense_Mutation	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO1C1	53919	broad.mit.edu	37	12	20868014	20868014	+	Intron	SNP	T	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO6A1	133482	broad.mit.edu	37	5	101834600	101834600	+	5'UTR	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT1	6585	broad.mit.edu	37	10	98799639	98799639	+	Intron	SNP	T	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK3	22865	broad.mit.edu	37	3	164906953	164906953	+	Nonsense_Mutation	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMARCA4	6597	broad.mit.edu	37	19	11170531	11170531	+	Nonsense_Mutation	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMARCE1	6605	broad.mit.edu	37	17	38787077	38787077	+	Missense_Mutation	SNP	C	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMC1A	8243	broad.mit.edu	37	X	53438545	53438546	+	Intron	INS	-	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNAP91	9892	broad.mit.edu	37	6	84375117	84375117	+	Intron	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNF8	11267	broad.mit.edu	37	17	47014565	47014565	+	Intron	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNRNP200	23020	broad.mit.edu	37	2	96943347	96943347	+	Nonsense_Mutation	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTG2	54221	broad.mit.edu	37	2	1251177	1251177	+	Missense_Mutation	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX14	57231	broad.mit.edu	37	6	86227869	86227869	+	Intron	SNP	T	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOX5	6660	broad.mit.edu	37	12	23716278	23716278	+	Nonsense_Mutation	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOX6	55553	broad.mit.edu	37	11	16340103	16340103	+	Missense_Mutation	SNP	T	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP140	11262	broad.mit.edu	37	2	231159056	231159056	+	Intron	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPACA3	124912	broad.mit.edu	37	17	31323984	31323984	+	Missense_Mutation	SNP	C	T	T	rs143361724	byFrequency	TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG17	200162	broad.mit.edu	37	1	118609489	118609489	+	Missense_Mutation	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG6	9576	broad.mit.edu	37	10	22657676	22657676	+	Intron	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA2	9825	broad.mit.edu	37	20	48525018	48525018	+	Missense_Mutation	SNP	G	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEF2	79925	broad.mit.edu	37	5	35807185	35807185	+	Intron	SNP	C	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPINLW1	57119	broad.mit.edu	37	20	44170914	44170914	+	Intron	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPOCD1	90853	broad.mit.edu	37	1	32263952	32263952	+	Intron	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPOP	8405	broad.mit.edu	37	17	47696724	47696725	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158612648	158612648	+	Missense_Mutation	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158624419	158624419	+	Silent	SNP	C	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158636289	158636289	+	Splice_Site	SNP	T	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158646201	158646201	+	Intron	SNP	T	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRCAP	10847	broad.mit.edu	37	16	30712111	30712111	+	5'UTR	SNP	T	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRPK1	6732	broad.mit.edu	37	6	35842080	35842080	+	Missense_Mutation	SNP	A	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSH1	54434	broad.mit.edu	37	12	109182837	109182837	+	Missense_Mutation	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSU72	29101	broad.mit.edu	37	1	1500234	1500234	+	Missense_Mutation	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAB2	55576	broad.mit.edu	37	12	103984725	103984725	+	Silent	SNP	A	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAB2	55576	broad.mit.edu	37	12	104054003	104054003	+	Intron	SNP	A	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAB2	55576	broad.mit.edu	37	12	104064447	104064447	+	Intron	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAG1	10274	broad.mit.edu	37	3	136240070	136240070	+	Missense_Mutation	SNP	T	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAG3	10734	broad.mit.edu	37	7	99786109	99786109	+	Missense_Mutation	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAU1	6780	broad.mit.edu	37	20	47739709	47739709	+	Missense_Mutation	SNP	G	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STIM2	57620	broad.mit.edu	37	4	27010119	27010119	+	Missense_Mutation	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STOX1	219736	broad.mit.edu	37	10	70645895	70645896	+	Frame_Shift_Ins	INS	-	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STX18	53407	broad.mit.edu	37	4	4425353	4425353	+	Intron	SNP	C	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STX7	8417	broad.mit.edu	37	6	132785215	132785215	+	Splice_Site	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STXBP5	134957	broad.mit.edu	37	6	147588262	147588262	+	Missense_Mutation	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULF1	23213	broad.mit.edu	37	8	70488248	70488249	+	Frame_Shift_Ins	INS	-	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUPT5H	6829	broad.mit.edu	37	19	39967129	39967129	+	3'UTR	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SVOP	55530	broad.mit.edu	37	12	109306364	109306364	+	Frame_Shift_Del	DEL	G	