Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
AATK	9625	broad.mit.edu	37	17	79093923	79093923	+	Intron	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA2	20	broad.mit.edu	37	9	139913597	139913597	+	Intron	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA4	24	broad.mit.edu	37	1	94508894	94508894	+	Nonsense_Mutation	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC11	85320	broad.mit.edu	37	16	48201504	48201504	+	Missense_Mutation	SNP	A	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC5	10057	broad.mit.edu	37	3	183639187	183639187	+	Silent	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABL1	25	broad.mit.edu	37	9	133750268	133750268	+	Silent	SNP	C	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACAN	176	broad.mit.edu	37	15	89399981	89399981	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACOT12	134526	broad.mit.edu	37	5	80638479	80638479	+	Intron	SNP	G	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACOT9	23597	broad.mit.edu	37	X	23751337	23751337	+	Intron	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACOX2	8309	broad.mit.edu	37	3	58508312	58508312	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSM2A	123876	broad.mit.edu	37	16	20494253	20494253	+	Intron	SNP	C	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTN2	88	broad.mit.edu	37	1	236889200	236889200	+	Intron	SNP	C	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM19	8728	broad.mit.edu	37	5	156916250	156916250	+	Intron	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM21P1	145241	broad.mit.edu	37	14	70714518	70714518	+	5'UTR	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM32	203102	broad.mit.edu	37	8	39112006	39112006	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106744255	106744255	+	Intron	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM7	8756	broad.mit.edu	37	8	24324370	24324370	+	Nonsense_Mutation	SNP	G	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS18	170692	broad.mit.edu	37	16	77465343	77465343	+	Missense_Mutation	SNP	G	A	A	rs145596475		TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS6	11174	broad.mit.edu	37	5	64569327	64569327	+	Intron	SNP	T	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS6	11174	broad.mit.edu	37	5	64747409	64747409	+	Silent	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY2	108	broad.mit.edu	37	5	7707764	7707764	+	Intron	SNP	T	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADD2	119	broad.mit.edu	37	2	70933523	70933523	+	Silent	SNP	G	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADIPOR1	51094	broad.mit.edu	37	1	202920103	202920103	+	Silent	SNP	G	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADORA3	140	broad.mit.edu	37	1	112033162	112033162	+	Intron	SNP	C	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFP	174	broad.mit.edu	37	4	74308075	74308075	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGAP3	116988	broad.mit.edu	37	7	150817229	150817229	+	Silent	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGAP5	729092	broad.mit.edu	37	10	75480190	75480190	+	Intron	SNP	C	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGXT2	64902	broad.mit.edu	37	5	35010148	35010148	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHCTF1	25909	broad.mit.edu	37	1	247068858	247068858	+	Missense_Mutation	SNP	T	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH3A2	224	broad.mit.edu	37	17	19568163	19568163	+	Intron	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMPD2	271	broad.mit.edu	37	1	110172893	110172893	+	Silent	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOBEC4	403314	broad.mit.edu	37	1	183616705	183616705	+	3'UTR	SNP	C	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQP1	358	broad.mit.edu	37	7	30963079	30963079	+	Silent	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARG2	384	broad.mit.edu	37	14	68113759	68113759	+	Intron	SNP	G	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF17	9828	broad.mit.edu	37	11	73075516	73075516	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF37	389337	broad.mit.edu	37	5	148980854	148980854	+	Intron	SNP	G	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF6	9459	broad.mit.edu	37	X	135758848	135758848	+	Missense_Mutation	SNP	T	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARMC7	79637	broad.mit.edu	37	17	73125037	73125037	+	Silent	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARMC7	79637	broad.mit.edu	37	17	73125236	73125236	+	3'UTR	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARSJ	79642	broad.mit.edu	37	4	114824400	114824400	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AR	367	broad.mit.edu	37	X	66863122	66863122	+	Silent	SNP	T	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	176853571	176853571	+	Nonsense_Mutation	SNP	C	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASXL3	80816	broad.mit.edu	37	18	31323324	31323324	+	Missense_Mutation	SNP	A	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATN1	1822	broad.mit.edu	37	12	7047629	7047629	+	Intron	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP10A	57194	broad.mit.edu	37	15	25962125	25962125	+	Intron	SNP	T	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP10B	23120	broad.mit.edu	37	5	160047786	160047786	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP11C	286410	broad.mit.edu	37	X	138857035	138857035	+	Missense_Mutation	SNP	T	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2B1	490	broad.mit.edu	37	12	89992965	89992965	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP5J2	9551	broad.mit.edu	37	7	99055823	99055823	+	3'UTR	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP6V0D1	9114	broad.mit.edu	37	16	67514999	67514999	+	5'UTR	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP6V0D1	9114	broad.mit.edu	37	16	67515001	67515001	+	5'UTR	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP8A1	10396	broad.mit.edu	37	4	42487455	42487455	+	Intron	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP8A1	10396	broad.mit.edu	37	4	42551163	42551163	+	Intron	SNP	C	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP8A2	51761	broad.mit.edu	37	13	26043143	26043143	+	Silent	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP8A2	51761	broad.mit.edu	37	13	26436463	26436463	+	Missense_Mutation	SNP	A	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAG1	573	broad.mit.edu	37	9	33264328	33264328	+	Silent	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAG5	9529	broad.mit.edu	37	14	104026973	104026973	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAI1	575	broad.mit.edu	37	8	143624735	143624735	+	Intron	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BARD1	580	broad.mit.edu	37	2	215646023	215646023	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BBS9	27241	broad.mit.edu	37	7	33427662	33427662	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCMO1	53630	broad.mit.edu	37	16	81324006	81324006	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCR	613	broad.mit.edu	37	22	23631820	23631820	+	Intron	SNP	C	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRCA1	672	broad.mit.edu	37	17	41291037	41291037	+	Intron	SNP	C	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRD1	23774	broad.mit.edu	37	22	50169463	50169463	+	Intron	SNP	A	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRD9	65980	broad.mit.edu	37	5	881276	881276	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRE	9577	broad.mit.edu	37	2	28521117	28521117	+	Intron	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRPF3	27154	broad.mit.edu	37	6	36178346	36178346	+	Intron	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTN3A1	11119	broad.mit.edu	37	6	26409614	26409614	+	Intron	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf16	56673	broad.mit.edu	37	11	8946917	8946917	+	Intron	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf43	145645	broad.mit.edu	37	15	45270711	45270711	+	Missense_Mutation	SNP	A	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C16orf68	79091	broad.mit.edu	37	16	8734958	8734958	+	Intron	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C18orf1	753	broad.mit.edu	37	18	13620998	13620998	+	Intron	SNP	A	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf47	126526	broad.mit.edu	37	19	40832426	40832426	+	Intron	SNP	C	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf62	29086	broad.mit.edu	37	19	17385048	17385048	+	Intron	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf129	80133	broad.mit.edu	37	1	170934337	170934337	+	Missense_Mutation	SNP	A	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf63	57035	broad.mit.edu	37	1	25573111	25573111	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C21orf81	391267	broad.mit.edu	37	21	15343550	15343550	+	Intron	SNP	C	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4BPA	722	broad.mit.edu	37	1	207314681	207314681	+	Intron	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf130	221443	broad.mit.edu	37	6	41036604	41036604	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf168	84553	broad.mit.edu	37	6	99796915	99796915	+	Intron	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf170	221322	broad.mit.edu	37	6	121402010	121402010	+	Silent	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8orf34	116328	broad.mit.edu	37	8	69621318	69621318	+	Intron	SNP	A	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf102	375748	broad.mit.edu	37	9	98660089	98660089	+	Intron	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1C	775	broad.mit.edu	37	12	2716101	2716101	+	Intron	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1I	8911	broad.mit.edu	37	22	39996548	39996548	+	Silent	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACYBP	27101	broad.mit.edu	37	1	174979302	174979302	+	3'UTR	SNP	A	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CARD11	84433	broad.mit.edu	37	7	2946328	2946328	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CARD9	64170	broad.mit.edu	37	9	139265114	139265114	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASP8AP2	9994	broad.mit.edu	37	6	90566859	90566859	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CBFA2T2	9139	broad.mit.edu	37	20	32224562	32224562	+	Intron	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CBR1	873	broad.mit.edu	37	21	37444697	37444697	+	Intron	SNP	G	T	T	rs2835266	byFrequency;by1000genomes	TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC135	84229	broad.mit.edu	37	16	57765098	57765098	+	Silent	SNP	G	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC25	55246	broad.mit.edu	37	8	27598009	27598009	+	Nonsense_Mutation	SNP	C	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC60	160777	broad.mit.edu	37	12	119909847	119909847	+	Silent	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC88C	440193	broad.mit.edu	37	14	91776106	91776106	+	Intron	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC91	55297	broad.mit.edu	37	12	28605347	28605347	+	Intron	SNP	T	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC91	55297	broad.mit.edu	37	12	28605389	28605389	+	Intron	SNP	C	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCNB3	85417	broad.mit.edu	37	X	50053789	50053789	+	Missense_Mutation	SNP	T	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCND1	595	broad.mit.edu	37	11	69458698	69458699	+	Missense_Mutation	DNP	GG	TA	TA			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCND1	595	broad.mit.edu	37	11	69458796	69458796	+	Intron	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCNY	219771	broad.mit.edu	37	10	35819000	35819000	+	Intron	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCT7	10574	broad.mit.edu	37	2	73476906	73476906	+	Intron	SNP	G	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD1A	909	broad.mit.edu	37	1	158225933	158225933	+	Silent	SNP	G	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD1D	912	broad.mit.edu	37	1	158153637	158153637	+	Intron	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD244	51744	broad.mit.edu	37	1	160805878	160805878	+	Intron	SNP	T	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD46	4179	broad.mit.edu	37	1	207925405	207925405	+	5'UTR	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH12	1010	broad.mit.edu	37	5	21883446	21883446	+	Intron	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH19	28513	broad.mit.edu	37	18	64218487	64218487	+	Missense_Mutation	SNP	T	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH6	1004	broad.mit.edu	37	5	31316422	31316422	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH8	1006	broad.mit.edu	37	16	61859003	61859003	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK5RAP2	55755	broad.mit.edu	37	9	123233756	123233756	+	Intron	SNP	A	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK9	1025	broad.mit.edu	37	9	130551617	130551617	+	Missense_Mutation	SNP	A	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELA3A	10136	broad.mit.edu	37	1	22333549	22333549	+	Intron	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELA3B	23436	broad.mit.edu	37	1	22310365	22310365	+	Intron	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELSR3	1951	broad.mit.edu	37	3	48686568	48686568	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELSR3	1951	broad.mit.edu	37	3	48696534	48696534	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPF	1063	broad.mit.edu	37	1	214830338	214830338	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP76	79959	broad.mit.edu	37	18	12695285	12695285	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD6	84181	broad.mit.edu	37	20	40040832	40040832	+	Silent	SNP	C	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD6	84181	broad.mit.edu	37	20	40111898	40111898	+	Intron	SNP	A	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRNB3	1142	broad.mit.edu	37	8	42581254	42581254	+	Intron	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHURC1	91612	broad.mit.edu	37	14	65399021	65399021	+	3'UTR	SNP	T	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CIITA	4261	broad.mit.edu	37	16	10996625	10996625	+	Nonsense_Mutation	SNP	G	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CIT	11113	broad.mit.edu	37	12	120241294	120241294	+	Intron	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCA4	22802	broad.mit.edu	37	1	87031004	87031004	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLTCL1	8218	broad.mit.edu	37	22	19167663	19167663	+	Intron	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGA2	1260	broad.mit.edu	37	X	150911915	150911915	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNPY2	10330	broad.mit.edu	37	12	56708678	56708678	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTLN	54875	broad.mit.edu	37	9	17409351	17409351	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COCH	1690	broad.mit.edu	37	14	31344243	31344243	+	Intron	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COG3	83548	broad.mit.edu	37	13	46039397	46039397	+	Intron	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103444491	103444491	+	Intron	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103462666	103462666	+	Silent	SNP	T	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL16A1	1307	broad.mit.edu	37	1	32167811	32167811	+	5'UTR	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL27A1	85301	broad.mit.edu	37	9	117027438	117027438	+	Intron	SNP	G	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL3A1	1281	broad.mit.edu	37	2	189855103	189855103	+	Intron	SNP	A	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A1	1282	broad.mit.edu	37	13	110855804	110855804	+	Intron	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A4	1286	broad.mit.edu	37	2	227925020	227925020	+	Intron	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A5	1287	broad.mit.edu	37	X	107782953	107782953	+	Intron	SNP	T	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A5	1287	broad.mit.edu	37	X	107840675	107840675	+	Silent	SNP	T	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COPS4	51138	broad.mit.edu	37	4	83977994	83977994	+	Intron	SNP	A	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COPS6	10980	broad.mit.edu	37	7	99687059	99687059	+	Intron	SNP	C	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COPS6	10980	broad.mit.edu	37	7	99687071	99687071	+	Intron	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSF2RA	1438	broad.mit.edu	37	X	1414369	1414369	+	Intron	SNP	C	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34003033	34003033	+	Intron	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113316974	113316974	+	Missense_Mutation	SNP	T	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113347805	113347805	+	Intron	SNP	G	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA3	29119	broad.mit.edu	37	10	68979297	68979297	+	Intron	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTTNBP2	83992	broad.mit.edu	37	7	117431286	117431286	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUBN	8029	broad.mit.edu	37	10	16994356	16994356	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUBN	8029	broad.mit.edu	37	10	17164803	17164803	+	Frame_Shift_Del	DEL	C	-	-			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYLC2	1539	broad.mit.edu	37	9	105767260	105767260	+	Missense_Mutation	SNP	A	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2A7	1549	broad.mit.edu	37	19	41383726	41383726	+	Intron	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DACT1	51339	broad.mit.edu	37	14	59105173	59105173	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAO	1610	broad.mit.edu	37	12	109281448	109281448	+	Intron	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DBX1	120237	broad.mit.edu	37	11	20178576	20178576	+	Intron	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DBX1	120237	broad.mit.edu	37	11	20180949	20180949	+	Intron	SNP	C	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF4L1	285429	broad.mit.edu	37	4	41984969	41984969	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF4L2	138009	broad.mit.edu	37	8	88886265	88886265	+	Translation_Start_Site	SNP	T	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF7	10238	broad.mit.edu	37	17	61627972	61627972	+	5'UTR	SNP	C	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCDC2B	149069	broad.mit.edu	37	1	32675076	32675077	+	Intron	INS	-	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCLK1	9201	broad.mit.edu	37	13	36379850	36379850	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCLRE1C	64421	broad.mit.edu	37	10	14987175	14987175	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDI1	414301	broad.mit.edu	37	11	103908057	103908057	+	Missense_Mutation	SNP	A	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX10	1662	broad.mit.edu	37	11	108788635	108788637	+	In_Frame_Del	DEL	TGA	-	-			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX4	54514	broad.mit.edu	37	5	55056114	55056114	+	Intron	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEFB123	245936	broad.mit.edu	37	20	30028441	30028443	+	5'UTR	DEL	CTT	-	-			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKI	9162	broad.mit.edu	37	7	137282598	137282598	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX35	60625	broad.mit.edu	37	20	37656900	37656900	+	Intron	SNP	C	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIAPH1	1729	broad.mit.edu	37	5	140907993	140907993	+	Intron	SNP	C	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLD	1738	broad.mit.edu	37	7	107556093	107556093	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLGAP2	9228	broad.mit.edu	37	8	1497624	1497624	+	Silent	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLL1	28514	broad.mit.edu	37	6	170598011	170598011	+	Intron	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH7	56171	broad.mit.edu	37	2	196865658	196865658	+	Intron	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH8	1769	broad.mit.edu	37	6	38747797	38747797	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC13	23317	broad.mit.edu	37	3	132220426	132220426	+	Intron	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAL1	83544	broad.mit.edu	37	14	74154042	74154042	+	Silent	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNMT1	1786	broad.mit.edu	37	19	10287991	10287991	+	Silent	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNTT	1791	broad.mit.edu	37	10	98078338	98078338	+	Intron	SNP	G	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169111353	169111353	+	Missense_Mutation	SNP	A	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169508967	169508967	+	Silent	SNP	C	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK7	85440	broad.mit.edu	37	1	63113915	63113915	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOK2	9046	broad.mit.edu	37	8	21768239	21768240	+	Nonsense_Mutation	DNP	CC	TA	TA			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPEP1	1800	broad.mit.edu	37	16	89703660	89703660	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPH1	1801	broad.mit.edu	37	17	1936833	1936833	+	Silent	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPYD	1806	broad.mit.edu	37	1	98058679	98058679	+	Intron	SNP	A	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPYSL3	1809	broad.mit.edu	37	5	146785353	146785353	+	Intron	SNP	C	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DRAM1	55332	broad.mit.edu	37	12	102302092	102302092	+	Silent	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSC2	1824	broad.mit.edu	37	18	28660165	28660165	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUSP19	142679	broad.mit.edu	37	2	183943759	183943759	+	Missense_Mutation	SNP	A	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUSP27	92235	broad.mit.edu	37	1	167097297	167097297	+	Missense_Mutation	SNP	A	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNC2H1	79659	broad.mit.edu	37	11	103182782	103182782	+	Intron	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYTN	391475	broad.mit.edu	37	2	207575368	207575368	+	Intron	SNP	T	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYX1C1	