-	-			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYCP1	6847	broad.mit.edu	37	1	115420834	115420834	+	Intron	SNP	A	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYCP2	10388	broad.mit.edu	37	20	58461889	58461889	+	Missense_Mutation	SNP	T	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152647436	152647436	+	Missense_Mutation	SNP	C	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152763126	152763126	+	Intron	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT2	127833	broad.mit.edu	37	1	202565790	202565790	+	3'UTR	SNP	A	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT6	148281	broad.mit.edu	37	1	114680557	114680557	+	Missense_Mutation	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAAR5	9038	broad.mit.edu	37	6	132909899	132909899	+	Nonsense_Mutation	SNP	G	T	T	rs144431699	by1000genomes	TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAC3	6866	broad.mit.edu	37	12	57407195	57407195	+	Intron	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TANC1	85461	broad.mit.edu	37	2	159913269	159913269	+	Intron	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TARS	6897	broad.mit.edu	37	5	33457241	33457241	+	Intron	SNP	A	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TARS	6897	broad.mit.edu	37	5	33457373	33457373	+	Silent	SNP	G	C	C	rs113811412		TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAS2R14	50840	broad.mit.edu	37	12	11091748	11091748	+	Missense_Mutation	SNP	C	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D10B	26000	broad.mit.edu	37	16	30376830	30376830	+	Missense_Mutation	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D8B	54885	broad.mit.edu	37	X	106092442	106092442	+	Intron	SNP	A	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBCD	6904	broad.mit.edu	37	17	80879532	80879532	+	Intron	SNP	A	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX19	9095	broad.mit.edu	37	1	168278154	168278154	+	Intron	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX22	50945	broad.mit.edu	37	X	79283612	79283612	+	Intron	SNP	A	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBXAS1	6916	broad.mit.edu	37	7	139575332	139575332	+	Intron	SNP	A	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCEB3B	51224	broad.mit.edu	37	18	44559841	44559841	+	Missense_Mutation	SNP	G	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCTEX1D1	200132	broad.mit.edu	37	1	67243186	67243186	+	3'UTR	SNP	T	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDRD5	163589	broad.mit.edu	37	1	179587773	179587773	+	Missense_Mutation	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TECPR2	9895	broad.mit.edu	37	14	102881178	102881178	+	Intron	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEP1	7011	broad.mit.edu	37	14	20848649	20848649	+	Intron	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGM6	343641	broad.mit.edu	37	20	2411435	2411435	+	Intron	SNP	G	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGM6	343641	broad.mit.edu	37	20	2411636	2411636	+	Missense_Mutation	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THBS2	7058	broad.mit.edu	37	6	169621664	169621664	+	Intron	SNP	G	T	T	rs113861243		TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TM4SF20	79853	broad.mit.edu	37	2	228235653	228235653	+	Missense_Mutation	SNP	G	A	A	rs138005777		TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMCO4	255104	broad.mit.edu	37	1	20009765	20009765	+	Missense_Mutation	SNP	T	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM195	392636	broad.mit.edu	37	7	15458244	15458244	+	Missense_Mutation	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS11B	132724	broad.mit.edu	37	4	69097043	69097043	+	Silent	SNP	T	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS15	5651	broad.mit.edu	37	21	19776068	19776068	+	5'Flank	SNP	A	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175306575	175306575	+	Intron	SNP	G	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175331943	175331944	+	Nonsense_Mutation	DNP	CC	AA	AA			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNS4	84951	broad.mit.edu	37	17	38643789	38643789	+	Intron	SNP	G	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53BP1	7158	broad.mit.edu	37	15	43739760	43739760	+	Intron	SNP	A	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7577559	7577559	+	Missense_Mutation	SNP	G	A	A	rs28934573		TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPH2	121278	broad.mit.edu	37	12	72338118	72338118	+	Silent	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPP2	7174	broad.mit.edu	37	13	103249312	103249312	+	5'UTR	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE2	93492	broad.mit.edu	37	13	20049553	20049553	+	Intron	SNP	A	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10916337	10916337	+	Intron	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAM1	23471	broad.mit.edu	37	8	71510383	71510383	+	Missense_Mutation	SNP	C	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAPPC9	83696	broad.mit.edu	37	8	141321324	141321324	+	Intron	SNP	C	A	A	rs11994830	by1000genomes	TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRDMT1	1787	broad.mit.edu	37	10	17199442	17199442	+	Missense_Mutation	SNP	T	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM9	114088	broad.mit.edu	37	14	51475753	51475753	+	Intron	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIT1	54802	broad.mit.edu	