161582	broad.mit.edu	37	15	55790480	55790480	+	Silent	SNP	C	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EBF3	253738	broad.mit.edu	37	10	131671764	131671764	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ECHDC1	55862	broad.mit.edu	37	6	127636021	127636021	+	Missense_Mutation	SNP	G	A	A	rs146146402		TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EEF2K	29904	broad.mit.edu	37	16	22268436	22268436	+	Intron	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EEFSEC	60678	broad.mit.edu	37	3	128060266	128060266	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFCAB6	64800	broad.mit.edu	37	22	44198656	44198656	+	Intron	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF2B3	8891	broad.mit.edu	37	1	45347297	45347297	+	Silent	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF3E	3646	broad.mit.edu	37	8	109215617	109215617	+	Intron	SNP	A	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF3F	8665	broad.mit.edu	37	11	8016481	8016481	+	Intron	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELL	8178	broad.mit.edu	37	19	18632882	18632882	+	5'UTR	SNP	C	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMCN	51705	broad.mit.edu	37	4	101331503	101331503	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENO3	2027	broad.mit.edu	37	17	4859788	4859788	+	Intron	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENOX1	55068	broad.mit.edu	37	13	43788178	43788178	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENOX1	55068	broad.mit.edu	37	13	43872695	43872695	+	Intron	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENTPD6	955	broad.mit.edu	37	20	25205984	25205984	+	Intron	SNP	C	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPB41L4B	54566	broad.mit.edu	37	9	112029654	112029654	+	Intron	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHB3	2049	broad.mit.edu	37	3	184297342	184297342	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHX3	79852	broad.mit.edu	37	19	15338931	15338931	+	Intron	SNP	G	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPN2	22905	broad.mit.edu	37	17	19216480	19216480	+	Frame_Shift_Del	DEL	C	-	-			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERBB4	2066	broad.mit.edu	37	2	212484049	212484049	+	Intron	SNP	T	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERBB4	2066	broad.mit.edu	37	2	212543997	212543997	+	Intron	SNP	T	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESPN	83715	broad.mit.edu	37	1	6488379	6488379	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESYT3	83850	broad.mit.edu	37	3	138179623	138179623	+	Intron	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOC5	10640	broad.mit.edu	37	14	57698506	57698506	+	Intron	SNP	T	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOSC4	54512	broad.mit.edu	37	8	145134858	145134858	+	Silent	SNP	C	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYA3	2140	broad.mit.edu	37	1	28384528	28384528	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM102A	399665	broad.mit.edu	37	9	130705590	130705590	+	Intron	SNP	T	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135A	57579	broad.mit.edu	37	6	71238227	71238227	+	Intron	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135A	57579	broad.mit.edu	37	6	71248050	71248050	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM188B	84182	broad.mit.edu	37	7	30825111	30825111	+	Intron	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM188B	84182	broad.mit.edu	37	7	30825162	30825162	+	Intron	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM38B	63895	broad.mit.edu	37	18	10691237	10691237	+	Silent	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM3D	131177	broad.mit.edu	37	3	58639320	58639320	+	Intron	SNP	C	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM5C	339479	broad.mit.edu	37	1	190424018	190424018	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM70B	348013	broad.mit.edu	37	13	114514649	114514649	+	Intron	SNP	C	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM71D	161142	broad.mit.edu	37	14	67666105	67666105	+	Intron	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM73A	374986	broad.mit.edu	37	1	78313285	78313285	+	Intron	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FANCF	2188	broad.mit.edu	37	11	22646211	22646211	+	3'UTR	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT2	2196	broad.mit.edu	37	5	150925373	150925373	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXL18	80028	broad.mit.edu	37	7	5540616	5540616	+	Silent	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCER1A	2205	broad.mit.edu	37	1	159277622	159277622	+	Nonsense_Mutation	SNP	C	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCGR3B	2215	broad.mit.edu	37	1	161595804	161595804	+	Intron	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FHIT	2272	broad.mit.edu	37	3	59737985	59737985	+	Silent	SNP	T	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FHOD1	29109	broad.mit.edu	37	16	67263491	67263491	+	3'UTR	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FKSG73	440888	broad.mit.edu	37	2	92128998	92128998	+	5'Flank	SNP	C	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ10661	286042	broad.mit.edu	37	8	8095839	8095839	+	RNA	SNP	C	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN2	56776	broad.mit.edu	37	1	240306327	240306327	+	Intron	SNP	A	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN2	56776	broad.mit.edu	37	1	240497281	240497281	+	Intron	SNP	A	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FNDC3A	22862	broad.mit.edu	37	13	49752734	49752734	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSCN3	29999	broad.mit.edu	37	7	127235473	127235473	+	Frame_Shift_Del	DEL	G	-	-			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FUCA1	2517	broad.mit.edu	37	1	24194554	24194554	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FZD7	8324	broad.mit.edu	37	2	202899457	202899457	+	Silent	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABBR2	9568	broad.mit.edu	37	9	101061497	101061497	+	Intron	SNP	C	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRG2	2566	broad.mit.edu	37	5	161580236	161580236	+	Missense_Mutation	SNP	A	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRR3	200959	broad.mit.edu	37	3	97711637	97711637	+	Intron	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GATS	352954	broad.mit.edu	37	7	99799776	99799776	+	3'UTR	SNP	C	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCNT4	51301	broad.mit.edu	37	5	74325767	74325767	+	Silent	SNP	T	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GDI2	2665	broad.mit.edu	37	10	5808296	5808296	+	Intron	SNP	C	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFPT2	9945	broad.mit.edu	37	5	179751151	179751151	+	Intron	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFRAL	389400	broad.mit.edu	37	6	55264023	55264023	+	Missense_Mutation	SNP	G	C	C	rs137898068		TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GJD2	57369	broad.mit.edu	37	15	35044898	35044898	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GK	2710	broad.mit.edu	37	X	30739036	30739036	+	Silent	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLI3	2737	broad.mit.edu	37	7	42153126	42153126	+	Intron	SNP	A	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLP2R	9340	broad.mit.edu	37	17	9792772	9792772	+	Missense_Mutation	SNP	T	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLTSCR2	29997	broad.mit.edu	37	19	48255844	48255844	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLYR1	84656	broad.mit.edu	37	16	4861378	4861378	+	Intron	SNP	A	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGA2B	55592	broad.mit.edu	37	12	100551822	100551822	+	Nonsense_Mutation	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGA3	2802	broad.mit.edu	37	12	133353279	133353279	+	Silent	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOSR2	9570	broad.mit.edu	37	17	45095927	45095927	+	Intron	SNP	G	T	T	rs115948616	by1000genomes	TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOSR2	9570	broad.mit.edu	37	17	45097003	45097003	+	Intron	SNP	T	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPC3	2719	broad.mit.edu	37	X	133087112	133087112	+	Missense_Mutation	SNP	T	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPHN	10243	broad.mit.edu	37	14	67147795	67147795	+	Intron	DEL	T	-	-			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPHN	10243	broad.mit.edu	37	14	67490429	67490429	+	Intron	SNP	A	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPN2	54707	broad.mit.edu	37	1	27215438	27215438	+	Intron	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIA1	2890	broad.mit.edu	37	5	152870470	152870470	+	Missense_Mutation	SNP	T	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRK1	6011	broad.mit.edu	37	13	114322111	114322111	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRLF1	2909	broad.mit.edu	37	19	47492798	47492798	+	Intron	SNP	C	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM1	2911	broad.mit.edu	37	6	146720735	146720735	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCY1A2	2977	broad.mit.edu	37	11	106558341	106558341	+	Silent	SNP	A	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUK1	2987	broad.mit.edu	37	1	228336333	228336333	+	Intron	SNP	G	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GYPC	2995	broad.mit.edu	37	2	127451417	127451417	+	Intron	SNP	A	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HARS2	23438	broad.mit.edu	37	5	140073516	140073516	+	Intron	SNP	C	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR2	54919	broad.mit.edu	37	7	808794	808794	+	Intron	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECW2	57520	broad.mit.edu	37	2	197194259	197194259	+	Intron	SNP	A	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC4	26091	broad.mit.edu	37	10	69683003	69683003	+	Intron	SNP	C	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIC2	23119	broad.mit.edu	37	22	21800810	21800810	+	Silent	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXB3	3213	broad.mit.edu	37	17	46629586	46629586	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXD3	3232	broad.mit.edu	37	2	177034065	177034065	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSD3B2	3284	broad.mit.edu	37	1	119964263	119964263	+	Intron	SNP	C	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPH1	10808	broad.mit.edu	37	13	31728953	31728953	+	Intron	SNP	T	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFI16	3428	broad.mit.edu	37	1	159019381	159019381	+	Missense_Mutation	SNP	T	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFIH1	64135	broad.mit.edu	37	2	163138094	163138094	+	Intron	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFT81	28981	broad.mit.edu	37	12	110618328	110618328	+	Silent	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFT88	8100	broad.mit.edu	37	13	21265279	21265279	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGFL2	147920	broad.mit.edu	37	19	46663876	46663876	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGFL4	444882	broad.mit.edu	37	19	46543912	46543912	+	Intron	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF9	57549	broad.mit.edu	37	1	159901558	159901558	+	Intron	SNP	T	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IKZF1	10320	broad.mit.edu	37	7	50455159	50455159	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IK	3550	broad.mit.edu	37	5	140041719	140041719	+	Intron	SNP	C	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INO80	54617	broad.mit.edu	37	15	41373176	41373176	+	Intron	SNP	C	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IP6K2	51447	broad.mit.edu	37	3	48725789	48725789	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQCG	84223	broad.mit.edu	37	3	197616625	197616625	+	Intron	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRGC	56269	broad.mit.edu	37	19	44223520	44223520	+	Silent	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGB2	3689	broad.mit.edu	37	21	46308570	46308570	+	Intron	SNP	C	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITPR3	3710	broad.mit.edu	37	6	33644915	33644916	+	Intron	INS	-	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITSN1	6453	broad.mit.edu	37	21	35206578	35206579	+	Intron	INS	-	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KALRN	8997	broad.mit.edu	37	3	124393476	124393476	+	Intron	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNMA1	3778	broad.mit.edu	37	10	78872248	78872248	+	Intron	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNQ5	56479	broad.mit.edu	37	6	73332391	73332391	+	Intron	SNP	C	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNT2	343450	broad.mit.edu	37	1	196309587	196309587	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCTD8	386617	broad.mit.edu	37	4	44449818	44449818	+	Silent	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM5C	8242	broad.mit.edu	37	X	53223699	53223699	+	Silent	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KEAP1	9817	broad.mit.edu	37	19	10602775	10602775	+	Missense_Mutation	SNP	A	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KHDRBS3	10656	broad.mit.edu	37	8	136554916	136554916	+	Missense_Mutation	SNP	T	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KHDRBS3	10656	broad.mit.edu	37	8	136638123	136638123	+	Intron	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0125	9834	broad.mit.edu	37	14	106357636	106357636	+	Intron	DEL	G	-	-			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0753	9851	broad.mit.edu	37	17	6483287	6483287	+	Intron	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1217	56243	broad.mit.edu	37	10	24762918	24762918	+	Silent	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1217	56243	broad.mit.edu	37	10	24762928	24762928	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1267	284058	broad.mit.edu	37	17	44117133	44117133	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1715	80856	broad.mit.edu	37	2	176794750	176794750	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF13B	23303	broad.mit.edu	37	8	28976370	28976370	+	Intron	SNP	T	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF21B	23046	broad.mit.edu	37	1	200968473	200968473	+	Intron	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF2B	84643	broad.mit.edu	37	17	51901606	51901606	+	Silent	SNP	G	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF3C	3797	broad.mit.edu	37	2	26174626	26174626	+	Intron	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLF6	1316	broad.mit.edu	37	10	3822298	3822298	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL7	55975	broad.mit.edu	37	7	23164582	23164582	+	Intron	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KNDC1	85442	broad.mit.edu	37	10	135038376	135038376	+	Missense_Mutation	SNP	G	A	A	rs141333921		TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP10-3	386682	broad.mit.edu	37	21	45978613	45978613	+	5'UTR	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP10-6	386674	broad.mit.edu	37	21	46011473	46011473	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP19-6	337973	broad.mit.edu	37	21	31914243	31914243	+	5'Flank	SNP	A	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LACTB2	51110	broad.mit.edu	37	8	71556453	71556453	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA3	3909	broad.mit.edu	37	18	21526203	21526203	+	Silent	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LARP4B	23185	broad.mit.edu	37	10	875438	875438	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LDLRAD3	143458	broad.mit.edu	37	11	36103258	36103258	+	Silent	SNP	T	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LEFTY2	7044	broad.mit.edu	37	1	226125264	226125264	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGALS9	3965	broad.mit.edu	37	17	25976035	25976035	+	3'UTR	SNP	G	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGTN	1939	broad.mit.edu	37	1	206769279	206769279	+	Intron	SNP	A	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHFPL5	222662	broad.mit.edu	37	6	35773660	35773660	+	Silent	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB1	10859	broad.mit.edu	37	19	55147118	55147118	+	Intron	SNP	G	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIN7C	55327	broad.mit.edu	37	11	27528219	27528219	+	Intron	SNP	C	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIPC	3990	broad.mit.edu	37	15	58834725	58834725	+	Intron	SNP	T	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMF1	64788	broad.mit.edu	37	16	921433	921433	+	Intron	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC440040	440040	broad.mit.edu	37	11	49597836	49597836	+	5'UTR	SNP	A	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC646214	646214	broad.mit.edu	37	15	21936572	21936572	+	RNA	SNP	C	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC654342	654342	broad.mit.edu	37	2	91809313	91809313	+	Intron	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC728024	728024	broad.mit.edu	37	8	37605166	37605166	+	Silent	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	22681798	22681798	+	Intron	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPAL2	80350	broad.mit.edu	37	6	160907031	160907031	+	Intron	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN3	23284	broad.mit.edu	37	4	62599069	62599069	+	Missense_Mutation	SNP	A	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141081555	141081555	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141773491	141773491	+	Intron	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP8	7804	broad.mit.edu	37	1	53792512	53792512	+	Intron	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC3B	116135	broad.mit.edu	37	3	26751187	26751187	+	Frame_Shift_Del	DEL	A	-	-			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC40	55631	broad.mit.edu	37	1	70611554	70611554	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC41	10489	broad.mit.edu	37	1	46745979	46745979	+	Intron	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRK1	79705	broad.mit.edu	37	15	101593183	101593183	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRN1	57633	broad.mit.edu	37	3	3888070	3888070	+	Missense_Mutation	SNP	A	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LUZP1	7798	broad.mit.edu	37	1	23418835	23418835	+	Silent	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LY75	4065	broad.mit.edu	37	2	160661621	160661621	+	Silent	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MACF1	23499	broad.mit.edu	37	1	39751235	39751235	+	Intron	DEL	A	-	-			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGT1	84061	broad.mit.edu	37	X	77130816	77130816	+	Intron	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MALAT1	378938	broad.mit.edu	37	11	65273372	65273372	+	RNA	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MALAT1	378938	broad.mit.edu	37	11	65273513	65273513	+	RNA	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K5	4217	broad.mit.edu	37	6	136923207	136923207	+	Intron	SNP	C	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH4	57574	broad.mit.edu	37	2	217234653	217234653	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAVS	57506	broad.mit.edu	37	20	3838387	3838387	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCAM	4162	broad.mit.edu	37	11	119183672	119183672	+	Intron	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCM3AP	8888	broad.mit.edu	37	21	47663461	47663461	+	Silent	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCTP2	55784	broad.mit.edu	37	15	94858848	94858848	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDC1	9656	broad.mit.edu	37	6	30672360	30672360	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEGF11	84465	broad.mit.edu	37	15	66190517	66190517	+	Intron	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEIS2	4212	broad.mit.edu	37	15	37187188	37187188	+	Intron	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR548I2	100302277	broad.mit.edu	37	4	9557945	9557945	+	5'Flank	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR891B	100126304	broad.mit.edu	37	X	145082684	145082684	+	5'Flank	SNP	A	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MITF	4286	broad.mit.edu	37	3	69987181	69987181	+	Missense_Mutation	SNP	A	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL2	8085	broad.mit.edu	37	12	49415782	49415782	+	Intron	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL2	8085	broad.mit.edu	37	12	49422665	49422665	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLLT11	10962	broad.mit.edu	37	1	151040066	151040066	+	3'UTR	SNP	C	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MNDA	4332	broad.mit.edu	37	1	158815572	158815572	+	Silent	SNP	T	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOCS1	4337	broad.mit.edu	37	6	39881218	39881218	+	Intron	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRM1	79922	broad.mit.edu	37	17	34958970	34958970	+	Intron	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPL21	219927	broad.mit.edu	37	11	68667950	68667950	+	Intron	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPL37	51253	broad.mit.edu	37	1	54666245	54666246	+	Frame_Shift_Ins	INS	-	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A4A	51338	broad.mit.edu	37	11	60073747	60073747	+	Intron	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTMR11	10903	broad.mit.edu	37	1	149901597	149901597	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTR	4548	broad.mit.edu	37	1	237057846	237057846	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC17	140453	broad.mit.edu	37	7	100680521	100680521	+	Nonsense_Mutation	SNP	G	T	T	rs73712043	byFrequency;by1000genomes	TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC2	4583	broad.mit.edu	37	11	1096391	1096391	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC7	4589	broad.mit.edu	37	4	71347020	71347020	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MX2	4600	broad.mit.edu	37	21	42748999	42748999	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYCL1	4610	broad.mit.edu	37	1	40363105	40363105	