37	1	40307580	40307580	+	Missense_Mutation	SNP	T	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPC4AP	26133	broad.mit.edu	37	20	33593689	33593689	+	Intron	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRY6	154754	broad.mit.edu	37	7	142481339	142481339	+	Missense_Mutation	SNP	A	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSLP	85480	broad.mit.edu	37	5	110407453	110407454	+	5'UTR	DNP	GG	TT	TT			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSNAX-DISC1	100303453	broad.mit.edu	37	1	231665135	231665135	+	Intron	DEL	G	-	-			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSSC1	7260	broad.mit.edu	37	2	3196338	3196338	+	Missense_Mutation	SNP	C	A	A	rs143510261		TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSSK1B	83942	broad.mit.edu	37	5	112770281	112770281	+	Missense_Mutation	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTBK1	84630	broad.mit.edu	37	6	43226967	43226967	+	Missense_Mutation	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC19	54902	broad.mit.edu	37	17	15928530	15928530	+	Intron	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC21A	199223	broad.mit.edu	37	3	39167012	39167012	+	Missense_Mutation	SNP	T	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC37	9652	broad.mit.edu	37	5	94865721	94865721	+	Intron	SNP	G	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTK	7272	broad.mit.edu	37	6	80724274	80724274	+	Missense_Mutation	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTK	7272	broad.mit.edu	37	6	80749412	80749412	+	Splice_Site	SNP	G	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179423169	179423169	+	Missense_Mutation	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179504759	179504759	+	Intron	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179542825	179542825	+	Intron	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179553067	179553067	+	Intron	SNP	T	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179553472	179553472	+	Missense_Mutation	SNP	T	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179579124	179579124	+	Missense_Mutation	SNP	T	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBA3D	113457	broad.mit.edu	37	2	132235885	132235885	+	Missense_Mutation	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBA3D	113457	broad.mit.edu	37	2	132238318	132238318	+	Missense_Mutation	SNP	T	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBB4Q	56604	broad.mit.edu	37	4	190904504	190904505	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBAP1	51271	broad.mit.edu	37	9	34249927	34249927	+	Missense_Mutation	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE3C	9690	broad.mit.edu	37	7	157023909	157023909	+	Missense_Mutation	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE3C	9690	broad.mit.edu	37	7	157049761	157049761	+	Intron	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBR4	23352	broad.mit.edu	37	1	19525042	19525042	+	Missense_Mutation	SNP	T	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGGT1	56886	broad.mit.edu	37	2	128855128	128855128	+	Missense_Mutation	SNP	T	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT3A1	133688	broad.mit.edu	37	5	35991280	35991280	+	Missense_Mutation	SNP	C	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT3A1	133688	broad.mit.edu	37	5	35991414	35991414	+	5'UTR	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC5D	137970	broad.mit.edu	37	8	35583900	35583900	+	Missense_Mutation	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH1C	10083	broad.mit.edu	37	11	17522677	17522677	+	Silent	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP20	10868	broad.mit.edu	37	9	132618567	132618567	+	Intron	SNP	C	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP20	10868	broad.mit.edu	37	9	132620196	132620196	+	Intron	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP25	29761	broad.mit.edu	37	21	17202921	17202921	+	Splice_Site	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP32	84669	broad.mit.edu	37	17	58343473	58343473	+	Intron	SNP	T	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP4	7375	broad.mit.edu	37	3	49321528	49321528	+	Frame_Shift_Del	DEL	T	-	-	rs138821848	by1000genomes	TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP54	159195	broad.mit.edu	37	10	75276381	75276381	+	Missense_Mutation	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTRN	7402	broad.mit.edu	37	6	144999682	144999682	+	Missense_Mutation	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTRN	7402	broad.mit.edu	37	6	145051568	145051568	+	Missense_Mutation	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	107047798	107047798	+	IGR	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	4843721	4843721	+	IGR	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	48973496	48973496	+	IGR	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	4944514	4944514	+	IGR	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49455784	49455785	+	IGR	DNP	GG	TT	TT			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49854849	49854849	+	IGR	SNP	T	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55071608	55071608	+	IGR	SNP	G	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55086593	55086593	+	IGR	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	59300034	59300034	+	IGR	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	89501451	89501451	+	