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYEF2	50804	broad.mit.edu	37	15	48446077	48446078	+	Missense_Mutation	DNP	GC	AA	AA			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH15	22989	broad.mit.edu	37	3	108117735	108117735	+	Intron	SNP	C	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH3	4621	broad.mit.edu	37	17	10558037	10558037	+	Intron	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH4	4622	broad.mit.edu	37	17	10361078	10361078	+	Intron	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOZ1	58529	broad.mit.edu	37	10	75391780	75391780	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYSM1	114803	broad.mit.edu	37	1	59139252	59139252	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAALAD2	10003	broad.mit.edu	37	11	89896313	89896313	+	Intron	SNP	C	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NALCN	259232	broad.mit.edu	37	13	101734027	101734030	+	Intron	DEL	AGAG	-	-			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NALCN	259232	broad.mit.edu	37	13	101760020	101760020	+	Intron	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NALCN	259232	broad.mit.edu	37	13	101910917	101910917	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV2	89797	broad.mit.edu	37	11	19970312	19970312	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	145302756	145302756	+	Silent	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	145312046	145312046	+	Intron	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF1	55672	broad.mit.edu	37	1	16891356	16891356	+	Intron	SNP	C	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCBP1	4686	broad.mit.edu	37	9	100426740	100426740	+	Intron	SNP	T	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCOR2	9612	broad.mit.edu	37	12	124884916	124884916	+	Intron	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDRG3	57446	broad.mit.edu	37	20	35312903	35312903	+	Intron	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDST1	3340	broad.mit.edu	37	5	149915212	149915212	+	Intron	SNP	A	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDST3	9348	broad.mit.edu	37	4	118975516	118975516	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDST3	9348	broad.mit.edu	37	4	119114864	119114864	+	Intron	SNP	T	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEK10	152110	broad.mit.edu	37	3	27152624	27152624	+	3'UTR	SNP	A	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEK10	152110	broad.mit.edu	37	3	27152782	27152782	+	Missense_Mutation	SNP	T	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEK10	152110	broad.mit.edu	37	3	27203854	27203854	+	3'UTR	SNP	A	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEK10	152110	broad.mit.edu	37	3	27204078	27204078	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEK5	341676	broad.mit.edu	37	13	52701619	52701619	+	5'UTR	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NF1P1	440225	broad.mit.edu	37	15	22140517	22140517	+	Intron	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFIC	4782	broad.mit.edu	37	19	3434378	3434382	+	Frame_Shift_Del	DEL	GCCCA	-	-			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NHEDC1	150159	broad.mit.edu	37	4	103806449	103806449	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKTR	4820	broad.mit.edu	37	3	42681380	42681380	+	Intron	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLGN4X	57502	broad.mit.edu	37	X	5821683	5821683	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRC5	84166	broad.mit.edu	37	16	57047850	57047850	+	Intron	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NME1-NME2	654364	broad.mit.edu	37	17	49245626	49245626	+	Silent	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOTCH2	4853	broad.mit.edu	37	1	120612013	120612013	+	Missense_Mutation	SNP	G	A	A	rs150390977	by1000genomes	TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NR2F1	7025	broad.mit.edu	37	5	92929473	92929473	+	Silent	SNP	C	T	T	rs138827038	byFrequency	TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NR5A2	2494	broad.mit.edu	37	1	200080462	200080463	+	Intron	INS	-	T	T	rs143209337	by1000genomes	TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRD1	4898	broad.mit.edu	37	1	52260342	52260342	+	Intron	SNP	C	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN1	9378	broad.mit.edu	37	2	50464087	50464087	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN3	9369	broad.mit.edu	37	14	79175708	79175708	+	Missense_Mutation	SNP	A	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NSMAF	8439	broad.mit.edu	37	8	59512531	59512531	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUMA1	4926	broad.mit.edu	37	11	71727042	71727042	+	Silent	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP133	55746	broad.mit.edu	37	1	229600711	229600711	+	Intron	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OAS3	4940	broad.mit.edu	37	12	113386888	113386888	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OC90	729330	broad.mit.edu	37	8	133062114	133062114	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ2	57451	broad.mit.edu	37	5	167420063	167420063	+	Silent	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OLIG3	167826	broad.mit.edu	37	6	137815158	137815158	+	Silent	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10R2	343406	broad.mit.edu	37	1	158450025	158450025	+	Nonsense_Mutation	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1C1	26188	broad.mit.edu	37	1	247921160	247921160	+	Silent	SNP	A	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1G1	8390	broad.mit.edu	37	17	3030291	3030291	+	Silent	SNP	C	G	G	rs61736116	byFrequency;by1000genomes	TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2D2	120776	broad.mit.edu	37	11	6913260	6913260	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2M4	26245	broad.mit.edu	37	1	248402282	248402282	+	Missense_Mutation	SNP	T	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T10	127069	broad.mit.edu	37	1	248756476	248756476	+	Silent	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T2	401992	broad.mit.edu	37	1	248616758	248616758	+	Silent	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T3	343173	broad.mit.edu	37	1	248636563	248636563	+	5'Flank	SNP	C	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51A4	401666	broad.mit.edu	37	11	4967632	4967632	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52R1	119695	broad.mit.edu	37	11	4825130	4825130	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5C1	392391	broad.mit.edu	37	9	125551304	125551304	+	Silent	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5I1	10798	broad.mit.edu	37	11	55703807	55703807	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5L2	26338	broad.mit.edu	37	11	55594902	55594902	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5M3	219482	broad.mit.edu	37	11	56237502	56237502	+	Missense_Mutation	SNP	T	G	G	rs148100298	by1000genomes	TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5T1	390155	broad.mit.edu	37	11	56043714	56043714	+	Silent	SNP	T	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8J3	81168	broad.mit.edu	37	11	55904846	55904846	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBPL8	114882	broad.mit.edu	37	12	76763494	76763494	+	Missense_Mutation	SNP	T	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OVCH1	341350	broad.mit.edu	37	12	29617518	29617518	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P4HA3	283208	broad.mit.edu	37	11	74015301	74015301	+	Intron	SNP	C	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PACS2	23241	broad.mit.edu	37	14	105814832	105814840	+	In_Frame_Del	DEL	TGTGCAGCC	-	-			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PACSIN1	29993	broad.mit.edu	37	6	34496627	34496627	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAMR1	25891	broad.mit.edu	37	11	35453913	35453913	+	Silent	SNP	A	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPD4	167153	broad.mit.edu	37	5	78981148	78981148	+	3'UTR	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA	5069	broad.mit.edu	37	9	118949434	118949434	+	Silent	SNP	G	A	A	rs138083509		TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARD3B	117583	broad.mit.edu	37	2	205969185	205969185	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARD3B	117583	broad.mit.edu	37	2	206036935	206036935	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11X	27328	broad.mit.edu	37	X	91675613	91675613	+	Intron	SNP	G	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA11	56138	broad.mit.edu	37	5	140249821	140249821	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB17	54661	broad.mit.edu	37	5	140537598	140537598	+	3'UTR	SNP	C	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA2	56113	broad.mit.edu	37	5	140719744	140719744	+	Nonsense_Mutation	SNP	C	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCNX	22990	broad.mit.edu	37	14	71476483	71476483	+	Intron	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE1C	5137	broad.mit.edu	37	7	31855500	31855500	+	Intron	SNP	C	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZD7	79955	broad.mit.edu	37	10	102783592	102783592	+	Intron	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PES1	23481	broad.mit.edu	37	22	30975751	30975751	+	Silent	SNP	C	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF12	57649	broad.mit.edu	37	17	27248873	27248873	+	Intron	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF14	9678	broad.mit.edu	37	7	11068332	11068332	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHPT1	29085	broad.mit.edu	37	9	139744639	139744639	+	Intron	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PI4KA	5297	broad.mit.edu	37	22	21068845	21068845	+	Intron	SNP	C	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIAS2	9063	broad.mit.edu	37	18	44435122	44435122	+	Intron	SNP	C	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD1L2	114780	broad.mit.edu	37	16	81157238	81157238	+	Intron	SNP	C	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1	5314	broad.mit.edu	37	6	51656001	51656001	+	Intron	SNP	C	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKN3	29941	broad.mit.edu	37	9	131481908	131481908	+	Intron	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2G4D	283748	broad.mit.edu	37	15	42378515	42378515	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2G4F	255189	broad.mit.edu	37	15	42437819	42437819	+	Silent	SNP	C	A	A	rs115928111	byFrequency	TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2G6	8398	broad.mit.edu	37	22	38538946	38538946	+	Intron	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2R1	22925	broad.mit.edu	37	2	160884750	160884750	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHA6	22874	broad.mit.edu	37	1	204199511	204199511	+	Intron	SNP	C	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA3	55558	broad.mit.edu	37	X	153699711	153699711	+	Intron	SNP	G	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PMFBP1	83449	broad.mit.edu	37	16	72162829	72162829	+	Intron	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNMAL1	55228	broad.mit.edu	37	19	46974056	46974056	+	Silent	SNP	C	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLDIP2	26073	broad.mit.edu	37	17	26680307	26680307	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLG	5428	broad.mit.edu	37	15	89862318	89862318	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLG	5428	broad.mit.edu	37	15	89862396	89862396	+	Intron	SNP	C	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLH	5429	broad.mit.edu	37	6	43582054	43582054	+	Silent	SNP	C	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLQ	10721	broad.mit.edu	37	3	121230866	121230866	+	Silent	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR3C	10623	broad.mit.edu	37	1	145598609	145598609	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POM121L12	285877	broad.mit.edu	37	7	53103781	53103781	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEE	445582	broad.mit.edu	37	2	131976395	131976395	+	Silent	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEF	728378	broad.mit.edu	37	2	130877669	130877669	+	Silent	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPARGC1B	133522	broad.mit.edu	37	5	149214257	149214257	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPARG	5468	broad.mit.edu	37	3	12393098	12393098	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPFIA2	8499	broad.mit.edu	37	12	81678087	81678087	+	Intron	SNP	T	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP3CC	5533	broad.mit.edu	37	8	22368701	22368701	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRAMEF11	440560	broad.mit.edu	37	1	12887729	12887729	+	Intron	SNP	C	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRAMEF17	391004	broad.mit.edu	37	1	13718412	13718412	+	Missense_Mutation	SNP	A	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRB4	5545	broad.mit.edu	37	12	11201049	11201049	+	Intron	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM2	7799	broad.mit.edu	37	1	14108929	14108929	+	Missense_Mutation	SNP	C	T	T	rs144820187	by1000genomes	TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKAA2	5563	broad.mit.edu	37	1	57159640	57159640	+	Intron	SNP	C	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCB	5579	broad.mit.edu	37	16	23847514	23847514	+	Silent	SNP	G	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCB	5579	broad.mit.edu	37	16	24185905	24185905	+	Intron	SNP	A	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCI	5584	broad.mit.edu	37	3	170002471	170002471	+	Intron	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCZ	5590	broad.mit.edu	37	1	2103681	2103681	+	Intron	SNP	C	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKDC	5591	broad.mit.edu	37	8	48805717	48805717	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRRX1	5396	broad.mit.edu	37	1	170695456	170695456	+	Silent	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS1	5644	broad.mit.edu	37	7	142460269	142460269	+	Intron	SNP	C	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS55	203074	broad.mit.edu	37	8	10387085	10387085	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG7	5676	broad.mit.edu	37	19	43430044	43430044	+	Nonsense_Mutation	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMA5	5686	broad.mit.edu	37	1	109964558	109964558	+	Intron	SNP	A	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSPC1	55269	broad.mit.edu	37	13	20304631	20304632	+	Intron	DNP	CC	AA	AA			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTCD1	26024	broad.mit.edu	37	7	99022694	99022694	+	Silent	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTCH1	5727	broad.mit.edu	37	9	98242859	98242859	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTH2R	5746	broad.mit.edu	37	2	209355384	209355384	+	Silent	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXDNL	137902	broad.mit.edu	37	8	52321922	52321922	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXDN	7837	broad.mit.edu	37	2	1651936	1651936	+	Intron	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB24	53917	broad.mit.edu	37	5	176729837	176729837	+	Intron	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB5B	5869	broad.mit.edu	37	12	56374311	56374311	+	Intron	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD51L3	5892	broad.mit.edu	37	17	33445681	33445681	+	Intron	SNP	G	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RANBP10	57610	broad.mit.edu	37	16	67805824	67805824	+	Intron	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAPGEF2	9693	broad.mit.edu	37	4	160266332	160266332	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAPGEF5	9771	broad.mit.edu	37	7	22206804	22206804	+	Intron	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAVER2	55225	broad.mit.edu	37	1	65270553	65270553	+	Intron	SNP	C	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBBP6	5930	broad.mit.edu	37	16	24582309	24582309	+	Nonsense_Mutation	SNP	G	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM10	8241	broad.mit.edu	37	X	47006900	47006900	+	Intron	SNP	G	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM14	10432	broad.mit.edu	37	11	66391877	66391877	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM16	22828	broad.mit.edu	37	6	155145280	155145280	+	Intron	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM19	9904	broad.mit.edu	37	12	114397877	114397877	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM45	129831	broad.mit.edu	37	2	178981066	178981066	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RET	5979	broad.mit.edu	37	10	43613962	43613962	+	Intron	SNP	C	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFX5	5993	broad.mit.edu	37	1	151314991	151314991	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS6	9628	broad.mit.edu	37	14	72945014	72945014	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RILP	83547	broad.mit.edu	37	17	1552103	1552103	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS2	9699	broad.mit.edu	37	8	104709462	104709462	+	Missense_Mutation	SNP	T	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIN2	54453	broad.mit.edu	37	20	19945587	19945587	+	Intron	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIT2	6014	broad.mit.edu	37	18	40323480	40323480	+	Missense_Mutation	SNP	T	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNASE10	338879	broad.mit.edu	37	14	20978765	20978765	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF121	55298	broad.mit.edu	37	11	71701662	71701662	+	Missense_Mutation	SNP	A	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF175	285533	broad.mit.edu	37	4	154633588	154633588	+	Intron	SNP	C	T	T	rs35099009		TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF213	57674	broad.mit.edu	37	17	78321478	78321478	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL27A	6157	broad.mit.edu	37	11	8704205	8704205	+	5'UTR	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL5	6125	broad.mit.edu	37	1	93306114	93306114	+	Nonsense_Mutation	SNP	G	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSF1	51773	broad.mit.edu	37	11	77388035	77388035	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTCD1	8634	broad.mit.edu	37	1	100757055	100757055	+	Silent	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTTN	25914	broad.mit.edu	37	18	67781559	67781559	+	Intron	SNP	T	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR1	6261	broad.mit.edu	37	19	38995292	38995292	+	Intron	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237806644	237806644	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237947171	237947171	+	Missense_Mutation	SNP	G	C	C	rs41267517		TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAFB	6294	broad.mit.edu	37	19	5651059	5651059	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SALL1	6299	broad.mit.edu	37	16	51174300	51174300	+	Missense_Mutation	SNP	T	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMD9L	219285	broad.mit.edu	37	7	92762501	92762501	+	Silent	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SBF1	6305	broad.mit.edu	37	22	50899497	50899497	+	Intron	SNP	T	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCCPDH	51097	broad.mit.edu	37	1	246922379	246922379	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN3A	6328	broad.mit.edu	37	2	165947525	165947525	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDAD1	55153	broad.mit.edu	37	4	76878415	76878415	+	Intron	SNP	C	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDF2	6388	broad.mit.edu	37	17	26982864	26982864	+	Intron	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDS	10993	broad.mit.edu	37	12	113830941	113830941	+	Silent	SNP	G	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC14L2	23541	broad.mit.edu	37	22	30795744	30795744	+	Intron	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEL1L	6400	broad.mit.edu	37	14	82000001	82000001	+	Intron	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SELE	6401	broad.mit.edu	37	1	169697307	169697307	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SELP	6403	broad.mit.edu	37	1	169563046	169563046	+	Intron	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA4B	10509	broad.mit.edu	37	15	90760893	90760893	+	Intron	SNP	A	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SENP7	57337	broad.mit.edu	37	3	101060619	101060619	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPING1	710	broad.mit.edu	37	11	57382081	57382081	+	3'UTR	SNP	C	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFRS16	11129	broad.mit.edu	37	19	45567459	45567459	+	Silent	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFRS3	6428	broad.mit.edu	37	6	36569000	36569000	+	Intron	SNP	G	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFRS5	6430	broad.mit.edu	37	14	70237122	70237122	+	Intron	SNP	C	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFTPA1	653509	broad.mit.edu	37	10	81373913	81373913	+	3'UTR	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGCG	6445	broad.mit.edu	37	13	23808902	23808902	+	Intron	SNP	G	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH2B3	10019	broad.mit.edu	37	12	111884867	111884867	+	Intron	SNP	C	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHC4	399694	broad.mit.edu	37	15	49148057	49148057	+	Intron	SNP	C	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHPRH	257218	broad.mit.edu	37	6	146264343	146264343	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHROOM3	57619	broad.mit.edu	37	4	77660856	77660856	+	Silent	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIK3	23387	broad.mit.edu	37	11	116719725	116719725	+	Intron	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIPA1L1	26037	broad.mit.edu	37	14	72190691	72190691	+	Intron	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SKP1	6500	broad.mit.edu	37	5	133502893	133502893	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC15A3	51296	broad.mit.edu	37	11	60714087	60714087	+	Silent	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A18	5002	broad.mit.edu	37	11	2929522	2929522	+	Silent	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A19	60386	