IGR	SNP	A	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	106565031	106565031	+	IGR	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	106565812	106565812	+	IGR	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	127828709	127828709	+	IGR	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	34318623	34318623	+	IGR	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	44053825	44053825	+	IGR	SNP	T	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	44054762	44054762	+	IGR	SNP	C	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	84843439	84843439	+	IGR	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	101409350	101409350	+	IGR	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	61211418	61211418	+	IGR	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19476048	19476048	+	IGR	SNP	A	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19500321	19500321	+	IGR	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	59294748	59294748	+	IGR	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20833030	20833030	+	IGR	SNP	T	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32169248	32169248	+	IGR	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32489501	32489501	+	IGR	SNP	T	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33408446	33408446	+	IGR	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33425032	33425032	+	IGR	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33525923	33525923	+	IGR	SNP	A	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33527683	33527683	+	IGR	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33604994	33604994	+	IGR	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33661911	33661911	+	IGR	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33740891	33740891	+	IGR	SNP	A	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34336059	34336059	+	IGR	SNP	T	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	59788772	59788772	+	IGR	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	16746908	16746908	+	IGR	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	16747059	16747059	+	IGR	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	20418574	20418574	+	IGR	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	14392353	14392353	+	IGR	SNP	T	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	39399148	39399148	+	IGR	SNP	C	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	57817497	57817497	+	IGR	SNP	A	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22654384	22654384	+	IGR	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22790831	22790831	+	IGR	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	35874897	35874897	+	IGR	SNP	G	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	9302191	9302191	+	IGR	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	113291078	113291078	+	IGR	SNP	C	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	121245287	121245287	+	IGR	SNP	A	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	13172436	13172436	+	IGR	SNP	G	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149067500	149067500	+	IGR	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	158495246	158495246	+	IGR	SNP	C	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	158495557	158495557	+	IGR	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	199878694	199878694	+	IGR	SNP	T	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	242156916	242156916	+	IGR	DEL	G	-	-			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	11181538	11181538	+	IGR	SNP	T	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	14899688	14899688	+	IGR	SNP	A	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	114416116	114416116	+	IGR	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	131258197	131258197	+	IGR	SNP	G	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132845014	132845014	+	IGR	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	139659516	139659516	+	IGR	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	162363134	162363134	+	IGR	SNP	C	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	177065926	177065926	+	IGR	SNP	C	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	54278527	54278527	+	IGR	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	6636723	6636723	+	IGR	SNP	C	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91873048	91873048	+	IGR	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91873220	91873220	+	IGR	SNP	G	A	A	rs147646837	by1000genomes	TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	122036960	122036960	+	IGR	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	168384418	168384418	+	IGR	SNP	A	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	179182661	179182661	+	IGR	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	191459768	191459768	+	IGR	SNP	T	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	36673377	36673377	+	IGR	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	87680685	87680685	+	IGR	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	99045214	99045214	+	IGR	SNP	C	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	185889343	185889343	+	IGR	SNP	A	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190395289	190395289	+	IGR	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	78033703	78033703	+	IGR	SNP	A	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	