broad.mit.edu	37	17	73274489	73274489	+	Intron	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A39	51629	broad.mit.edu	37	17	42398804	42398804	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A7	115111	broad.mit.edu	37	8	92378836	92378836	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC38A5	92745	broad.mit.edu	37	X	48326354	48326354	+	Intron	SNP	G	A	A	rs113935040		TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A16	28968	broad.mit.edu	37	19	49812334	49812334	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC7A5	8140	broad.mit.edu	37	16	87866630	87866630	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC8A1	6546	broad.mit.edu	37	2	40401952	40401952	+	Intron	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC8A1	6546	broad.mit.edu	37	2	40655729	40655729	+	Silent	SNP	A	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A11	284525	broad.mit.edu	37	1	173472449	173472449	+	Silent	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMARCA4	6597	broad.mit.edu	37	19	11106948	11106948	+	Silent	SNP	C	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMARCA4	6597	broad.mit.edu	37	19	11168983	11168983	+	Nonsense_Mutation	SNP	G	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMPD3	55512	broad.mit.edu	37	16	68405584	68405584	+	Silent	SNP	G	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMTNL1	219537	broad.mit.edu	37	11	57310944	57310944	+	Intron	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNRNP200	23020	broad.mit.edu	37	2	96944390	96944390	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNRPN	6638	broad.mit.edu	37	15	25230377	25230377	+	Intron	SNP	A	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTG1	54212	broad.mit.edu	37	8	51621571	51621571	+	Intron	SNP	C	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOX5	6660	broad.mit.edu	37	12	24048627	24048627	+	Intron	SNP	A	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA18	132671	broad.mit.edu	37	4	52928477	52928477	+	Missense_Mutation	SNP	A	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA9	83890	broad.mit.edu	37	5	94994632	94994632	+	Intron	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEF2	79925	broad.mit.edu	37	5	35771819	35771819	+	Nonsense_Mutation	SNP	G	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158588932	158588932	+	Intron	SNP	T	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158596652	158596652	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158637900	158637901	+	Intron	DNP	GG	TT	TT			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTBN2	6712	broad.mit.edu	37	11	66475652	66475652	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRP54	6729	broad.mit.edu	37	14	35480660	35480662	+	Intron	DEL	TAG	-	-			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRRT	51593	broad.mit.edu	37	7	100484871	100484871	+	Intron	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSH1	54434	broad.mit.edu	37	12	109181921	109181921	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST7L	54879	broad.mit.edu	37	1	113124969	113124970	+	Intron	INS	-	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAT3	6774	broad.mit.edu	37	17	40498730	40498730	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STIP1	10963	broad.mit.edu	37	11	63964632	63964632	+	Intron	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK32A	202374	broad.mit.edu	37	5	146722497	146722497	+	Intron	SNP	C	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STX16	8675	broad.mit.edu	37	20	57243142	57243142	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUN3	256979	broad.mit.edu	37	7	48033980	48033980	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUN3	256979	broad.mit.edu	37	7	48035654	48035654	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUPT6H	6830	broad.mit.edu	37	17	27008931	27008931	+	Silent	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SV2A	9900	broad.mit.edu	37	1	149877635	149877635	+	Intron	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SVIL	6840	broad.mit.edu	37	10	29770826	29770826	+	Intron	SNP	T	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYCP1	6847	broad.mit.edu	37	1	115456644	115456644	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYMPK	8189	broad.mit.edu	37	19	46319126	46319126	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNJ1	8867	broad.mit.edu	37	21	34030051	34030051	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNJ2	8871	broad.mit.edu	37	6	158509831	158509831	+	Intron	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAGAP	117289	broad.mit.edu	37	6	159464545	159464545	+	Intron	SNP	A	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAS2R39	259285	broad.mit.edu	37	7	142880452	142880452	+	5'Flank	SNP	A	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCN1	6947	broad.mit.edu	37	11	59620404	59620404	+	3'UTR	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDRD5	163589	broad.mit.edu	37	1	179660106	179660106	+	3'UTR	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TELO2	9894	broad.mit.edu	37	16	1555456	1555456	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TESC	54997	broad.mit.edu	37	12	117513112	117513112	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX15	56154	broad.mit.edu	37	8	30704643	30704643	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFDP3	51270	broad.mit.edu	37	X	132351956	132351956	+	Missense_Mutation	SNP	A	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGFB2	7042	broad.mit.edu	37	1	218607277	218607277	+	Intron	SNP	T	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THADA	63892	broad.mit.edu	37	2	43519314	43519314	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THAP7	80764	broad.mit.edu	37	22	21354220	21354220	+	Silent	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THBS4	7060	broad.mit.edu	37	5	79378926	79378926	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THUMPD2	80745	broad.mit.edu	37	2	39998790	39998790	+	Intron	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLN1	7094	broad.mit.edu	37	9	35717584	35717584	+	Intron	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLR4	7099	broad.mit.edu	37	9	120476246	120476246	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLR4	7099	broad.mit.edu	37	9	120476748	120476748	+	Missense_Mutation	SNP	A	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TM7SF3	51768	broad.mit.edu	37	12	27128447	27128447	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM107	84314	broad.mit.edu	37	17	8077424	8077424	+	3'UTR	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM175	84286	broad.mit.edu	37	4	945389	945389	+	Intron	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM206	55248	broad.mit.edu	37	1	212538537	212538537	+	3'UTR	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM63B	55362	broad.mit.edu	37	6	44102978	44102978	+	Intron	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMTC2	160335	broad.mit.edu	37	12	83379945	83379945	+	Intron	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMTC2	160335	broad.mit.edu	37	12	83424669	83424669	+	Intron	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMUB2	79089	broad.mit.edu	37	17	42267747	42267747	+	Intron	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFRSF11B	4982	broad.mit.edu	37	8	119945543	119945543	+	Intron	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNK2	10188	broad.mit.edu	37	3	195608805	195608805	+	Intron	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNKS	8658	broad.mit.edu	37	8	9623968	9623968	+	Intron	SNP	A	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPH1	7166	broad.mit.edu	37	11	18057575	18057575	+	Missense_Mutation	SNP	G	C	C	rs146455709	byFrequency	TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE2	93492	broad.mit.edu	37	13	19997285	19997285	+	Nonsense_Mutation	SNP	C	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAM2	9697	broad.mit.edu	37	6	52370505	52370505	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIB2	28951	broad.mit.edu	37	2	12880440	12880440	+	Intron	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM62	55223	broad.mit.edu	37	1	33623979	33623979	+	Intron	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TROAP	10024	broad.mit.edu	37	12	49724414	49724414	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRO	7216	broad.mit.edu	37	X	54949381	54949381	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPS1	7227	broad.mit.edu	37	8	116599829	116599829	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHR	7253	broad.mit.edu	37	14	81499329	81499329	+	Intron	SNP	A	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHR	7253	broad.mit.edu	37	14	81610780	81610780	+	3'UTR	SNP	C	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSPAN19	144448	broad.mit.edu	37	12	85411261	85411261	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSPAN2	10100	broad.mit.edu	37	1	115600088	115600088	+	Intron	SNP	T	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSPYL1	7259	broad.mit.edu	37	6	116601142	116601142	+	5'UTR	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC37	9652	broad.mit.edu	37	5	94842559	94842559	+	Intron	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179438325	179438325	+	Missense_Mutation	SNP	T	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179458655	179458655	+	Intron	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179579143	179579143	+	Silent	SNP	A	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179579856	179579856	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179604934	179604934	+	Silent	SNP	T	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBA1A	7846	broad.mit.edu	37	12	49578828	49578828	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBA4A	7277	broad.mit.edu	37	2	220115640	220115640	+	Missense_Mutation	SNP	G	A	A	rs147946711		TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBAC2	337867	broad.mit.edu	37	13	99890507	99890507	+	Intron	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2L3	7332	broad.mit.edu	37	22	21921998	21921998	+	5'UTR	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBR2	23304	broad.mit.edu	37	6	42657311	42657311	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBR4	23352	broad.mit.edu	37	1	19499631	19499631	+	Intron	SNP	T	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UPB1	51733	broad.mit.edu	37	22	24911156	24911156	+	Intron	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UPK2	7379	broad.mit.edu	37	11	118828128	118828128	+	Intron	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UPK2	7379	broad.mit.edu	37	11	118828747	118828747	+	Intron	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216371906	216371906	+	Missense_Mutation	SNP	G	C	C	rs150978513	by1000genomes	TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216420227	216420227	+	Missense_Mutation	SNP	G	A	A	rs142655448		TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP28	57646	broad.mit.edu	37	11	113675628	113675628	+	Silent	SNP	C	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP44	84101	broad.mit.edu	37	12	95927518	95927518	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP53	54532	broad.mit.edu	37	4	120213799	120213799	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP54	159195	broad.mit.edu	37	10	75286573	75286573	+	Intron	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USPL1	10208	broad.mit.edu	37	13	31232310	31232310	+	Missense_Mutation	SNP	A	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	38599174	38599174	+	IGR	SNP	T	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	39006284	39006284	+	IGR	SNP	T	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42599611	42599611	+	IGR	SNP	A	C	C	rs57077003		TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	52439529	52439529	+	IGR	SNP	G	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	48973091	48973091	+	IGR	SNP	A	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	50227880	50227880	+	IGR	SNP	C	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	51458875	51458875	+	IGR	SNP	A	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55156006	55156006	+	IGR	SNP	T	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	31015091	31015091	+	IGR	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	53525396	53525396	+	IGR	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	8167691	8167691	+	IGR	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	83545166	83545166	+	IGR	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	59104538	59104538	+	IGR	SNP	A	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	68406888	68406888	+	IGR	SNP	G	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	88545463	88545463	+	IGR	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20097696	20097696	+	IGR	SNP	C	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20137459	20137459	+	IGR	SNP	T	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20181538	20181538	+	IGR	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	90833583	90833583	+	IGR	SNP	T	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20445988	20445988	+	IGR	DEL	G	-	-			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	27210440	27210440	+	IGR	SNP	T	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	30903660	30903660	+	IGR	SNP	G	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	63246167	63246167	+	IGR	SNP	G	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	66109831	66109831	+	IGR	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	84770861	84770861	+	IGR	SNP	G	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	93339341	93339341	+	IGR	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32391374	32391374	+	IGR	SNP	A	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33371692	33371692	+	IGR	SNP	C	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33498941	33498941	+	IGR	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	55780643	55780643	+	IGR	SNP	A	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	39484436	39484436	+	IGR	SNP	G	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	43675069	43675069	+	IGR	SNP	T	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	60110363	60110363	+	IGR	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	157155	157155	+	IGR	SNP	C	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	152628902	152628902	+	IGR	SNP	A	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	192962853	192962853	+	IGR	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	199356568	199356568	+	IGR	SNP	A	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	53691693	53691693	+	IGR	SNP	T	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	17340672	17340672	+	IGR	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	175164957	175164957	+	IGR	SNP	A	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	68606435	68606435	+	IGR	SNP	T	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	80213519	80213519	+	IGR	SNP	C	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	106448526	106448526	+	IGR	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	120382092	120382092	+	IGR	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	137276281	137276281	+	IGR	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	154580732	154580732	+	IGR	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	174340734	174340734	+	IGR	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	65298505	65298505	+	IGR	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	78033754	78033754	+	IGR	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	9735063	9735063	+	IGR	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	107910696	107910696	+	IGR	SNP	C	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	42892874	42892874	+	IGR	SNP	G	A	A	rs149815785	by1000genomes	TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	84845777	84845777	+	IGR	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	63921655	63921655	+	IGR	SNP	T	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	51668204	51668204	+	IGR	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57217910	57217910	+	IGR	SNP	T	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63563264	63563264	+	IGR	SNP	G	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63924237	63924237	+	IGR	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	29885930	29885930	+	IGR	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	48077039	48077039	+	IGR	SNP	G	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	82605865	82605865	+	IGR	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	96960163	96960163	+	IGR	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	12288128	12288128	+	IGR	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	125448861	125448861	+	IGR	SNP	G	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	90803196	90803196	+	IGR	SNP	C	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	97244870	97244870	+	IGR	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	147279715	147279715	+	IGR	SNP	T	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	63652937	63652937	+	IGR	SNP	T	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	78580049	78580049	+	IGR	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAV3	10451	broad.mit.edu	37	1	108160383	108160383	+	Intron	SNP	C	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VCAM1	7412	broad.mit.edu	37	1	101186146	101186146	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS41	27072	broad.mit.edu	37	7	38766411	38766411	+	Intron	SNP	C	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VRK3	51231	broad.mit.edu	37	19	50512443	50512443	+	Intron	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWA2	340706	broad.mit.edu	37	10	116045881	116045881	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR45	11152	broad.mit.edu	37	X	48933522	48933522	+	Intron	SNP	C	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR52	55779	broad.mit.edu	37	3	113079155	113079155	+	Intron	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR70	55100	broad.mit.edu	37	5	37379349	37379349	+	5'Flank	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WFS1	7466	broad.mit.edu	37	4	6296864	6296864	+	Missense_Mutation	SNP	A	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WIPF2	147179	broad.mit.edu	37	17	38434499	38434499	+	3'UTR	SNP	T	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WWP2	11060	broad.mit.edu	37	16	69971205	69971205	+	Intron	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIRP2	129446	broad.mit.edu	37	2	168096470	168096470	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XPNPEP3	63929	broad.mit.edu	37	22	41318563	41318563	+	Intron	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XYLB	9942	broad.mit.edu	37	3	38401862	38401862	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YTHDF2	51441	broad.mit.edu	37	1	29069903	29069903	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBED4	9889	broad.mit.edu	37	22	50277565	50277565	+	Silent	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB12	221527	broad.mit.edu	37	6	31868936	31868936	+	Silent	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3H10	84872	broad.mit.edu	37	12	56514975	56514975	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3H12B	340554	broad.mit.edu	37	X	64718935	64718935	+	Silent	SNP	C	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCCHC10	54819	broad.mit.edu	37	5	132339027	132339027	+	Intron	SNP	C	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIC1	7545	broad.mit.edu	37	3	147130532	147130532	+	Intron	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF142	7701	broad.mit.edu	37	2	219508461	219508461	+	Silent	SNP	G	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF25	219749	broad.mit.edu	37	10	38260677	38260677	+	5'UTR	SNP	A	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF283	284349	broad.mit.edu	37	19	44351997	44351997	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF35	7584	broad.mit.edu	37	3	44701145	44701145	+	Silent	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF385B	151126	broad.mit.edu	37	2	180309776	180309776	+	Intron	SNP	C	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF385D	79750	broad.mit.edu	37	3	21706566	21706567	+	Intron	INS	-	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF521	25925	broad.mit.edu	37	18	22806029	22806029	+	Missense_Mutation	SNP	T	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF532	55205	broad.mit.edu	37	18	56648817	56648817	+	Nonsense_Mutation	SNP	G	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF569	148266	broad.mit.edu	37	19	37918746	37918746	+	Intron	SNP	G	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF642	339559	broad.mit.edu	37	1	40954614	40954614	+	Intron	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF721	170960	broad.mit.edu	37	4	437398	437398	+	Silent	SNP	A	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF804A	91752	broad.mit.edu	37	2	185802437	185802437	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF804B	219578	broad.mit.edu	37	7	88966042	88966042	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF98	148198	broad.mit.edu	37	19	22574557	22574557	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZP3	7784	broad.mit.edu	37	7	76058924	76058924	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	48902261	48902261	+	Silent	SNP	C	T	T			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	42003773	42003773	+	5'Flank	SNP	T	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	21470315	21470315	+	Intron	SNP	G	A	A			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89399256	89399256	+	Intron	SNP	T	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90122188	90122188	+	Intron	SNP	T	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	136848884	136848884	+	RNA	SNP	A	C	C			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	98774545	98774545	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