105752859	105752859	+	IGR	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	130330504	130330504	+	IGR	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	130330866	130330867	+	IGR	INS	-	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	23303660	23303661	+	IGR	DNP	GG	TT	TT			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	39720064	39720064	+	IGR	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	77081440	77081440	+	IGR	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	106115087	106115087	+	IGR	SNP	T	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	3177259	3177259	+	IGR	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	66547095	66547095	+	IGR	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	80775759	80775760	+	IGR	DNP	CC	AA	AA			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	85139443	85139443	+	IGR	SNP	A	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57929260	57929260	+	IGR	SNP	C	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63033512	63033512	+	IGR	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	6919265	6919265	+	IGR	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	2875935	2875935	+	IGR	SNP	T	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	6675293	6675293	+	IGR	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	7598230	7598230	+	IGR	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	90939922	90939922	+	IGR	SNP	T	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	101034277	101034277	+	IGR	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	106297133	106297133	+	IGR	SNP	G	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	135378496	135378496	+	IGR	DEL	T	-	-			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	145701612	145701612	+	IGR	DEL	G	-	-			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	146353782	146353782	+	IGR	SNP	G	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	19507148	19507148	+	IGR	SNP	G	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	52641711	52641711	+	IGR	SNP	T	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	66594638	66594638	+	IGR	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	89368778	89368778	+	IGR	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	91931490	91931490	+	IGR	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	13501839	13501839	+	IGR	SNP	A	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	13501840	13501840	+	IGR	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VEPH1	79674	broad.mit.edu	37	3	157213148	157213148	+	5'UTR	SNP	G	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VIM	7431	broad.mit.edu	37	10	17279223	17279223	+	Intron	SNP	A	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13A	23230	broad.mit.edu	37	9	79842251	79842251	+	Intron	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS35	55737	broad.mit.edu	37	16	46712818	46712818	+	Intron	SNP	C	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS41	27072	broad.mit.edu	37	7	38766501	38766501	+	Intron	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS8	23355	broad.mit.edu	37	3	184584877	184584877	+	Intron	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WAPAL	23063	broad.mit.edu	37	10	88277334	88277334	+	Missense_Mutation	SNP	T	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR1	9948	broad.mit.edu	37	4	10099383	10099383	+	Silent	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR36	134430	broad.mit.edu	37	5	110428264	110428264	+	Missense_Mutation	SNP	A	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR60	55112	broad.mit.edu	37	7	158718996	158718996	+	Intron	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR66	144406	broad.mit.edu	37	12	122396983	122396983	+	Nonsense_Mutation	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WISP1	8840	broad.mit.edu	37	8	134203380	134203380	+	5'UTR	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WWC2	80014	broad.mit.edu	37	4	184233492	184233492	+	Splice_Site	SNP	A	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XKR4	114786	broad.mit.edu	37	8	56015035	56015035	+	5'UTR	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XKR7	343702	broad.mit.edu	37	20	30584572	30584572	+	Missense_Mutation	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XRN1	54464	broad.mit.edu	37	3	142089540	142089540	+	Intron	SNP	T	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZAN	7455	broad.mit.edu	37	7	100383768	100383768	+	Intron	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3H18	124245	broad.mit.edu	37	16	88694395	88694395	+	Silent	SNP	C	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3H4	23211	broad.mit.edu	37	19	47572319	47572319	+	Intron	SNP	T	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3H7A	29066	broad.mit.edu	37	16	11846653	11846655	+	In_Frame_Del	DEL	GCA	-	-			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCCHC17	51538	broad.mit.edu	37	1	31783128	31783128	+	Intron	SNP	G	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFC3H1	196441	broad.mit.edu	37	12	72004450	72004450	+	Intron	SNP	T	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFP57	346171	broad.mit.edu	37	6	29640292	29640292	+	Missense_Mutation	SNP	G	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFP91	80829	broad.mit.edu	37	11	58379890	58379890	+	Intron	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFYVE26	23503	broad.mit.edu	37	14	68257558	68257558	+	Intron	SNP	A	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFYVE26	23503	broad.mit.edu	37	14	68275994	68275994	+	Missense_Mutation	SNP	C	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIC1	7545	broad.mit.edu	37	3	147131424	147131424	+	3'UTR	SNP	T	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIC3	7547	broad.mit.edu	37	X	136650009	136650009	+	Intron	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIM2	23619	broad.mit.edu	37	19	57286693	57286693	+	Missense_Mutation	SNP	G	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF142	7701	broad.mit.edu	37	2	219507623	219507623	+	Missense_Mutation	SNP	C	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF165	7718	broad.mit.edu	37	6	28056916	28056916	+	Missense_Mutation	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF18	7566	broad.mit.edu	37	17	11881705	11881705	+	Missense_Mutation	SNP	G	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF208	7757	broad.mit.edu	37	19	22154536	22154536	+	Silent	SNP	A	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF217	7764	broad.mit.edu	37	20	52193535	52193535	+	Missense_Mutation	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF235	9310	broad.mit.edu	37	19	44792868	44792868	+	Silent	SNP	A	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF382	84911	broad.mit.edu	37	19	37117262	37117262	+	Missense_Mutation	SNP	A	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF394	84124	broad.mit.edu	37	7	99097796	99097796	+	5'UTR	SNP	T	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF423	23090	broad.mit.edu	37	16	49856567	49856581	+	Splice_Site	DEL	CCTCCCCTGCTCACC	-	-			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF462	58499	broad.mit.edu	37	9	109691376	109691376	+	Missense_Mutation	SNP	A	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF566	84924	broad.mit.edu	37	19	36963700	36963700	+	Intron	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF566	84924	broad.mit.edu	37	19	36963803	36963803	+	Intron	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF573	126231	broad.mit.edu	37	19	38230451	38230451	+	Missense_Mutation	SNP	C	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF595	152687	broad.mit.edu	37	4	53432	53432	+	Intron	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF600	162966	broad.mit.edu	37	19	53282057	53282057	+	Intron	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF623	9831	broad.mit.edu	37	8	144732128	144732138	+	Frame_Shift_Del	DEL	ACTCACATAGG	-	-	rs143378903	byFrequency	TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF624	57547	broad.mit.edu	37	17	16525829	16525829	+	Missense_Mutation	SNP	T	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF638	27332	broad.mit.edu	37	2	71590292	71590292	+	Silent	SNP	T	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF8	7554	broad.mit.edu	37	19	58806789	58806789	+	Missense_Mutation	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZP4	57829	broad.mit.edu	37	1	238048522	238048522	+	Silent	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZYG11B	79699	broad.mit.edu	37	1	53238117	53238117	+	Intron	SNP	G	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	79540521	79540521	+	5'Flank	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55064961	55064961	+	RNA	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22386725	22386725	+	Intron	SNP	A	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22459088	22459088	+	Intron	SNP	T	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22994716	22994716	+	Intron	SNP	T	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	102316172	102316172	+	5'Flank	SNP	A	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	22440454	22440454	+	Silent	SNP	A	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	28513141	28513141	+	Intron	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32077156	32077156	+	5'Flank	SNP	C	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	25758281	25758281	+	RNA	SNP	G	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	78293272	78293272	+	Missense_Mutation	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	19862086	19862086	+	5'Flank	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	50005782	50005782	+	5'Flank	SNP	A	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89247082	89247082	+	RNA	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89266353	89266353	+	Intron	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89976582	89976582	+	Intron	SNP	C	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90108418	90108418	+	Intron	SNP	A	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91679034	91679034	+	5'Flank	SNP	G	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	126915923	126915923	+	Missense_Mutation	SNP	T	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	88814949	88814949	+	Missense_Mutation	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	28927321	28927321	+	RNA	SNP	T	C	C			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142013344	142013344	+	Intron	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142161992	142161992	+	Intron	SNP	G	A	A			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	125154618	125154618	+	Intron	SNP	C	G	G			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
